In Vitro Stiumlation of Ergosterol from Coelastrella Terrestris by Using Squalene and Studying Antioxidant Effect
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(12) United States Patent (10) Patent No.: US 9,725,399 B2 Petrie Et Al
USO09725399B2 (12) United States Patent (10) Patent No.: US 9,725,399 B2 Petrie et al. (45) Date of Patent: Aug. 8, 2017 (54) LPID COMPRISING LONG CHAN (51) Int. Cl. POLYUNSATURATED FATTY ACDS C07C 69/587 (2006.01) CIIB I/O (2006.01) (71) Applicants: Commonwealth Scientific and (Continued) Industrial Research Organisation, (52) U.S. Cl. Acton, Australian Capital Territory CPC .............. C07C 69/587 (2013.01); A23D 9/00 (AU): Nuseed Pty Ltd, Laverton North, (2013.01); A61K 36/31 (2013.01): CIIB I/10 Victoria (AU); Grains Research and (2013.01); A61 K 2.236/00 (2013.01) Development Corporation, Barton, (58) Field of Classification Search Australian Capital Territory (AU) CPC .......................... C12N 15/8247; CO7C 69/587 See application file for complete search history. (72) Inventors: James Robertson Petrie, Goulburn (AU); Surinder Pal Singh, Downer (56) References Cited (AU); Pushkar Shrestha, Lawson U.S. PATENT DOCUMENTS (AU); Jason Timothy McAllister, Portarlington (AU); Robert Charles De 4,399.216 A 8, 1983 Axel et al. Feyter, Monash (AU); Malcolm David 5,004,863. A 4, 1991 Umbeck Devine, Vernon (CA) (Continued) (73) Assignees: COMMONWEALTH SCIENTIFIC FOREIGN PATENT DOCUMENTS AND INDUSTRIAL RESEARCH AU 667939 1, 1994 ORGANISATION, Campbell (AU): AU 200059710 B2 12/2000 NUSEED PTY LTD, Laverton North (Continued) (AU); GRAINS RESEARCH AND DEVELOPMENT CORPORATION, Barton (AU) OTHER PUBLICATIONS Ruiz-Lopez, N. et al., “Metabolic engineering of the omega-3 long (*) Notice: Subject to any disclaimer, the term of this chain polyunsaturated fatty acid biosynthetic pathway into trans patent is extended or adjusted under 35 genic plants' Journal of Experimental botany, 2012, vol. -
Distribution of the Water-Soluble Astaxanthin Binding Carotenoprotein (Astap) in Scenedesmaceae
marine drugs Article Distribution of the Water-Soluble Astaxanthin Binding Carotenoprotein (AstaP) in Scenedesmaceae Hiroki Toyoshima 1, Ami Miyata 1, Risako Yoshida 1, Taichiro Ishige 2, Shinichi Takaichi 3 and Shinji Kawasaki 1,3,* 1 Department of Bioscience, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan; [email protected] (H.T.); [email protected] (A.M.); [email protected] (R.Y.) 2 NODAI Genome Research Centre, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan; [email protected] 3 Department of Molecular Microbiology, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-3-5477-2764 Abstract: Photooxidative stress-inducible water-soluble astaxanthin-binding proteins, designated as AstaP,were identified in two Scenedesmaceae strains, Coelastrella astaxanthina Ki-4 and Scenedesmus obtusus Oki-4N; both strains were isolated under high light conditions. These AstaPs are classified as a novel family of carotenoprotein and are useful for providing valuable astaxanthin in water-soluble form; however, the distribution of AstaP orthologs in other microalgae remains unknown. Here, we exam- ined the distribution of AstaP orthologs in the family Scenedesmaceae with two model microalgae, Chlamydomonas reinhardtii and Chlorella variabilis. The expression of AstaP orthologs under photooxida- Citation: Toyoshima, H.; Miyata, A.; tive stress conditions was detected in cell extracts of Scenedesmaceae strains, but not in model algal Yoshida, R.; Ishige, T.; Takaichi, S.; strains. Aqueous orange proteins produced by Scenedesmaceae strains were shown to bind astaxanthin. -
Permian–Triassic Non-Marine Algae of Gondwana—Distributions
Earth-Science Reviews 212 (2021) 103382 Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev Review Article Permian–Triassic non-marine algae of Gondwana—Distributions, natural T affinities and ecological implications ⁎ Chris Maysa,b, , Vivi Vajdaa, Stephen McLoughlina a Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden b Monash University, School of Earth, Atmosphere and Environment, 9 Rainforest Walk, Clayton, VIC 3800, Australia ARTICLE INFO ABSTRACT Keywords: The abundance, diversity and extinction of non-marine algae are controlled by changes in the physical and Permian–Triassic chemical environment and community structure of continental ecosystems. We review a range of non-marine algae algae commonly found within the Permian and Triassic strata of Gondwana and highlight and discuss the non- mass extinctions marine algal abundance anomalies recorded in the immediate aftermath of the end-Permian extinction interval Gondwana (EPE; 252 Ma). We further review and contrast the marine and continental algal records of the global biotic freshwater ecology crises within the Permian–Triassic interval. Specifically, we provide a case study of 17 species (in 13 genera) palaeobiogeography from the succession spanning the EPE in the Sydney Basin, eastern Australia. The affinities and ecological im- plications of these fossil-genera are summarised, and their global Permian–Triassic palaeogeographic and stra- tigraphic distributions are collated. Most of these fossil taxa have close extant algal relatives that are most common in freshwater, brackish or terrestrial conditions, and all have recognizable affinities to groups known to produce chemically stable biopolymers that favour their preservation over long geological intervals. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Chemical Composition of Cystoseira Crinita Bory from the Eastern Mediterranean Zornitsa Kamenarskaa, Funda N
Chemical Composition of Cystoseira crinita Bory from the Eastern Mediterranean Zornitsa Kamenarskaa, Funda N. Yalc¸ınb, Tayfun Ersözb,I˙hsan C¸ alis¸b, Kamen Stefanova and Simeon Popova,* a Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Sofia 1113, Bulgaria. Fax: ++3592/700225. E-mail: [email protected] b Department of Pharmacognosy, Faculty of Pharmacy, Hacettepe University, TR 06100 Ankara, Turkey *Author for correspondence and reprint requests Z. Naturforsch. 57c, 584Ð590 (2002); received January 29/March 13, 2002 Cystoseira crinita, Lipids, Secondary Metabolites The chemical composition of the brown alga Cystoseira crinita Bory from the Eastern Mediterranean was investigated. Fourteen sterols have been identified, five of them for the first time in algae. The structure of one new sterol was established. The origin of seven sterols with short side chains was discussed. In the volatile fraction 19 compounds and in the polar fraction 15 compounds were identified. The main lipid classes were isolated and their fatty acid composition was established. Introduction pounds of the same sample of C. crinita was also There are more than 265 genera of brown algae performed. In the complex mixture was shown the (Chromophycota, Phaeophyceae), grouped in 15 presence of some monoterpenes, from which only orders (South and Whittick, 1987), widely spread dihydroactinidiolide was identified (Milkova et al., all over the world. Although there are many inves- 1997). The volatiles of C. barbata, collected at the tigations on their chemical composition, the infor- same time and location, contained mainly chlori- mation, concerning their taxonomy is still incom- nated ethanes, while the volatiles of C. -
The Draft Genome of Hariotina Reticulata (Sphaeropleales
Protist, Vol. 170, 125684, December 2019 http://www.elsevier.de/protis Published online date 19 October 2019 ORIGINAL PAPER Protist Genome Reports The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae a,b,2 c,d,2 b e f Yan Xu , Linzhou Li , Hongping Liang , Barbara Melkonian , Maike Lorenz , f g a,g e,1 a,g,1 Thomas Friedl , Morten Petersen , Huan Liu , Michael Melkonian , and Sibo Wang a BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China b BGI Education Center, University of Chinese Academy of Sciences, Beijing, China c China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China d Department of Biotechnology and Biomedicine, Technical University of Denmark, Copenhagen, Denmark e University of Duisburg-Essen, Campus Essen, Faculty of Biology, Universitätsstr. 5, 45141 Essen, Germany f Department ‘Experimentelle Phykologie und Sammlung von Algenkulturen’ (EPSAG), University of Göttingen, Nikolausberger Weg 18, 37073 Göttingen, Germany g Department of Biology, University of Copenhagen, Copenhagen, Denmark Submitted October 9, 2019; Accepted October 13, 2019 Hariotina reticulata P. A. Dangeard 1889 (Sphaeropleales, Chlorophyta) is a common member of the summer phytoplankton of meso- to highly eutrophic water bodies with a worldwide distribution. Here, we report the draft whole-genome shotgun sequencing of H. reticulata strain SAG 8.81. The final assembly comprises 107,596,510 bp with over 15,219 scaffolds (>100 bp). This whole-genome project is publicly available in the CNSA (https://db.cngb.org/cnsa/) of CNGBdb under the accession number CNP0000705. © 2019 Elsevier GmbH. All rights reserved. Key words: Scenedesmaceae; genome; algae; comparative genomics. -
Metabolomic Investigations Into Human Apocrine Sweat Secretions
METABOLOMIC INVESTIGATIONS INTO HUMAN APOCRINE SWEAT SECRETIONS Graham Mullard, BSc (Hons), MSc Thesis submitted to the University of Nottingham for the Degree of Doctor of Philosophy September 2011 Abstract Human axillary odour is formed by the action of Corynebacteria or Stephyloccui bacteria on odourless axilla sections. Several groups have identified axillary odorants, including 3-methyl-2-hexanoic acid (3M2H) and 3-hydroxy-3-methyl-hexenoic acid (HMHA), and how they are pre-formed and bound to amino acid conjugates. However, there is currently a lack of LC-MS methodologies and no reported NMR methods, that are required to further identify the non-volatile constituents, which would provide further information to allow understanding of the underlying physiological biochemistry of malodour. This work has incorporated a three-pronged approach. Firstly, a global strategy, through the use of NMR and LC-MS, provided a complementary unbiased overview of the metabolite composition. Metabolites were identified based on acquired standards, accurate mass and through the use of in-house or online databases. Furthermore, spectra of biological samples are inherently complex, thus, requiring a multivariate data analysis (MVDA) approach to extract the latent chemical information in the data. Secondly, semi-targeted LC-MS/MS methodologies has been used to identify metabolites with a common structural core (i.e. odour precursors) and provide structural information for the reliable identification of known and unknown metabolites. Finally, a targeted LC-MSIMS method provided an increase in specificity and sensitivity to accurately quantify known metabolites of interest (odour precursors). Initially, all methodologies were developed through the use of either an artificial sweat matrix (global strategy) or through the use of synthetic standards (semi-targeted or targeted strategy). -
Chemical Composition Analysis, Antimicrobial Activity and Cytotoxicity Screening of Moss Extracts (Moss Phytochemistry)
Molecules 2015, 20, 17221-17243; doi:10.3390/molecules200917221 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Article Chemical Composition Analysis, Antimicrobial Activity and Cytotoxicity Screening of Moss Extracts (Moss Phytochemistry) Laura Klavina 1,*, Gunta Springe 2, Vizma Nikolajeva 3, Illia Martsinkevich 4, Ilva Nakurte 4, Diana Dzabijeva 4 and Iveta Steinberga 1 1 Department of Environmental Science, University of Latvia, 19 Raina Blvd., Riga LV-1586, Latvia; E-Mail: [email protected] 2 Institute of Biology, University of Latvia, 3 Miera Street, Salaspils LV-2169, Latvia; E-Mail: [email protected] 3 Department of Microbiology and Biotechnology, University of Latvia, 4 Kronvalda Blvd., Riga LV-1010, Latvia; E-Mail: [email protected] 4 Faculty of Chemistry, University of Latvia, 19 Raina Blvd., Riga LV-1586, Latvia; E-Mails: [email protected] (I.M.); [email protected] (I.N.); [email protected] (D.D.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +371-283-480-67. Academic Editor: Derek J. McPhee Received: 29 July 2015 / Accepted: 10 September 2015 / Published: 18 September 2015 Abstract: Mosses have been neglected as a study subject for a long time. Recent research shows that mosses contain remarkable and unique substances with high biological activity. The aim of this study, accordingly, was to analyze the composition of mosses and to screen their antimicrobial and anticancer activity. The total concentration of polyphenols and carbohydrates, the amount of dry residue and the radical scavenging activity were determined for a preliminary evaluation of the chemical composition of moss extracts. -
Abstract Resumen
KATIA ANCONA-CANCHÉ1, SILVIA LÓPEZ-ADRIÁN2, MARGARITA ESPINOSA-AGUILAR3, GLORIA GARDUÑO-SOLÓRZANO4, TANIT TOLEDANO-THOMPSON1, JOSÉ NARVÁEZ- ZAPATA5 AND RUBY VALDEZ-OJEDA1 Botanical Sciences 95 (3): 527-537, 2017 Abstract Background: Scenedesmaceae family exhibits great morphological variability. High phenotypic plasticity and the pres- DOI: 10.17129/botsci.1201 ence of cryptic species have resulted in taxonomic re-assignments of Scenedesmaceae members. Study strains: Strains CORE-1, CORE-2 and CORE-3 were characterized. Copyright: © 2017 Ancona-Canché Study site: Yucatan Peninsula et al. This is an open access article Methods: Morphological analyses were executed by optical and scanning electron microscopy. Phylogenetic relation- distributed under the terms of the ships were examined by ITS-2 and ITS1-5.8S-ITS2 rDNA regions. Creative Commons Attribution Li- cense, which permits unrestricted Results: Optical and scanning electron microscopy analyses indicated spherical to ellipsoidal cells and autospore for- use, distribution, and reproduction mation correspond to members of the family Scenedesmaceae, as well as observable pyrenoid starch plates. Detailed in any medium, provided the original morphology analysis indicated that CORE-1 had visible granulations dispersed on the cell wall, suggesting identity with author and source are credited. Verrucodesmus verrucosus. However CORE-1 did not show genetic relations with this species, and was instead clus- tered close to the genus Coelastrella. CORE-2 did not show any particular structure or ornamentation, but it did show genetic relations with Coelastrella with good support. CORE-3 showed meridional ribs from end to end, one of them forked and well pronounced, and orange cells in older cultures characteristic of Coelastrella specimens. -
Riterpene Profiles of the Callus Culture of Solanum Mammosum
Makara Journal of Science, 23/2 (2019), 72-78 doi: 10.7454/mss.v23i2.11044 Sterol and Triterpene Profiles of the Callus Culture of Solanum mammosum Silvy Juliana, Suciati*, and Gunawan Indrayanto Plant Biotechnology Research Group, Department of Pharmacognosy and Phytochemistry, Faculty of Pharmacy, Universitas Airlangga, Surabaya 60286, Indonesia *E-mail: [email protected] Received January 15, 2019 | Accepted April 1, 2019 Abstract This study aimed to compare the sterol and triterpene profiles of two types of Solanum mammosum callus cultures, i.e., compact globular structure (CGS) and normal fine (F) calluses. The CGS callus resulted from the differentiation of the F callus culture after many years of subculturing. The growth rate, microscopic characteristics, and morphologies of the two callus types were determined and compared. Sterols and triterpenes were identified through thin-layer chromatog- raphy, gas chromatography–flame ionization detection, and gas chromatography–mass spectrometry analyses. The growth rate of the CGS callus was lower than that of the F callus. Microscopic identification revealed that thick, lignin- containing cell walls formed in the CGS callus but not in the F callus. The chromatographic analysis suggested that the CGS and F callus cultures had different sterol and triterpenoid profiles. The sterols and triterpenes produced by the CGC culture were more diverse than those produced by the F callus culture. Keywords: Solanum mammosum, callus, tissue culture, sterol, triterpene Introduction glaucophyllum) [8]. The callus cultures of S. mammosum and S. wrightii produce cholesterol, campesterol, Sterols can be found in all eukaryotic organisms as stigmasterol, and β-sitosterol but not solasodine [7,9]. -
Generate Metabolic Map Poster
Authors: Zheng Zhao, Delft University of Technology Marcel A. van den Broek, Delft University of Technology S. Aljoscha Wahl, Delft University of Technology Wilbert H. Heijne, DSM Biotechnology Center Roel A. Bovenberg, DSM Biotechnology Center Joseph J. Heijnen, Delft University of Technology An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Marco A. van den Berg, DSM Biotechnology Center Peter J.T. Verheijen, Delft University of Technology Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. PchrCyc: Penicillium rubens Wisconsin 54-1255 Cellular Overview Connections between pathways are omitted for legibility. Liang Wu, DSM Biotechnology Center Walter M. van Gulik, Delft University of Technology L-quinate phosphate a sugar a sugar a sugar a sugar multidrug multidrug a dicarboxylate phosphate a proteinogenic 2+ 2+ + met met nicotinate Mg Mg a cation a cation K + L-fucose L-fucose L-quinate L-quinate L-quinate ammonium UDP ammonium ammonium H O pro met amino acid a sugar a sugar a sugar a sugar a sugar a sugar a sugar a sugar a sugar a sugar a sugar K oxaloacetate L-carnitine L-carnitine L-carnitine 2 phosphate quinic acid brain-specific hypothetical hypothetical hypothetical hypothetical -
The Use of Mutants and Inhibitors to Study Sterol Biosynthesis in Plants
bioRxiv preprint doi: https://doi.org/10.1101/784272; this version posted September 26, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Title page 2 Title: The use of mutants and inhibitors to study sterol 3 biosynthesis in plants 4 5 Authors: Kjell De Vriese1,2, Jacob Pollier1,2,3, Alain Goossens1,2, Tom Beeckman1,2, Steffen 6 Vanneste1,2,4,* 7 Affiliations: 8 1: Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, 9 Belgium 10 2: VIB Center for Plant Systems Biology, VIB, Technologiepark 71, 9052 Ghent, Belgium 11 3: VIB Metabolomics Core, Technologiepark 71, 9052 Ghent, Belgium 12 4: Lab of Plant Growth Analysis, Ghent University Global Campus, Songdomunhwa-Ro, 119, Yeonsu-gu, Incheon 13 21985, Republic of Korea 14 15 e-mails: 16 K.D.V: [email protected] 17 J.P: [email protected] 18 A.G. [email protected] 19 T.B. [email protected] 20 S.V. [email protected] 21 22 *Corresponding author 23 Tel: +32 9 33 13844 24 Date of submission: sept 26th 2019 25 Number of Figures:3 in colour 26 Word count: 6126 27 28 1 bioRxiv preprint doi: https://doi.org/10.1101/784272; this version posted September 26, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.