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An Aerobic Eukaryotic Parasite with Functional Mitochondria That Likely
An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome Uwe John, Yameng Lu, Sylke Wohlrab, Marco Groth, Jan Janouškovec, Gurjeet Kohli, Felix Mark, Ulf Bickmeyer, Sarah Farhat, Marius Felder, et al. To cite this version: Uwe John, Yameng Lu, Sylke Wohlrab, Marco Groth, Jan Janouškovec, et al.. An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Science Advances , American Association for the Advancement of Science (AAAS), 2019, 5 (4), pp.eaav1110. 10.1126/sci- adv.aav1110. hal-02372304 HAL Id: hal-02372304 https://hal.archives-ouvertes.fr/hal-02372304 Submitted on 25 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. SCIENCE ADVANCES | RESEARCH ARTICLE EVOLUTIONARY BIOLOGY Copyright © 2019 The Authors, some rights reserved; An aerobic eukaryotic parasite with functional exclusive licensee American Association mitochondria that likely lacks a mitochondrial genome for the Advancement Uwe John1,2*, Yameng Lu1,3, Sylke Wohlrab1,2, Marco Groth4, Jan Janouškovec5, Gurjeet S. Kohli1,6, of Science. No claim to 1 1 7 4 1,8 original U.S. Government Felix C. Mark , Ulf Bickmeyer , Sarah Farhat , Marius Felder , Stephan Frickenhaus , Works. -
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Special Issue Featuring: a Case Study on Black Gill in Georgia Shrimp
Volume 29 • Number 4 • Winter 2015 Special Issue Featuring: A Case Study on Black Gill in Georgia Shrimp Volume 29 • Number 4 • Winter 2015 The Mystery of Black Gill: Shrimpers in the South Atlantic Face Off with a Cryptic Parasite BY JILL M. GAMBILL, ALLISON E. DOYLE, RICHARD F. LEE, PH.D., PATRICK J. GEER, ANNA N. WALKER, PH.D., LINDSEY G. PARKER, PH.D., AND MARC E. FRISCHER, PH.D. ABSTRACT In the Southeast United States, an unidentified parasite is infecting shrimp and presenting new challenges for an already struggling industry. Emerging research in Georgia is investigating the resulting condition, known as Black Gill, to better understand this newest threat to the state’s most valuable commercial fishery. Researchers, shrimpers, extension agents, and fishery managers are working collaboratively to gather baseline data on where, when, and how frequently Black Gill is occurring, as well as partnering to determine its epidemiology, dispersal, and possible intervention strategies. Savannah, Ga. – In 2013, after years of intense competition from lower priced imports and financial pressures stemming Figure 1. A Georgia white shrimp displays symptoms of the from the rising cost of fuel and insurance, Georgia shrimpers Black Gill condition around its gills. Courtesy of Rachael were poised for a comeback as they looked forward to a Randall and Chelsea Parrish, 2015 profitable year. Shrimp prices had tripled, as a consequence of a bacterial disease infecting the supply of farmed shrimp A LANDMARK YEAR from Asia (Loc et al. 2013). Commercial food shrimp landings in 2013 were the lowest Georgia shrimpers took to the water with high expectations, in recent history. -
Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome
W&M ScholarWorks VIMS Articles Virginia Institute of Marine Science 2021 Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome Troy D. Tuckey Virginia Institute of Marine Science Jillian L. Swinford Mary C. Fabrizio Virginia Institute of Marine Science Hamish J. Small Virginia Institute of Marine Science Jeffrey D. Shields Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Aquaculture and Fisheries Commons, and the Marine Biology Commons Recommended Citation Tuckey, Troy D.; Swinford, Jillian L.; Fabrizio, Mary C.; Small, Hamish J.; and Shields, Jeffrey D., Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome (2021). Marine and Coastal Fisheries, 13, 159-173. DOI: 10.1002/mcf2.10143 This Article is brought to you for free and open access by the Virginia Institute of Marine Science at W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Marine and Coastal Fisheries 13:159–173, 2021 © 2021 The Authors. Marine and Coastal Fisheries published by Wiley Periodicals LLC on behalf of American Fisheries Society ISSN: 1942-5120 online DOI: 10.1002/mcf2.10143 ARTICLE Penaeid Shrimp in Chesapeake Bay: Population Growth and Black Gill Disease Syndrome Troy D. Tuckey* Virginia Institute of Marine Science, William & Mary, 1370 Greate Road, Gloucester Point, Virginia 23062, USA Jillian L. Swinford Texas Parks and Wildlife, Coastal Fisheries Division, Perry R. Bass Marine Fisheries Research Center, 3864 Farm to Market Road 3280, Palacios, Texas 77465, USA Mary C. -
The Mitochondrial Genome and Transcriptome of the Basal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE GBEprovided by PubMed Central The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates C. J. Jackson, S. G. Gornik, and R. F. Waller* School of Botany, University of Melbourne, Australia *Corresponding author: E-mail: [email protected]. Accepted: 12 November 2011 Abstract The sister phyla dinoflagellates and apicomplexans inherited a drastically reduced mitochondrial genome (mitochondrial DNA, mtDNA) containing only three protein-coding (cob, cox1, and cox3) genes and two ribosomal RNA (rRNA) genes. In apicomplexans, single copies of these genes are encoded on the smallest known mtDNA chromosome (6 kb). In dinoflagellates, however, the genome has undergone further substantial modifications, including massive genome amplification and recombination resulting in multiple copies of each gene and gene fragments linked in numerous combinations. Furthermore, protein-encoding genes have lost standard stop codons, trans-splicing of messenger RNAs (mRNAs) is required to generate complete cox3 transcripts, and extensive RNA editing recodes most genes. From taxa investigated to date, it is unclear when many of these unusual dinoflagellate mtDNA characters evolved. To address this question, we investigated the mitochondrial genome and transcriptome character states of the deep branching dinoflagellate Hematodinium sp. Genomic data show that like later-branching dinoflagellates Hematodinium sp. also contains an inflated, heavily recombined genome of multicopy genes and gene fragments. Although stop codons are also lacking for cox1 and cob, cox3 still encodes a conventional stop codon. Extensive editing of mRNAs also occurs in Hematodinium sp. -
<I>Hematodinium Perezi</I>
Old Dominion University ODU Digital Commons Biological Sciences Faculty Publications Biological Sciences 2019 Parasitic Dinoflagellate Hematodinium perezi Prevalence in Larval and Juvenile Blue Crabs Callinectes sapidus from Coastal Bays of Virginia H. J. Small J. P. Huchin-Mian K. S. Reece K. M. Pagenkopp Lohan Mark J. Butler IV Old Dominion University, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.odu.edu/biology_fac_pubs Part of the Biology Commons, Marine Biology Commons, and the Parasitology Commons Original Publication Citation Small, H. J., Huchin-Mian, J. P., Reece, K. S., Lohan, K. M. P., Butler, M. J., & Shields, J. D. (2019). Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia. Diseases of Aquatic Organisms, 134(3), 215-222. doi:10.3354/dao03371 This Article is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Faculty Publications by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. Authors H. J. Small, J. P. Huchin-Mian, K. S. Reece, K. M. Pagenkopp Lohan, Mark J. Butler IV, and J. D. Shields This article is available at ODU Digital Commons: https://digitalcommons.odu.edu/biology_fac_pubs/391 Vol. 134: 215–222, 2019 DISEASES OF AQUATIC ORGANISMS Published online June 6 https://doi.org/10.3354/dao03371 Dis Aquat Org OPENPEN ACCESSCCESS Parasitic dinoflagellate Hematodinium perezi prevalence in larval and juvenile blue crabs Callinectes sapidus from coastal bays of Virginia H. -
Environmental DNA Metabarcoding for Simultaneous Monitoring and Ecological Assessment of Many Harmful Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.01.322941; this version posted October 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Environmental DNA Metabarcoding for Simultaneous Monitoring and Ecological Assessment of Many Harmful Algae Emily Jacobs-Palmer1, Ramón Gallego1,2, Kelly Cribari1, Abigail Keller1, Ryan P. Kelly1 1University of Washington School of Marine and Environmental Affairs 2NRC Research Associateship Program, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration. Abstract Harmful algae can have profound economic, environmental, and social consequences. As the timing, frequency, and severity of harmful algal blooms (HABs) change alongside global climate, efficient tools to monitor and understand the current ecological context of these taxa are increasingly important. Here we employ environmental DNA metabarcoding to identify patterns in a wide variety of harmful algae and associated ecological communities in the Hood Canal of Puget Sound in Washington State, USA. We track trends of presence and abundance in a series of water samples across nearly two years. We find putative harmful algal sequences in a majority of samples, suggesting that these groups are routinely present in local waters. We report patterns in variants of the economically important genus Pseudo-nitzschia (family Bacillariaceae), as well as multiple harmful algal taxa previously unknown or poorly documented in the region, including a cold-water variant from the saxitoxin-producing genus Alexandrium (family Gonyaulacaceae), two variants from the karlotoxin-producing genus Karlodinium (family Kareniaceae), and one variant from the parasitic genus Hematodinium (family Syndiniaceae). -
11 Shields FISH 98(1)
139 Abstract.–On the eastern seaboard of Mortality and hematology of blue crabs, the United States, populations of the blue crab, Callinectes sapidus, experi- Callinectes sapidus, experimentally infected ence recurring outbreaks of a parasitic dinoflagellate, Hematodinium perezi. with the parasitic dinoflagellate Epizootics fulminate in summer and autumn causing mortalities in high- Hematodinium perezi* salinity embayments and estuaries. In laboratory studies, we experimentally investigated host mortality due to the Jeffrey D. Shields disease, assessed differential hemato- Christopher M. Squyars logical changes in infected crabs, and Department of Environmental Sciences examined proliferation of the parasite. Virginia Institute of Marine Science Mature, overwintering, nonovigerous The College of William and Mary female crabs were injected with 103 or P.O. Box 1346, Gloucester Point, VA 23602, USA 105 cells of H. perezi. Mortalities began E-mail address (for J. D. Shields): [email protected] 14 d after infection, with a median time to death of 30.3 ±1.5 d (SE). Sub- sequent mortality rates were greater than 86% in infected crabs. A relative risk model indicated that infected crabs were seven to eight times more likely to Hematodinium perezi is a parasitic larger, riverine (“bayside”) fishery; die than controls and that decreases in total hemocyte densities covaried signif- dinoflagellate that proliferates in it appears most detrimental to the icantly with mortality. Hemocyte densi- the hemolymph of several crab spe- coastal (“seaside”) crab fisheries. ties declined precipitously (mean=48%) cies. In the blue crab, Callinectes Outbreaks of infestation by Hema- within 3 d of infection and exhibited sapidus, H. perezi is highly patho- todinium spp. -
Molecular Phylogeny and Surface Morphology of Colpodella Edax (Alveolata): Insights Into the Phagotrophic Ancestry of Apicomplexans
J. Eukaryot. Microbiol., 50(5), 2003 pp. 334±340 q 2003 by the Society of Protozoologists Molecular Phylogeny and Surface Morphology of Colpodella edax (Alveolata): Insights into the Phagotrophic Ancestry of Apicomplexans BRIAN S. LEANDER,a OLGA N. KUVARDINA,b VLADIMIR V. ALESHIN,b ALEXANDER P. MYLNIKOVc and PATRICK J. KEELINGa aCanadian Institute for Advanced Research, Program in Evolutionary Biology, Department of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and bDepartments of Evolutionary Biochemistry and Invertebrate Zoology, Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119 992, Russian Federation, and cInstitute for the Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavskaya oblast, 152742, Russian Federation ABSTRACT. The molecular phylogeny of colpodellids provides a framework for inferences about the earliest stages in apicomplexan evolution and the characteristics of the last common ancestor of apicomplexans and dino¯agellates. We extended this research by presenting phylogenetic analyses of small subunit rRNA gene sequences from Colpodella edax and three unidenti®ed eukaryotes published from molecular phylogenetic surveys of anoxic environments. Phylogenetic analyses consistently showed C. edax and the environmental sequences nested within a colpodellid clade, which formed the sister group to (eu)apicomplexans. We also presented surface details of C. edax using scanning electron microscopy in order to supplement previous ultrastructural investigations of this species using transmission electron microscopy and to provide morphological context for interpreting environmental sequences. The microscopical data con®rmed a sparse distribution of micropores, an amphiesma consisting of small polygonal alveoli, ¯agellar hairs on the anterior ¯agellum, and a rostrum molded by the underlying (open-sided) conoid. -
Handbook of Shrimp Diseases
LOAN COPY ONLY TAMU-H-95-001 C3 Handbook of Shrimp Diseases Aquaculture S.K. Johnson Department of Wildlife and Fisheries Sciences Texas A&M University 90-601 (rev) Introduction 2 Shrimp Species 2 Shrimp Anatomy 2 Obvious Manifestations ofShrimp Disease 3 Damaged Shells , 3 Inflammation and Melanization 3 Emaciation and Nutritional Deficiency 4 Muscle Necrosis 5 Tumors and Other Tissue Problems 5 Surface Fouling 6 Cramped Shrimp 6 Unusual Behavior 6 Developmental Problems 6 Growth Problems 7 Color Anomalies 7 Microbes 8 Viruses 8 Baceteria and Rickettsia 10 Fungus 12 Protozoa 12 Haplospora 13 Gregarina 15 Body Invaders 16 Surface Infestations 16 Worms 18 Trematodes 18 Cestodes 18 Nematodes 18 Environment 20 Publication of this handbook is a coop erative effort of the Texas A&M Univer sity Sea Grant College Program, the Texas A&M Department of Wildlife and $2.00 Fisheries Sciences and the Texas Additional copies available from: Agricultural Extension Service. Produc Sea Grant College Program tion is supported in part by Institutional 1716 Briarcrest Suite 603 Grant No. NA16RG0457-01 to Texas Bryan, Texas 77802 A&M University by the National Sea TAMU-SG-90-601(r) Grant Program, National Oceanic and 2M August 1995 Atmospheric Administration, U.S. De NA89AA-D-SG139 partment of Commerce. A/1-1 Handbook ofShrimp Diseases S.K. Johnson Extension Fish Disease Specialist This handbook is designed as an information source and tail end (abdomen). The parts listed below are apparent upon field guide for shrimp culturists, commercial fishermen, and outside examination (Fig. 1). others interested in diseases or abnormal conditions of shrimp. -
Infection by a Hematodinium-Like Parasitic Dinoflagellate Causes Pink
Journal of Invertebrate Pathology 79 (2002) 179–191 www.academicpress.com Infection by a Hematodinium-like parasitic dinoflagellate causes Pink Crab Disease (PCD) in the edible crab Cancer pagurus G.D. Stentiford,a,* M. Green,a K. Bateman,a H.J. Small,b D.M. Neil,b and S.W. Feista a Centre for Environment, Fisheries and Aquaculture Science (CEFAS) Weymouth Laboratory, Barrack Road, The Nothe, Weymouth, Dorset DT4 8UB, UK b Division of Environmental and Evolutionary Biology, Graham Kerr Building, University of Glasgow, Glasgow G12 8QQ, Scotland, UK Received 30 October 2001; accepted 2 May 2002 Abstract The edible crab (Cancer pagurus) supports a large and valuable fishery in UK waters. Much of the catch is transported live to continental Europe in specially designed live-well (‘vivier’) vehicles. During the winter of 2000/2001, many trap-caught crabs from Guernsey, Channel Islands, UK, were reportedly moribund and pink in colour. These crabs generally died before and during vivier transportation. We provide histological, immunological, and molecular evidence that this condition is associated with infection by a Hematodinium-like dinoflagellate parasite similar to that previously reported in C. pagurus and to an infection causing seasonal mass mortalities of the Norway lobster (Nephrops norvegicus). Pathologically, every altered host bore the infection, which was charac- terised by very large numbers of plasmodial and vegetative stages in the haemolymph and depletion of reserve cells in the he- patopancreas. Due to the hyperpigmentation of the carapace and appendages, we have called this infection ‘Pink Crab Disease’ (PCD). Similar Hematodinium infections cause ‘Bitter Crab Disease’ in tanner and snow crabs, which has had a negative effect on their marketability. -
Hematodinium Sp
crustacean Protozoa Hematodinium sp. - Bitter Crab Disease of Tanner Crabs I. Causative Agent and Disease IV. Transmission Bitter crab disease is caused by a Although the natural route of trans- parasitic dinoflagellate,Hematodinium mission has not been established, there sp. belonging to the protozoan phylum are likely to be several modes in which Alveolata, subphylum Dinoflagellida, the parasite is transmitted horizontally order Syndinida and family Syndiniceae. via: stages of the parasite in seawater A major feature of classification for di- that enter breaks in the cuticle during noflagellates is the biflagellated grooved mating and molting; cannibalism or dinospore stage. Obligate Hematodinium feeding on detritis containing resting parasites have been described from spores; sexual transmission via semi- several species of crustaceans, certain nal fluids of parasitized male crabs and fishes and cephalopods. In crustaceans possibly through a reservoir host such as the type species is H. perezi parasitizing bottom dwelling amphipods. The para- the European shore crab. All Hema- site and disease have been transmitted in todinium described from crustaceans the laboratory by injection of hemo- parasitize the hemolymph causing lymph containing vegetative trophonts systemic disease and mortality affecting and dinospore stages. Life history stages at least 26 species of crustacean hosts in include: trophonts which are single cells Europe, Australia and North America and have slow division; larger plasmo- including many commercially important dia with multiple nuclei; pre-spores crab species and 13 species of benthic with multiple nuclei and rapid division amphipods. followed by sporulation of biflagellated spores with a single nucleus. Spores II. Host Species are of two types, a large macrospore The bitter crab Hematodinium is and a small microspore, generally with reported from Tanner and snow crabs (C.