Infection by a Hematodinium-Like Parasitic Dinoflagellate Causes Pink
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An Aerobic Eukaryotic Parasite with Functional Mitochondria That Likely
An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome Uwe John, Yameng Lu, Sylke Wohlrab, Marco Groth, Jan Janouškovec, Gurjeet Kohli, Felix Mark, Ulf Bickmeyer, Sarah Farhat, Marius Felder, et al. To cite this version: Uwe John, Yameng Lu, Sylke Wohlrab, Marco Groth, Jan Janouškovec, et al.. An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Science Advances , American Association for the Advancement of Science (AAAS), 2019, 5 (4), pp.eaav1110. 10.1126/sci- adv.aav1110. hal-02372304 HAL Id: hal-02372304 https://hal.archives-ouvertes.fr/hal-02372304 Submitted on 25 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. SCIENCE ADVANCES | RESEARCH ARTICLE EVOLUTIONARY BIOLOGY Copyright © 2019 The Authors, some rights reserved; An aerobic eukaryotic parasite with functional exclusive licensee American Association mitochondria that likely lacks a mitochondrial genome for the Advancement Uwe John1,2*, Yameng Lu1,3, Sylke Wohlrab1,2, Marco Groth4, Jan Janouškovec5, Gurjeet S. Kohli1,6, of Science. No claim to 1 1 7 4 1,8 original U.S. Government Felix C. Mark , Ulf Bickmeyer , Sarah Farhat , Marius Felder , Stephan Frickenhaus , Works. -
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Lobsters-Identification, World Distribution, and U.S. Trade
Lobsters-Identification, World Distribution, and U.S. Trade AUSTIN B. WILLIAMS Introduction tons to pounds to conform with US. tinents and islands, shoal platforms, and fishery statistics). This total includes certain seamounts (Fig. 1 and 2). More Lobsters are valued throughout the clawed lobsters, spiny and flat lobsters, over, the world distribution of these world as prime seafood items wherever and squat lobsters or langostinos (Tables animals can also be divided rougWy into they are caught, sold, or consumed. 1 and 2). temperate, subtropical, and tropical Basically, three kinds are marketed for Fisheries for these animals are de temperature zones. From such partition food, the clawed lobsters (superfamily cidedly concentrated in certain areas of ing, the following facts regarding lob Nephropoidea), the squat lobsters the world because of species distribu ster fisheries emerge. (family Galatheidae), and the spiny or tion, and this can be recognized by Clawed lobster fisheries (superfamily nonclawed lobsters (superfamily noting regional and species catches. The Nephropoidea) are concentrated in the Palinuroidea) . Food and Agriculture Organization of temperate North Atlantic region, al The US. market in clawed lobsters is the United Nations (FAO) has divided though there is minor fishing for them dominated by whole living American the world into 27 major fishing areas for in cooler waters at the edge of the con lobsters, Homarus americanus, caught the purpose of reporting fishery statis tinental platform in the Gul f of Mexico, off the northeastern United States and tics. Nineteen of these are marine fish Caribbean Sea (Roe, 1966), western southeastern Canada, but certain ing areas, but lobster distribution is South Atlantic along the coast of Brazil, smaller species of clawed lobsters from restricted to only 14 of them, i.e. -
Decapod Crustacean Assemblages Off the West Coast of Central Italy (Western Mediterranean)
SCIENTIA MARINA 71(1) March 2007, 19-28, Barcelona (Spain) ISSN: 0214-8358 Decapod crustacean assemblages off the West coast of central Italy (western Mediterranean) EMANUELA FANELLI 1, FRANCESCO COLLOCA 2 and GIANDOMENICO ARDIZZONE 2 1 IAMC-CNR Marine Ecology Laboratory, Via G. da Verrazzano 17, 91014 Castellammare del Golfo (Trapani) Italy. E-mail: [email protected] 2 Department of Animal and Human Biology, University of Rome “la Sapienza”, V.le dell’Università 32, 00185 Rome, Italy. SUMMARY: Community structure and faunal composition of decapod crustaceans off the west coast of central Italy (west- ern Mediterranean) were investigated. Samples were collected during five trawl surveys carried out from June 1996 to June 2000 from 16 to 750 m depth. Multivariate analysis revealed the occurrence of five faunistic assemblages: 1) a strictly coastal community over sandy bottoms at depths <35 m; 2) a middle shelf community over sandy-muddy bottoms at depths between 50 and 100 m; 3) a slope edge community up to 200 m depth as a transition assemblage; 4) an upper slope community at depths between 200 and 450 m, and 5) a middle slope community at depths greater than 450 m. The existence of a shelf- slope edge transition is a characteristic of the western and central Mediterranean where a Leptometra phalangium facies is found in many areas at depths between 120 and 180 m. The brachyuran crab Liocarcinus depurator dominates the shallow muddy-sandy bottoms of the shelf, while Parapenaeus longirostris is the most abundant species from the shelf to the upper slope assemblage. -
Blue Crab (Callinectes Sapidus) Use of the Ship/Trinity/Tiger Shoal
ACCESS NUMBER: 32806-35161 STUDY TITLE: Ship Shoal: Sand, Shrimp, and Seatrout REPORT TITLE: Blue Crab (Callinectes sapidus) Use of the Ship/Trinity/Tiger Shoal Complex as a Nationally Important Spawning/Hatching/Foraging Ground: Discovery, Evaluation, and Sand Mining Recommendations based on Blue Crab, Shrimp, and Spotted Seatrout Findings CONTRACT NUMBER: 1435-01-04-CA-32806-35161 (M05AZ10660) SPONSORING OCS REGION: Gulf of Mexico APPLICABLE PLANNING AREA: Central FISCAL YEARS OF PROJECT FUNDING: 2004-2009 COMPLETION DATE OF REPORT: December 2009 COSTS: FY 2004-2009, $145,778; CUMMULATIVE PROJECT COSTS: $145,778 PROJECT MANAGER: R. E. Condrey AFFILIATION: Louisiana State University, Department of Oceanography and Coastal Sciences, School of the Coast and Environment ADDRESS: Energy, Coast, and Environment Building, Louisiana State University, Baton Rouge, LA 70803 PRINCIPAL INVESTIGATOR: R.E. Condrey KEY WORDS: Gulf of Mexico, Ship Shoal, Trinity Shoal, Tiger Shoal, Louisiana, sand mining, blue crab, white shrimp, brown shrimp, spotted seatrout, condition factor, fecundity, spawning grounds, coastal restoration BACKGROUND: The Minerals Management Service (MMS) is addressing the recent demand for U.S. continental shelf sand resources for coastal erosion management, a critical challenge to Louisiana’s ecosystems and economies. Louisiana considers barrier island restoration as a promising way to combat wetland loss, with sand mined from Ship Shoal as the most feasible sediment source. Additional sand resources on Trinity and Tiger Shoals are also being considered. Since this area supports major demersal fisheries on white and brown shrimp (Litopenaeus setiferus and Farfantepenaeus aztecus), the present study was conducted as part of a larger effort to understand the sand-mining ecology of the Ship/Trinity/Tiger Shoal Complex (STTSC). -
Dimorphism and the Functional Basis of Claw Strength in Six Brachyuran Crabs
J. Zool., Lond. (2001) 255, 105±119 # 2001 The Zoological Society of London Printed in the United Kingdom Dimorphism and the functional basis of claw strength in six brachyuran crabs Steve C. Schenk1 and Peter C. Wainwright2 1 Department of Biological Science, Florida State University, Tallahassee, Florida 32306, U.S.A. 2 Section of Evolution and Ecology, University of California, Davis, CA 95616, U.S.A. (Accepted 7 November 2000) Abstract By examining the morphological basis of force generation in the chelae (claws) of both molluscivorous and non-molluscivorous crabs, it is possible to understand better the difference between general crab claw design and the morphology associated with durophagy. This comparative study investigates the mor- phology underlying claw force production and intraspeci®c claw dimorphism in six brachyuran crabs: Callinectes sapidus (Portunidae), Libinia emarginata (Majidae), Ocypode quadrata (Ocypodidae), Menippe mercenaria (Xanthidae), Panopeus herbstii (Xanthidae), and P. obesus (Xanthidae). The crushers of the three molluscivorous xanthids consistently proved to be morphologically `strong,' having largest mechan- ical advantages (MAs), mean angles of pinnation (MAPs), and physiological cross-sectional areas (PCSAs). However, some patterns of variation (e.g. low MA in C. sapidus, indistinguishable force generation potential in the xanthids) suggested that a quantitative assessment of occlusion and dentition is needed to understand fully the relationship between force generation and diet. Interspeci®c differences in force generation potential seemed mainly to be a function of differences in chela closer muscle cross- sectional area, due to a sixfold variation in apodeme area. Intraspeci®c dimorphism was generally de®ned by tall crushers with long in-levers, though O. -
The Mitochondrial Genome and Transcriptome of the Basal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE GBEprovided by PubMed Central The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates C. J. Jackson, S. G. Gornik, and R. F. Waller* School of Botany, University of Melbourne, Australia *Corresponding author: E-mail: [email protected]. Accepted: 12 November 2011 Abstract The sister phyla dinoflagellates and apicomplexans inherited a drastically reduced mitochondrial genome (mitochondrial DNA, mtDNA) containing only three protein-coding (cob, cox1, and cox3) genes and two ribosomal RNA (rRNA) genes. In apicomplexans, single copies of these genes are encoded on the smallest known mtDNA chromosome (6 kb). In dinoflagellates, however, the genome has undergone further substantial modifications, including massive genome amplification and recombination resulting in multiple copies of each gene and gene fragments linked in numerous combinations. Furthermore, protein-encoding genes have lost standard stop codons, trans-splicing of messenger RNAs (mRNAs) is required to generate complete cox3 transcripts, and extensive RNA editing recodes most genes. From taxa investigated to date, it is unclear when many of these unusual dinoflagellate mtDNA characters evolved. To address this question, we investigated the mitochondrial genome and transcriptome character states of the deep branching dinoflagellate Hematodinium sp. Genomic data show that like later-branching dinoflagellates Hematodinium sp. also contains an inflated, heavily recombined genome of multicopy genes and gene fragments. Although stop codons are also lacking for cox1 and cob, cox3 still encodes a conventional stop codon. Extensive editing of mRNAs also occurs in Hematodinium sp. -
Nephrops Norvegicus
MARINE ECOLOGY PROGRESS SERIES Vol. 67: 141-155, 1990 Published October 18 Mar. Ecol. Prog. Ser. Effects of oxygen depletion on the ecology, blood physiology and fishery of the Norway lobster Nephrops norvegicus Susanne P. Baden, Leif Pihl, Rutger Rosenberg University of Goteborg, Marine Research Station at Kristineberg, S-450 34 Fiskebackskil. Sweden ABSTRACT: Biomass, population structure, food selection and blood (haemolymph) physiology of the Norway lobster Nephrops norvegicus (L.) were investigated in SE Kattegat, an area where low oxygen concentrations (t2 m1 1-', 30 % 02-saturation) have occurred in the bottom water for 1 to 3 mo periods in most years in the 1980's. During the study period (October 1984 to September 1989) lobster biomass decreased in the area from 10.8 kg h-' (catch per un~teffort) to zero (estimated during the last 12 nlo of the investigation). Males contributed on average 78 % of the population density, except in September 1988 during severe hypoxia when a reversed sex ratio was found and females (even berried) dominated (75 % of density). The food of N. norvegicus belonged to 4 major groups; crustaceans, echinoderms, molluscs and polychaetes. The dominant species eaten within these groups were also found to be dominants in the benthic infauna. This suggests that N. norvegicus are not feeding selectively but taking available organisms indiscriminately. In the field and in laboratory experiments N. norvegicus increased blood pigment (haemocyanin, Hcy) concentration in moderate hypoxia (20 to 40 '10 02- saturation), and reduced it in severe hypoxia (10 to 20 % 02-saturation).At 02-saturations below 15 % N. norvegicus ceased feeding and had empty stomachs. -
Acute and Long-Term Manganese Exposure and Subsequent Accumulation in Relation to Idiopathic Blindness in the American Lobster, Homarus Americanus
W&M ScholarWorks VIMS Articles Virginia Institute of Marine Science 2-1-2020 Acute and long-term manganese exposure and subsequent accumulation in relation to idiopathic blindness in the American lobster, Homarus americanus Addison T. Ochs Virginia Institute of Marine Science Jeffrey D. Shields Virginia Institute of Marine Science Gary W. Rice Michael A. Unger Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Aquaculture and Fisheries Commons Recommended Citation Ochs, Addison T.; Shields, Jeffrey D.; Rice, Gary W.; and Unger, Michael A., "Acute and long-term manganese exposure and subsequent accumulation in relation to idiopathic blindness in the American lobster, Homarus americanus" (2020). VIMS Articles. 1835. https://scholarworks.wm.edu/vimsarticles/1835 This Article is brought to you for free and open access by the Virginia Institute of Marine Science at W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Acute and long-term manganese exposure and subsequent accumulation in relation to idiopathic blindness in the American lobster, Homarus americanus Addison T. Ochs1, Jeffrey D. Shields*1, Gary W. Rice2, Michael A. Unger1 1Virginia Institute of Marine Science, The College of William and Mary, P.O. Box 1346, Gloucester Point, VA 23062, USA 2Chemistry Department, The College of William and Mary, Williamsburg, VA 23187 *Corresponding author: [email protected] (J.D. Shields) Abstract Manganese (Mn) is a hypoxic reactive metal commonly found in marine sediments. Under hypoxic conditions the metal becomes fully reduced to Mn2+ and is biologically available to the benthic community for uptake. -
Chinese Mitten Crab (Eriocheir Sinensis)
www.nonnativespecies.org For definitive identification, contact: [email protected] Chinese mitten crab (Eriocheir sinensis) Synonyms: - big sluiceway crab, Chinese freshwater edible crab, Chinese mittenhanded crab, Chinese mit- ten-handed crab, Chinese river crab, crabe chi- nois, mitten crab, river crab, Shanghai crab, villus crab - Eriocheir japonicas, E. leptognathus, E. rectus Consignments likely to come from: unknown Use: may be used for human consumption Identification difficulty: easy Identification information: - the only freshwater crab present in Britain - body (carapace) olive-green-brown, up to 8cm wide - pincers covered in a mat of fine hair resembling mittens - legs long and hairy Key ID Features Pincers covered in a mat Body (carapace) olive- of fine hair, giving the green-brown, up to 8 cm appearance of mittens wide Up to 8 cm Legs long and hairy Male and female Chinese mitten crabs are similar in appearance except their undersides Underside Underside of female of male Similar species Three other crab species are commonly imported to Britain but these are unlikely to be confused with Chinese mitten crab. Eriocheir sinensis Metacarcinus magister (Chinese mitten crab) (Dungeness crab) for comparison Body up tp to 8cm Legs long across and hairy Body up tp to 25cm across, usually under 20cm Body beige to light brown in Body (carapace) olive- Pincers covered in a mat colour with blue edges green-brown of fine hair, giving the appearance of mittens Callinectes sapidus Portunus pelagicus (Atlantic blue crab) (blue swimmer crab) Legs blue, body greyish / Body up tp to 27cm Vary in colour from dark Body up tp to 21cm greenish brown across brown, blue and purple across Pair of long, pointed Paddle shaped rear legs spines at lateral edges Paddle shaped rear legs of body Photos from: Almandine, Children’s Museum of Indianapolis, Dan Boone—United States Fish and Wildlife Service (all via Wikimedia Commons), & APHA . -
A New Pathogenic Virus in the Caribbean Spiny Lobster Panulirus Argus from the Florida Keys
DISEASES OF AQUATIC ORGANISMS Vol. 59: 109–118, 2004 Published May 5 Dis Aquat Org A new pathogenic virus in the Caribbean spiny lobster Panulirus argus from the Florida Keys Jeffrey D. Shields1,*, Donald C. Behringer Jr2 1Virginia Institute of Marine Science, The College of William & Mary, Gloucester Point, Virginia 23062, USA 2Department of Biological Sciences, Old Dominion University, Norfolk, Virginia 23529, USA ABSTRACT: A pathogenic virus was diagnosed from juvenile Caribbean spiny lobsters Panulirus argus from the Florida Keys. Moribund lobsters had characteristically milky hemolymph that did not clot. Altered hyalinocytes and semigranulocytes, but not granulocytes, were observed with light microscopy. Infected hemocytes had emarginated, condensed chromatin, hypertrophied nuclei and faint eosinophilic Cowdry-type-A inclusions. In some cases, infected cells were observed in soft con- nective tissues. With electron microscopy, unenveloped, nonoccluded, icosahedral virions (182 ± 9 nm SD) were diffusely spread around the inner periphery of the nuclear envelope. Virions also occurred in loose aggregates in the cytoplasm or were free in the hemolymph. Assembly of the nucleocapsid occurred entirely within the nucleus of the infected cells. Within the virogenic stroma, blunt rod-like structures or whorls of electron-dense granular material were apparently associated with viral assembly. The prevalence of overt infections, defined as lethargic animals with milky hemolymph, ranged from 6 to 8% with certain foci reaching prevalences of 37%. The disease was transmissible to uninfected lobsters using inoculations of raw hemolymph from infected animals. Inoculated animals became moribund 5 to 7 d before dying and they began dying after 30 to 80 d post-exposure. -
Growth Rate Variability and Lipofuscin Accumulation Rates in the Blue Crab Callinectes Sapidus
MARINE ECOLOGY PROGRESS SERIES Vol. 224: 197–205, 2001 Published December 19 Mar Ecol Prog Ser Growth rate variability and lipofuscin accumulation rates in the blue crab Callinectes sapidus Se-Jong Ju, David H. Secor, H. Rodger Harvey* Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, PO Box 38, Solomons, Maryland 20688, USA ABSTRACT: To better understand growth and age-pigment (lipofuscin) accumulation rates of the blue crab Callinectes sapidus under natural conditions, juveniles (33 to 94 mm carapace width) were reared in outdoor ponds for over 1 yr. Growth rates, measured by carapace width, during summer and fall exceeded all those reported in the literature; the initial carapace width of 59 ± 14 mm (mean ± SD) increased to 164 ± 15 mm within a 3 mo period. No growth occurred during winter months (Novem- ber to April) at low water temperatures. Growth rates of crabs in ponds were substantially higher (von Bertalanffy growth parameter K = 1.09) than those of crabs held in laboratory environments, and than rate estimates for natural populations of mid-Atlantic blue crabs. Model comparisons indicated that seasonalized von Bertalanffy growth models (r2 > 0.9) provide a better fit than the non-seasonalized model (r2 = 0.74) for pond-reared crabs and, by implication, are more appropriate for field popula- tions. Despite growth rates that varied strongly with season, lipofuscin (normalized to protein con- centration) accumulation rate was nearly constant throughout the year. Although the lipofuscin level in pond-reared crabs was significantly correlated with size (carapace width), it was more closely cor- related with chronological age.