Acridine Orange, 51, 85, 168, 186, 260, 268, 271, 298-316 Actinomycin D

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Acridine Orange, 51, 85, 168, 186, 260, 268, 271, 298-316 Actinomycin D Index Acridine orange, 51, 85, 168, 186, Cell 260, 268, 271, 298-316 doubling time (T^), 56, 74-77 Actinomycin D, 52, 256, 257, 259, population heterogeneity, 15, 34, 263, 273, 330 37, 40, 102, 193, 231, 232 Anthracyclines, 337-366 sorting, 74, 75, 82-85, 94, 95,101- adriamycin, 57-59, 64, 179, 337, 105, 114, 127, 148, 173, 371 338, 341-356 Cell cycle daunomycin, 337, 338, 341-356 asynchronous populations, 1, 97- other, 341-345 99, 102, 105, 106, 111, 112, resistance, 349-356 174, 231-238, 305-313, 317- transport, 342-356 328 Ara-C (see Cytosine arabinoside) duration (T^), 32-44, 49, 56, 64, Autoradiography, 1-24, 31-44, 47- n, 102, 103, 127, 317-328, 55, 65, n, 104, 112, 114, 125, 372-395 144, 146, 148, 263, 291 perturbed populations, 120-126, artifacts, 10, 11, 14 1Z%-1M, 309-313 background, 11, 15, 16-20 recruitment, 42, 43, 57, 58, 63-66, chemography, 21-23 79, 81, 93, 99, 105, 106, 111, standards, 21 112, 207, 208, 238-249 Azacytidine (dihydroxy-5-azacyti- Centrifugal elutriation (see Elutria- dine), 259, 263, 310, 311 tion) Chemotherapy, 48, 59, 61, 62, 73, Bleomycin, 82 86, 150, 207-209, 238-247, 275, Bone marrow, 126, 127, 129-131, 310-316, 330, 331 185, 198, 207, 266, 340, 351 terminal point of drug action, Bromodeoxyuridine (BrdUrd), 51, 313, 330 107-132,139,176,196-198, 273- 275, 292 Chinese hamster ovary cells antibodies. 111, 112, 197 (CHO), 94, 98, 105-111, 120- BrdUrd/DNA analysis, 111-131, 126, 177, 182, 189, 192-198, 212, 209, 210, 216-219, 241-247, 217-219, 232, 233, 237, 259, 268, 273 295, 296, 303-305, 307, 352, 358, Butyrate (n-butyrate), 258, 259, 263, 367-398 268, 311, 314, 330 Chromatin condensation, 51, 183, 260-263, 270-276, 292, 296, 314- Carcinogenesis, 1 316, 329 403 404 Index Chromomycin A3 (CA3), 94, 101, 145, 148,152-156, 171, 173, 175, 127, 168, 179, 181 180, 186, 188, 192, 193, 198 Clonogenic cells (clonogens), 65, phase fractions, 95-104, 210-231 73-87, 256, 266-268, 275 asynchronous populations, 96- Clonogenicity, 1, 58, 60-62, 65, 84- 98, 210-216, 218-225 86, 93, 111, 139, 140, 145, 150, fitting methods, 218-231 153-156, 351 graphical methods, 212-218 Cclcemid, 105, 107, 182, 193, 194, perturbed populations, 98, 99, 293, 295, 303 225-231, 369-398 Colchicine, 293, 295 Cyanine dyes, 269 Ellipticine, 259 Cyclin (PCNA), 276 Elutriation, centrifugal, 74, 84, 85, Cyclohexamide, 256 114, 263, 370 Cyclophosphamide, 58, 59, 62-64, Ethidium bromide (EB), 52, 165, 67 167, 168, 171, 180, 181, 272 Cytosine arabinoside (ara-C), 52, 57, 66, 103, 105, 120-124, 126- Feulgen reaction, 11, 163, 170, 175 129,131,179, 207-210, 230, 238- Flow cytometry (FCM), 7, 8, 51, 57, 247, 256, 259 66, 74, 75, 82, 85, 93-133, 139- 145,150,154,155,163-167,170- DAPI (4,6-diamidino-2-phenyl- 176,181,194,195, 257, 264-278, indole), 168, 171, 175, 176, 186 292, 300-301, 337-345, 369, 371 Density gradient, 74, 83, 84 Fluorescein isothiocyanate (FITC), Differentiation, 35, 37, 50, 93, 126, 169, 184-190, 197 132, 147, 148 5-Fluorouracil (5-FU), 60, 62 Dihydrofoleate reductase (DHFR), Fraction of labeled mitoses (FLM) 277, 356-361 [see Percent of labeled mitoses Dihydroxyanthraquinone (DHAQ), (PLM)] 310, 311, 314 Dividing cells, fraction {see Non- GO cells (also see Nondividing cells), dividing cells) 7, 31, 34-38, 42, 43, 52,118, 255, DNA 256, 264, 278 denaturation, 51, 112, 113, 125, Gl-phase, 3, 7, 35, 37, 50-52, 74, 126, 170, 260-264, 270-272 82-84, 93-105, 109, 110, 114, polymerase, 51 115,118-120,124,127,132, 144, synthesis 146, 148, 167, 179, 192, 193, replication, 3, 7, 23, 31, 44, 49, 201-231, 258-267, 301-313, 352- 50, 74, 82, 109, 112, 127, 354 129, 193, 273, 274, 291, 292 duration (Tg,), 32, 49, 97, 99,102, rate, 15,112, 120,124,125, 216, 103, 106, 108, 111, 112, 120, 219, 291 146, 232-247, 305-309, 317- DNA damage, 351 330, 382, 392 DNA distribution analysis, 7, 50, G2-phase, 3, 7, 50, 51, 82, 85, 93, 51, 74-76, 82-84, 106, 107, 139, 96-105, 110, 114, 115, 118-120, Index 405 124,127,132,144,146,148,167, Lymphocytes, 8, 50-52, 94, 105, 184, 201-231, 305-313, 352-354 108,109,154,176,180,194, 255, duration (Tg2), 32, 49, 97, 99,102, 256, 260, 264-271, 297, 359 103, 106, 108, 111, 112, 120,, stimulation, 51, 52, 194 146, 232-247, 307, 317-30, Lymphoma (AKR), 17, 18 382-392 Gene amplification, 275 Mathematical models Granulocytes, 256 BrdUrd/DNA distributions, 216- Growth fraction {see Nondividing 218, 245-249 cells) DNA distributions, 210-215, 218- 231, 239-244, 382-392 HeLa cells, 261, 267, 268, 271 growth curves, 231, 232 Hepatocytes, 256 least-squares best fit, 219-222, Histones, 270, 278, 314, 329 398, 399 Hoechst PLM curves, 36-42, 232-237 33258,107-110,130,175,176,181, RC curves, 237, 238 197, 273, 375 stathmokinetic curves, 317-328 33342, 82,113,127,129, 168, 176, Methotrexate (MTX), 256, 264, 277 177, 182-189, 194-198, 268, MTX-FITC, 357-361 343, 371 resistance, 358-361 Hydroxyurea (HU), 52, 59, 61, 74, transport, 356-359 79, 80-82, 264, 331, 369, 370 Mithramycin, 168, 171, 179, 181, Hypoxic cells, 74, 82, 257, 259, 272, 184, 185, 197, 198, 273 278 Mitochondria, 193-196, 257-259, 269, 274 Mitotic index (MI), 58, 59 Intestinal cells, 147-151, 295 M-phase Isoleucine, 256, 268 cells, 3, 31-44, 48, 52, 82-85, 96- 99, 105, 107, 114, 118-120, Labeling index (LI), 1-24, 35, 38, 50, 127, 132, 144, 146, 148, 155, 52, 55, 59, 60, 66, 81, 86, 104, 173, 182-184, 274, 291-336 112, 147-150, 154, 243-246 duration (T^), 32, 99-101, 106, Leukemia, 40, 41, 53, 94 108-112, 120, 124, 146 AK, 13 CML, 258, 271 Nerve cells, 256 Friend erythroleukemia, 183, 184, NIH-3T3 cells, 258, 259, 265, 268, 194, 258, 261, 270, 271, 351 276 HL60, 183, 184, 194, 270 Nondividing cells L1210, 125, 126, 194, 213-215, chromatin structure, 270-273 223-226, 228, 270, 272, 276, clonogenicity, 74-79 307, 314, 352-354 growth fraction, 4, 34, 35, 42, 47- P388, 343, 350, 354-362 67, 105, 106, 174 Light scatter, 187, 188, 266, 339, metabolic properties, 257-264 343, 345, 352-355 mitochondrial probes, 269, 270 406 Index protein content, 267 Radioactivity per cell method (RC), quiescent cells 99-105, 209, 237, 238 GIQ, 188, 258, 260, 268-271, Radioautography {see Autoradio­ 274 graphy) SQ, G2Q, 258, 260, 261, 269, Radiotherapy, 48 271 Resting cells {see Nondividing cells) GID, 258, 261, 274 Retinoic acid, 263, 330 GIA, 259-262, 268-272, 278, Rhodamine 123, 168, 193-195, 301-303, 307-309, 312, 331 260-263, 269-272, 275, 311, 330, G1-, S-, G2M-arrested, 259 340 RNA content, 192, 194, 268, 269 RNA content, 51, 85, 113, 164, 167, size, 264-267 174,186,188,192-198, 257-263, Nucleoli, 50, 65 267-270, 274 Nuclear proteins, 277 S-phase, 1, 4, 31, 50-53, 58-61, 74, Olivomycin, 168, 179 79-85, 93, 95-103,112,114-120, Oncogenes, 275, 276 124,127,129,132,140,144,146, 148, 150, 153, 154, 167, 173, PCNA {see Cyclin) 196-198, 201-231, 258-261, 267, Percent labeled mitoses (PLM), 4, 309-313, 352-354, 358 10, 31-44, 65, 99, 105, 232-237, duration (Ts), 32, 35, 38, 49, 50, 296 99, 102, 106, 108, 111, 112, Plating efficiency {see Clonogenic- 120, 146, 232-247, 309, 317- ity) 328, 382-392 Poisson distribution, 17, 19 Spheroids, 256, 268, 269, 352 Primer-available DNA-dependent Stathmokinesis, 105, 291-336 DNA polymerase index (PDP Stem cells (see Clonogenic cells) index), 51, 52 Synchrony, 48, 84, 97,100,103,127, Proliferative fraction {see Nondivid- 207-208, 329, 367-402 ing cells) analysis of, 369 Propidium iodide (PI), 113, 165- cell sorting, 371 168, 177, 182-185, 197, 198 elutriation, 370, 371 Protein content, 164, 167, 174, 180, mitotic selection, 369, 370 185-188,192-198, 257-259, 263, 264 Pyronin Y, 163, 164, 186, 189, 194, Thymidine 195, 268 endogeneous pool, 5, 108, 114, 118, 119, 197, 291 Quiescent cells (Q) {see Nondivid- kinase, 5, 6 ing cells) transport, 10 Tissue dispersal, 51, 76, 82, 94, 103, Radiation, 11, 57, 61, 75, 77, 78, 81, 139-156 82, 85, 93, 146, 198, 297 chemical, 139-143, 147 Index 407 enzymatic, 82,139, 140-147,151- RIF, 54, 61, 66 154 mechanical, 139, 142-144, 151- Unbalanced growth, 259, 261, 263 154 Tritiated thymidine ('H-TdR), 1-23, Vinblastin, 293, 295, 314 31-44, 47-67, 74, 101-103, 112, Vincristin, 293, 295 127,128, 132,139, 146-148,173, 186 continuous labeling, 11, 49, 50, 65, 66, 77 labeled microcolonies, 75-79 pulse labeling, 2, 31, 32, 48, 49, 64, 66, 81,103,106, 209, 232- 234, 237, 291 specific activity, % 12, 74, 79, 80 Tumor growth fraction (see Non- dividing cells) Tumor necrosis factor, 316 Tumors adenocarcinoma, 13, 14 EMT6, 80, 84, 85, 151, 268, 352 experimental, 1, 47, 49-51, 55, 57, 64, 67, 73, 74, 271, 272 fibrosarcoma, 53, 54, 84, 151 glioma, 53, 54 hepatoma, 63 human, 40-42, 57, 86, 151, 153, 154, 296, 361 Lewis lung, 13, 53, 54, 63, 103, 104 mammary, 13, 14, 51, 53-55, 57, 58, 63, 85, 155 mastocytoma, 63 melanoma, 8, 13, 14, 40, 41 plasmacytoma, 13, 14 rat brain, 84-86, 118, 119 rhabdmyosarcoma, 57, 86, 151 sarcomas, 52, 54 KHT, 82-86, 101,103,106, 118, 120, 126, 128,140, 151,156, 230, 238-247 osteogenic (Ridgeway), 8, 9,12, 13 .
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  • Description and Analysis of Glycosidic Residues in the Largest Open Natural Products Database
    biomolecules Article Description and Analysis of Glycosidic Residues in the Largest Open Natural Products Database Jonas Schaub 1 , Achim Zielesny 2, Christoph Steinbeck 1,* and Maria Sorokina 1,* 1 Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller University, Lessing Strasse 8, 07743 Jena, Germany; [email protected] 2 Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, August-Schmidt-Ring 10, 45665 Recklinghausen, Germany; [email protected] * Correspondence: [email protected] (C.S.); [email protected] (M.S.) Abstract: Natural products (NPs), biomolecules produced by living organisms, inspire the pharma- ceutical industry and research due to their structural characteristics and the substituents from which they derive their activities. Glycosidic residues are frequently present in NP structures and have particular pharmacokinetic and pharmacodynamic importance as they improve their solubility and are often involved in molecular transport, target specificity, ligand–target interactions, and receptor binding. The COlleCtion of Open Natural prodUcTs (COCONUT) is currently the largest open database of NPs, and therefore a suitable starting point for the detection and analysis of the diversity of glycosidic residues in NPs. In this work, we report and describe the presence of circular, linear, terminal, and non-terminal glycosidic units in NPs, together with their importance in drug discovery. Keywords: natural products; glycosides; bioactivity; glycosidic residues; sugars; carbohydrates; Citation: Schaub, J.; Zielesny, A.; deglycosylation; cheminformatics; Chemistry Development Kit; CDK Steinbeck, C.; Sorokina, M. Description and Analysis of Glycosidic Residues in the Largest Open Natural Products Database. 1. Introduction Biomolecules 2021, 11, 486. https:// Natural products (NPs) are biologically active molecules produced by living organ- doi.org/10.3390/biom11040486 isms.
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  • Subject Index
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