Natural England Commissioned Report NECR009
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Applications of Machine Learning in Common Agricultural Policy at the Rural Payments Agency
Applications of Machine Learning in Common Agricultural Policy at the Rural Payments Agency Sanjay Rana Senior GIS Analyst GI Technical Team Reading 1 What are you gonna find out? • Knowing me and RPA (and knowing you - aha ?!) • How are we using Machine Learning at the RPA? – Current Activities – Random Forest for Making Crop Map of England – Work in Progress Activities – Deep Learning for Crop Map of England, Land Cover Segmentation, and locating Radio Frequency Interference • I will cover more on applications of Machine Learning for RPA operations, and less about technical solutions. 2 My resume so far… Geology GIS GeoComputation Academics Researcher & Radio DJ Consultant Civil Servant Lecturer Profession 3 Rural Payments Agency Rural Payments Agency (RPA) is the Defra agency responsible for the distribution of subsidies to farmers and landowners in England under all the EU's Common Agricultural Policy (CAP) schemes. 4 Area Based Payments/Subsidies Claim Claim Validation Visual Checks Machine Learning Control Helpline 5 A bit more info on Controls • To calculate correct CAP payments, the RPA Land Parcel Information System (LPIS) is constantly being updated with information from customers, OS MasterMap, Aerial Photographs and Satellite Images. • But, in addition as per EU regulations, claims from approximately 5% of customers must be controlled (i.e. checked) annually. Failure to make correct payments lead to large penalties for Member States. France had a disallowance of 1 billion euro for mismanaging CAP funds during 2009- 2013. • Controls/Checks are done either through regular Field Inspections (20%), or Remotely with Very High Resolution Satellite Images (80%) for specific areas* to ascertain farmer declaration of agricultural (e.g. -
Mechanoreceptors in Early Developmental Stages of the Pycnogonida
UACE2019 - Conference Proceedings Mechanoreceptors in Early Developmental Stages of the Pycnogonida John A. Fornshell * a a U.S. National Museum of Natural History Department of Invertebrate Zoology Smithsonian Institution Washington, D.C. USA *Correspondence: [email protected]; Tel. (571) 426-2398 ABSTRACT Members of the phylum Arthropoda detect fluid flow and sound/particle vibrations using sensory organs called sensilla. These sensilla detect sound/particle vibrations in the boundary layer. In the present study, archived specimens from the United States National Museum of Natural History were examined in an effort to extend our knowledge of the presence of sensilla on the early post hatching developmental stages, first and second instars, of pycnogonids. In the work presented here we look at three families, four genera and ten species of early post hatching developmental stages of sea spiders. They are Family Ammotheidae, Achelia cuneatis Child, 1999, Ammothea allopodes Fry and Hedgpeth, 1969, Ammothea carolinensis Leach 1814, Ammothea clausi Pfeffer, 1889, Ammothea striata (Möbius, 1902), Family Nymphonidae, Nymphon grossipes (Fabricius, 1780), N. australe Hodgson, 1902, N. charcoti Bouvier, 1911, N. Tenellum (Sars, 1888) and Pycnogonidae, Pentapycnon charcoti Bouvier, 1910. Electron micrograph images of these species were used to identify and describe the sensilla present. Most body organs such as mouthparts, the eye tubercle, appendages and spines are proportionally much smaller in the early post hatching developmental stages compared to their size in the adults, while the sensilla are comparable in size and shape to those found on the adults. In the first instar of Pentapycnon charcoti sensilla are present, but not in the adult. -
First Detection of Pine Wood Nematode Vector, Monochamus Sutor Sutor (Linnaeus, 1758) in Lebanon (Coleoptera, Cerambycidae, Lamiinae)
Bulletin de la Société entomologique de France, 121 (4), 2016 : 455-460. First detection of Pine Wood Nematode Vector, Monochamus sutor sutor (Linnaeus, 1758) in Lebanon (Coleoptera, Cerambycidae, Lamiinae) by Zinette MOUSSA1, Christian COCQUEMPOT2 & Dany YAMMOUNI1 1 Laboratory of Entomology − Lebanese Agricultural Research Institute, Fanar, Lebanon <[email protected]> <[email protected]> 2 INRA, UMR CBGP, Campus International de Baillarguet, F − 34988 Montferrier-sur-Lez cedex, France <[email protected]> Abstract. − An adult of Monochamus (Monochamus) sutor sutor (Linnaeus, 1758) has been found alive in Lebanon in 2014. This potential vector of the phytoparasitic pine nematodes Bursaphelenchus spp., the causal agents of pine wilt disease, is a serious threat to Lebanese forest. The circumstances of the discovery are given, followed by information about the genera Monochamus and Bursaphelenchus applied to Lebanon. An evaluation of the risk for forests of Lebanon is specified. Résumé. − Premier signalement du vecteur du Nématode du Pin, Monochamus sutor sutor (Linnaeus, 1758) au Liban (Coleoptera, Cerambycidae, Lamiinae). Un adulte de Monochamus (Monochamus) sutor sutor (Linnaeus, 1758) vivant a été découvert au Liban en 2014. Ce vecteur potentiel des Nématodes phytoparasites Bursaphe lenchus spp., agents du dépérissement des Conifères, représente une menace sérieuse pour la forêt libanaise. Les circonstances de la découverte sont données et suivies des informations sur les genres Monochamus et Bursaphelenchus appliquées au Liban. Une évaluation du risque encouru par les forêts du Liban est précisée. Keywords. − Bursaphelenchus spp., Pine wilt disease, Lebanon, interception, risks. _________________ Monochamus Dejean, 1821 (Coleoptera, Cerambycidae, Lamiinae) is a large genus of wood-boring beetles comprising approximately 150 species reported in Asia, Europe, Africa and North America (VILLIERS, 1978; USDA-APHIS, 2011). -
Rhinogobius Mizunoi, a New Species of Freshwater Goby (Teleostei: Gobiidae) from Japan
Bull. Kanagawa prefect. Mus. (Nat. Sci.), no. 46, pp. 79-95, Feb. 2017 79 Original Article Rhinogobius mizunoi, A New Species of Freshwater Goby (Teleostei: Gobiidae) from Japan Toshiyuki Suzuki 1), Koichi Shibukawa 2) & Masahiro Aizawa 3) Abstract. A new freshwater goby, Rhinogobius mizunoi, is described based on six specimens from a freshwater stream in Shizuoka Prefecture, Japan. The species is distinguished from all congeneric species by the following combination of characters: I, 8 second dorsal-fin rays; 18–20 pectoral-fin rays; 13–18 predorsal scales; 33–35 longitudinal scales; 8 or 9 transverse scales; 10+16=26 vertebrae 26; first dorsal fin elongate in male, its distal tip reaching to base of fourth branched ray of second dorsal fin in males when adpressed; when alive or freshly-collected, cheek with several pale sky spots; caudal fin without distinct rows of dark dots; a pair of vertically- arranged dark brown blotches at caudal-fin base in young and females. Key words: amphidoromous, fish taxonomy, Rhinogobius sp. CO, valid species Introduction 6–11 segmented rays; anal fin with a single spine and 5–11 The freshwater gobies of the genus Rhinogobius Gill, segmented rays; pectoral fin with 14–23 segmented rays; 1859 are widely distributed in the East and Southeast pelvic fin with a single spine and five segmented rays; Asian regions, including the Russia Far East, Japan, 25–44 longitudinal scales; 7–16 transverse scales; P-V 3/ Korea, China, Taiwan, the Philippines, Vietnam, Laos, II II I I 0/9; 10–11+15–18= 25–29 vertebrae; body mostly Cambodia, and Thailand (Chen & Miller, 2014). -
Information on Distribution of Round Goby
Baltic Marine Environment Protection Commission Continuation of the project on Baltic-wide assessment of FISH-PRO II 4-2017 coastal fish communities in support of an ecosystem-based management Tallinn, Estonia, 13-15 February 2017 Document title Information on distribution of round goby Code 2-2 Category INF Agenda Item 2 – Information of relevance to FISH-PRO II Submission date 6.2.2017 Submitted by Estonia Reference Paragraph 3.13 of the Outcome of FISH-PRO II 3-2016 Background FISH-PRO II 3-2016 agreed that it would be valuable to compile information on the distribution and national monitoring of round goby. The attached document is a paper by Kotta et al.: “Shipping and natural environmental conditions determine the distribution of the invasive non-indigenous round goby Neogobius melanostomus in a regional sea.” Action requested The Meeting is invited to take note and make use of the information as appropriate. Page 1 of 1 Estuarine, Coastal and Shelf Science 169 (2016) 15e24 Contents lists available at ScienceDirect Estuarine, Coastal and Shelf Science journal homepage: www.elsevier.com/locate/ecss Shipping and natural environmental conditions determine the distribution of the invasive non-indigenous round goby Neogobius melanostomus in a regional sea * Jonne Kotta a, , Kristiina Nurkse a, Riikka Puntila b, c, Henn Ojaveer a a Estonian Marine Institute, University of Tartu, Maealuse€ 14, 12618 Tallinn, Estonia b Finnish Environment Institute, Marine Research Center, Erik Palmenin aukio 1, FI-00560 Helsinki, Finland c University of Helsinki, Department of Aquatic Sciences, P.O. Box 65, Biocenter 3, Viikinkaari 1, FI-00014, Finland article info abstract Article history: Introductions of non-indigenous species (NIS) are considered a major threat to aquatic ecosystems Received 5 March 2015 worldwide. -
Lepidoptera, Limacodidae) 23 Doi: 10.3897/Zookeys.306.5216 Research Article Launched to Accelerate Biodiversity Research
A peer-reviewed open-access journal ZooKeys 306: 23–36A review (2013) of the genus Monema Walker in China (Lepidoptera, Limacodidae) 23 doi: 10.3897/zookeys.306.5216 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A review of the genus Monema Walker in China (Lepidoptera, Limacodidae) Zhaohui Pan1,†, Chaodong Zhu2,‡, Chunsheng Wu2,§ 1 Institute of Plateau Ecology, Agriculture and Animal Husbandry College of Tibet University, Linzhi 860000, P.R. China 2 Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, P.R. China † urn:lsid:zoobank.org:author:327D5273-1638-4F19-BF87-345AA1E264D9 ‡ urn:lsid:zoobank.org:author:8B542B39-2118-4146-83F8-73AB65257FB9 § urn:lsid:zoobank.org:author:9ED21D9F-83DB-4F22-AAB2-C9F0F5ABD12C Corresponding author: Chaodong Zhu ([email protected]); Chunsheng Wu ([email protected]) Academic editor: E. van Nieukerken | Received 27 March 2013 | Accepted 29 May 2013 | Published 3 June 2013 urn:lsid:zoobank.org:pub:4FFDB920-7E4A-4F33-9D8E-16CC7189723F Citation: Pan Z, Zhu C, Wu C (2013) A review of the genus Monema Walker in China (Lepidoptera, Limacodidae). ZooKeys 306: 23–36. doi: 10.3897/zookeys.306.5216 Abstract Four species and one subspecies of the genus Monema Walker, 1855 are recognized from China, in which M. tanaognatha Wu & Pan sp. n. is described as new, M. coralina Dudgeon, 1895 and M. meyi Solovyev & Witt, 2009 are newly recorded for China. The female of M. meyi is reported for the first time. Monema ni- grans de Joannis, 1901 and M. melli Hering, 1931 are synonymized with M. -
Disease and Clinical Signs Poster
African Clawed Frog Xenopus laevis Diseases and Clinical Signs in Photographs Therese Jones-Green University Biomedical Services Abstract Reported clinical signs associated with ill health and Clinical signs found between 2016 to 2018 Many diseases of Xenopus laevis frogs have been described in the • Opened in 2005, the biofacility can hold up to 900 female and 240 disease Clinical signs found between 2016 to 2018 male frogs in a Marine Biotech (now serviced by MBK Installations Ltd.) • 80 recirculating aquatic system. • Buoyancy problems 70 bridge this gap using photographs taken of frogs with clinical signs. The system monitors parameters such as: temperature, pH, • • Changes in activity e.g. lethargy or easily startled. My aims are: conductivity, and Total Gas Pressure. 60 • Unusual amount of skin shedding. 2018 • To share my experiences, via images, to help improve the welfare and • Frogs are maintained on mains fed water with a 20% water exchange. 50 ases • Weight loss, or failure to feed correctly. c husbandry of this species. • 2017 • Coelomic (body cavity) distention. 40 • To stimulate a dialogue which results in further sharing of ideas and 2016 Whole body bloat. 30 information. • Frogs are held under a 12 hour light/dark cycle. • Number of • Each tank has a PVC enrichment tube (30cm x 10cm), with smoothed • Fungal strands/tufts. 20 Introduction cut edges. • Sores or tremors at extremities (forearms and toes). 10 Between January 2016 and October 2018, cases of ill health and disease • Frogs are fed three times a week with a commercial trout pellet. • Redness or red spots. 0 Oedema Red leg Red leg (bad Red leg Gas bubble Sores on forearm Opaque cornea Skeletal Growth (cartilage Scar Cabletie Missing claws Eggbound in a colony of Xenopus laevis frogs housed by the University Biological hormone) (nematodes) disease deformity under skin) • The focus of the research undertaken in the biofacility is embryonic and • Excessive slime/mucous production or not enough (dry dull skin). -
This Document Was Withdrawn on 6 November 2017
2017. November 6 on understanding withdrawn was water for wildlife document This Water resources and conservation: the eco-hydrological requirements of habitats and species Assessing We are the Environment Agency. It’s our job to look after your 2017. environment and make it a better place – for you, and for future generations. Your environment is the air you breathe, the water you drink and the ground you walk on. Working with business, Government and society as a whole, we are makingNovember your environment cleaner and healthier. 6 The Environment Agency. Out there, makingon your environment a better place. withdrawn was Published by: Environment Agency Rio House Waterside Drive, Aztec West Almondsbury, Bristol BS32 4UD Tel: 0870document 8506506 Email: [email protected] www.environment-agency.gov.uk This© Environment Agency All rights reserved. This document may be reproduced with prior permission of the Environment Agency. April 2007 Contents Brief summary 1. Introduction 2017. 2. Species and habitats 2.2.1 Coastal and halophytic habitats 2.2.2 Freshwater habitats 2.2.3 Temperate heath, scrub and grasslands 2.2.4 Raised bogs, fens, mires, alluvial forests and bog woodland November 2.3.1 Invertebrates 6 2.3.2 Fish and amphibians 2.3.3 Mammals on 2.3.4 Plants 2.3.5 Birds 3. Hydro-ecological domains and hydrological regimes 4 Assessment methods withdrawn 5. Case studies was 6. References 7. Glossary of abbreviations document This Environment Agency in partnership with Natural England and Countryside Council for Wales Understanding water for wildlife Contents Brief summary The Restoring Sustainable Abstraction (RSA) Programme was set up by the Environment Agency in 1999 to identify and catalogue2017. -
Table S1. Nakharuthai and Srisapoome (2020)
Primer name Nucleotide sequence (5’→3’) Purpose CXC-1F New TGAACCCTGAGCTGAAGGCCGTGA Real-time PCR CXC-1R New TGAAGGTCTGATGAGTTTGTCGTC Real-time PCR CXC-1R CCTTCAGCTCAGGGTTCAAGC Genomic PCR CXC-2F New GCTTGAACCCCGAGCTGAAAAACG Real-time PCR CXC-2R New GTTCAGAGGTCGTATGAGGTGCTT Real-time PCR CXC-2F CAAGCAGGACAACAGTGTCTGTGT 3’RACE CXC-2AR GTTGCATGATTTGGATGCTGGGTAG 5’RACE CXC-1FSB AACATATGTCTCCCAGGCCCAACTCAAAC Southern blot CXC-1RSB CTCGAGTTATTTTGCACTGATGTGCAA Southern blot CXC1Exon1F CAAAGTGTTTCTGCTCCTGG Genomic PCR On-CXC1FOverEx CATATGCAACTCAAACAAGCAGGACAACAGT Overexpression On-CXC1ROverEx CTCGAGTTTTGCACTGATGTGCAATTTCAA Overexpression On-CXC2FOverEx CATATGCAACTCAAACAAGCAGGACAACAGT Overexpression On-CXC2ROverEx CTCGAGCATGGCAGCTGTGGAGGGTTCCAC Overexpression β-actinrealtimeF ACAGGATGCAGAAGGAGATCACAG Real-time PCR β-actinrealtimeR GTACTCCTGCTTGCTGATCCACAT Real-time PCR M13F AAAACGACGGCCAG Nucleotide sequencing M13R AACAGCTATGACCATG Nucleotide sequencing UPM-long (0.4 µM) CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT RACE PCR UPM-short (2 µM) CTAATAC GACTCACTATA GGGC RACE PCR Table S1. Nakharuthai and Srisapoome (2020) On-CXC1 Nucleotide (%) Amino acid (%) On-CXC2 Nucleotide (%) Amino acid (%) Versus identity identity similarity Versus identity identity Similarity Teleost fish 1. Rock bream, Oplegnathus fasciatus (AB703273) 64.5 49.1 68.1 O. fasciatus 70.7 57.7 75.4 2. Mandarin fish, Siniperca chuatsi (AAY79282) 63.2 48.1 68.9 S. chuatsi 70.5 54.0 78.8 3. Atlantic halibut, Hippoglossus hippoglossus (ACY54778) 52.0 39.3 51.1 H. hippoglossus 64.5 46.3 63.9 4. Common carp IL-8, Cyprinus carpio (ABE47600) 44.9 19.1 34.1 C. carpio 49.4 21.9 42.6 5. Rainbow trout IL-8, Oncorhynchus mykiss (CAC33585) 44.0 21.3 36.3 O. mykiss 47.3 23.7 44.4 6. Japanese flounder IL-8, Paralichthys olivaceus (AAL05442) 48.4 25.4 45.9 P. -
Phylogenomic Resolution of Sea Spider Diversification Through Integration Of
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.31.929612; this version posted February 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Phylogenomic resolution of sea spider diversification through integration of multiple data classes 1Jesús A. Ballesteros†, 1Emily V.W. Setton†, 1Carlos E. Santibáñez López†, 2Claudia P. Arango, 3Georg Brenneis, 4Saskia Brix, 5Esperanza Cano-Sánchez, 6Merai Dandouch, 6Geoffrey F. Dilly, 7Marc P. Eleaume, 1Guilherme Gainett, 8Cyril Gallut, 6Sean McAtee, 6Lauren McIntyre, 9Amy L. Moran, 6Randy Moran, 5Pablo J. López-González, 10Gerhard Scholtz, 6Clay Williamson, 11H. Arthur Woods, 12Ward C. Wheeler, 1Prashant P. Sharma* 1 Department of Integrative Biology, University of Wisconsin–Madison, Madison, WI, USA 2 Queensland Museum, Biodiversity Program, Brisbane, Australia 3 Zoologisches Institut und Museum, Cytologie und Evolutionsbiologie, Universität Greifswald, Greifswald, Germany 4 Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), c/o Biocenter Grindel (CeNak), Martin-Luther-King-Platz 3, Hamburg, Germany 5 Biodiversidad y Ecología Acuática, Departamento de Zoología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain 6 Department of Biology, California State University-Channel Islands, Camarillo, CA, USA 7 Départment Milieux et Peuplements Aquatiques, Muséum national d’Histoire naturelle, Paris, France 8 Institut de Systématique, Emvolution, Biodiversité (ISYEB), Sorbonne Université, CNRS, Concarneau, France 9 Department of Biology, University of Hawai’i at Mānoa, Honolulu, HI, USA Page 1 of 31 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.31.929612; this version posted February 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. -
Schütt, Kärnten) Von Sandra Aurenhammer, Christian Komposch, Erwin Holzer, Carolus Holzschuh & Werner E
Carinthia II n 205./125. Jahrgang n Seiten 439–502 n Klagenfurt 2015 439 Xylobionte Käfergemeinschaften (Insecta: Coleoptera) im Bergsturzgebiet des Dobratsch (Schütt, Kärnten) Von Sandra AURENHAMMER, Christian KOMPOscH, Erwin HOLZER, Carolus HOLZscHUH & Werner E. HOLZINGER Zusammenfassung Schlüsselwörter Die Schütt an der Südflanke des Dobratsch (Villacher Alpe, Gailtaler Alpen, Villacher Alpe, Kärnten, Österreich) stellt mit einer Ausdehnung von 24 km² eines der größten dealpi Totholzkäfer, nen Bergsturzgebiete der Ostalpen dar und ist österreichweit ein Zentrum der Biodi Arteninventar, versität. Auf Basis umfassender aktueller Freilanderhebungen und unter Einbeziehung Biodiversität, diverser historischer Datenquellen wurde ein Arteninventar xylobionter Käfer erstellt. Collection Herrmann, Die aktuellen Kartierungen erfolgten schwerpunktmäßig in der Vegetations Buprestis splendens, periode 2012 in den Natura2000gebieten AT2112000 „Villacher Alpe (Dobratsch)“ Gnathotrichus und AT2120000 „Schüttgraschelitzen“ mit 15 Kroneneklektoren (Kreuzfensterfallen), materiarius, Besammeln durch Handfang, Klopfschirm, Kescher und Bodensieb sowie durch das Acanthocinus Eintragen von Totholz. henschi, In Summe wurden in der Schütt 536 Käferspezies – darunter 320 xylobionte – Kiefernblockwald, aus 65 Familien nachgewiesen. Das entspricht knapp einem Fünftel des heimischen Urwaldreliktarten, Artenspektrums an Totholzkäfern. Im Zuge der aktuellen Freilanderhebungen wurden submediterrane 216 xylobionte Arten erfasst. Durch Berechnung einer Artenakkumulationskurve -
Attraction of Monema Flavescens Males to Synthetic Blends of Sex Pheromones
Bulletin of Insectology 69 (2): 193-198, 2016 ISSN 1721-8861 Attraction of Monema flavescens males to synthetic blends of sex pheromones 1 2 1 2 3 2 Shuzhen YANG , Hongxia LIU , Haixia ZHENG , Meihong YANG , Yanxia REN , Jintong ZHANG 1Agronomy College, Shanxi Agricultural University, Taigu, Shanxi, China 2Institute of Chemical Ecology, Shanxi Agricultural University, Taigu, Shanxi, China 3Shanxi Branch Valley Biological Pesticide Co. Ltd, Taigu, Shanxi, China Abstract This study was performed in Luanxian County, Hebei Province, China, from June to August of 2014 and 2015. We sought to de- velop a new and effective method for controlling the moth Monema flavescens. We synthesized the principal female sex phero- mones and conducted a series of field experiments using traps baited with (E)-8-decen-1-ol (E8-10:OH), (Z)-7,9-decadien-1-ol (Z7,9-10:OH), and (Z)-9,11-dodecadien-1-ol (Z9,11-12:OH), alone or in combination. The number of males captured by traps baited with synthetic E8-10:OH increased when Z7,9-10:OH, Z9,11-12:OH, or both was/were added. Traps baited with a 10:2:1 (w/w/w) mixture of E8-10:OH, Z7,9-10:OH, and Z9,11-12:OH at a total dose of 650 µg septum−1 were the most efficient. Further, a delta trap hung about 1.5 m above the ground was very effective. Our work will facilitate safer and more environmentally friendly management of M. flavescens. Key words: Monema flavescens, sex pheromone trapping, (E)-8-decen-1-ol, (Z)-7,9-decadien-1-ol, (Z)-9,11-dodecadien-1-ol.