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Morphological and Molecular Barcode Analysis of the Medicinal Tree Mimusops Coriacea (A.DC.) Miq
Morphological and molecular barcode analysis of the medicinal tree Mimusops coriacea (A.DC.) Miq. collected in Ecuador Katherine Bustamante1, Efrén Santos-Ordóñez2,3, Migdalia Miranda4, Ricardo Pacheco2, Yamilet Gutiérrez5 and Ramón Scull5 1 Facultad de Ciencias Químicas, Ciudadela Universitaria “Salvador Allende,” Universidad de Guayaquil, Guayaquil, Ecuador 2 Centro de Investigaciones Biotecnológicas del Ecuador, ESPOL Polytechnic University, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador 3 Facultad de Ciencias de la Vida, ESPOL Polytechnic University, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador 4 Facultad de Ciencias Naturales y Matemáticas, ESPOL Polytechnic University, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador 5 Instituto de Farmacia y Alimentos, Universidad de La Habana, Ciudad Habana, Cuba ABSTRACT Background: Mimusops coriacea (A.DC.) Miq., (Sapotaceae), originated from Africa, were introduced to coastal areas in Ecuador where it is not extensively used as a traditional medicine to treat various human diseases. Different therapeutically uses of the species include: analgesic, antimicrobial, hypoglycemic, inflammation and pain relieve associated with bone and articulation-related diseases. Furthermore, Mimusops coriacea could be used as anti-oxidant agent. However, botanical, chemical or molecular barcode information related to this much used species is not available from Ecuador. In this study, morphological characterization was performed from leaves, stem and seeds. Furthermore, genetic characterization was performed using molecular barcodes for rbcL, matk, ITS1 and ITS2 using DNA extracted from leaves. Methods: Macro-morphological description was performed on fresh leaves, stem Submitted 25 March 2019 and seeds. For anatomical evaluation, tissues were embedded in paraffin and Accepted 29 August 2019 transversal dissections were done following incubation with sodium hypochlorite Published 11 October 2019 and safranin for coloration and fixated later in glycerinated gelatin. -
High Tree Endemism Recorded in Kanana Kanda Isolated Forest Fragment in Wet Zone of Sri Lanka
International Journal of Agriculture, Forestry and Plantation, Vol. 2 (February.) ISSN 2462-1757 2 01 6 HIGH TREE ENDEMISM RECORDED IN KANANA KANDA ISOLATED FOREST FRAGMENT IN WET ZONE OF SRI LANKA P.K.J. De Mel Department of Agricultural and Plantation Engineering Open University of Sri Lanka, P.O. Box 21, Nawala, Nugegoda (10250), Sri Lanka Email: [email protected] K.A.J.M. Kuruppuarachchi Department of Botany Open University of Sri Lanka, P.O. Box 21, Nawala, Nugegoda (10250), Sri Lanka Email: [email protected] ABSTRACT Kanana Kanda is an isolated lowland hill with an altitude of 115m covered by natural forest with an extent of 13ha. The forest fragment located in wet zone of Sri Lanka where much species diversity and endemism is found. The forest is disappearing fast due to anthropogenic influences. Therefore the present study was carried out with the objective of assessment of existing tree flora. Reconnaissance survey was first conducted in the forest in order to gather basic information on vegetation types and floristic characteristics. Four transects with a size of 100m x 5m each were laid for sampling trees. A woody plant with a dbh equal or greater than 5cm considered as a tree. A total number of 464 trees were enumerated in the forest. Field identification of species performed with the consultation of personnel who have sufficient knowledge, skills and experience on similar vegetation. Herbarium specimens were prepared from each tree unidentified in the field and later identified those comparing with the specimens preserved in the National Herbarium. Present study, recorded a total number of 50 different species belongs to 29 families. -
Arborescent Angiosperms of Mundanthurai Range in The
Check List 8(5): 951–962, 2012 © 2012 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution Arborescent Angiosperms of Mundanthurai Range in PECIES S the Kalakad-Mundanthurai Tiger Reserve (KMTR) of the OF southern Western Ghats, India ISTS L Paulraj Selva Singh Richard 1* and Selvaraj Abraham Muthukumar 2 1 Madras Christian College, Department of Botany, Chennai – 600 059, Tamil Nadu, India. 2 St. John’s College, Department of Botany, Tirunelveli, 627 002, Tamil Nadu, India. [email protected] * Corresponding author. E-mail: Abstract: The present study was carried out to document the diversity of arborescent angiosperm taxa of Mundanthurai representingRange in the 175Kalakad-Mundanthurai genera in 65 families Tiger were Reserve recorded. (KMTR) The most of the speciose southern families Western are Euphorbiaceae Ghats in India. (27 During spp.), the Rubiaceae floristic survey carried out from January 2008 to December 2010, a total of 247 species and intraspecific taxa of trees and shrubs to this region which includes Agasthiyamalaia pauciflora, Elaeocarpus venustus, Garcinia travancorica, Gluta travancorica, (17Goniothalamus spp.), Myrtaceae rhynchantherus, (14 spp.), Lauraceae Homalium (13 travancoricum, spp.) and Annonaceae Homaium (11 jainii, spp.). OropheaOf the 247 uniflora, taxa, 27 Phlogacanthus species are endemic albiflorus, only Polyalthia shendurunii, Symplocos macrocarpa and Symplocos sessilis . This clearly signifies that this range is relevant to the conservation of the local flora. Introduction India for conserving global biological diversity and also The Western Ghats is one of the biodiversity hotspots declared as Regional Centre of Endemism in the Indian of the world (Myers et al. -
Obdiplostemony: the Occurrence of a Transitional Stage Linking Robust Flower Configurations
Annals of Botany 117: 709–724, 2016 doi:10.1093/aob/mcw017, available online at www.aob.oxfordjournals.org VIEWPOINT: PART OF A SPECIAL ISSUE ON DEVELOPMENTAL ROBUSTNESS AND SPECIES DIVERSITY Obdiplostemony: the occurrence of a transitional stage linking robust flower configurations Louis Ronse De Craene1* and Kester Bull-Herenu~ 2,3,4 1Royal Botanic Garden Edinburgh, Edinburgh, UK, 2Departamento de Ecologıa, Pontificia Universidad Catolica de Chile, 3 4 Santiago, Chile, Escuela de Pedagogıa en Biologıa y Ciencias, Universidad Central de Chile and Fundacion Flores, Ministro Downloaded from https://academic.oup.com/aob/article/117/5/709/1742492 by guest on 24 December 2020 Carvajal 30, Santiago, Chile * For correspondence. E-mail [email protected] Received: 17 July 2015 Returned for revision: 1 September 2015 Accepted: 23 December 2015 Published electronically: 24 March 2016 Background and Aims Obdiplostemony has long been a controversial condition as it diverges from diploste- mony found among most core eudicot orders by the more external insertion of the alternisepalous stamens. In this paper we review the definition and occurrence of obdiplostemony, and analyse how the condition has impacted on floral diversification and species evolution. Key Results Obdiplostemony represents an amalgamation of at least five different floral developmental pathways, all of them leading to the external positioning of the alternisepalous stamen whorl within a two-whorled androe- cium. In secondary obdiplostemony the antesepalous stamens arise before the alternisepalous stamens. The position of alternisepalous stamens at maturity is more external due to subtle shifts of stamens linked to a weakening of the alternisepalous sector including stamen and petal (type I), alternisepalous stamens arising de facto externally of antesepalous stamens (type II) or alternisepalous stamens shifting outside due to the sterilization of antesepalous sta- mens (type III: Sapotaceae). -
Mise En Page 1
CONSERVATOIRE ET JARDIN BOTANIQUES DE LA VILLE DE GENÈVE – RAPPORT ANNUEL 20 13 SOMMAIRE AVANT-PROPOS ET ÉDITORIAL ................................................................................... 2–3 STRUCTURE ET MISSIONS .......................................................................................... 4–5 LES COLLECTIONS DE NOS HERBIERS ....................................................................... 6–9 LES COLLECTIONS DE NOTRE BIBLIOTHÈQUE ........................................................ 10-11 LE JARDIN: UNE COLLECTION VIVANTE .................................................................. 12-15 DES MISSIONS D’EXPLORATION ET DE RÉCOLTE .................................................... 16-19 LES PROJETS DE RECHERCHE ................................................................................ 20-27 CONSERVATION ET PROTECTION DE LA FLORE ...................................................... 28-33 LES SYSTÈMES D’INFORMATIONS SUR LA BIODIVERSITÉ ...................................... 34-37 ÉDITIONS, ENSEIGNEMENT & FORMATION .............................................................. 38-41 ÉDUCATION ENVIRONNEMENTALE ET COMMUNICATION ........................................ 42-45 LES CENTRES HÉBERGÉS AUX CJBG ...................................................................... 46-49 INFO FLORA ................................................................................................................ 46-47 PROSPECIERARA ......................................................................................................... -
Forests Beneath the Grass
FoForestsrests beneathBeneath the grassGrass Proceedings of the regional workshop on advancing the application of assisted natural regeneration for eective low-cost forest restoration Naturally-regenerated young tree seedling hidden under the grass RAP PUBLICATION 2010/11 Forests beneath the grass Proceedings of the Regional Workshop on Advancing the Application of Assisted Natural Regeneration for Effective Low-Cost Restoration Bohol, Philippines, 19-22 May 2009 Edited by Patrick B. Durst, Percy Sajise and Robin N. Leslie FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS REGIONAL OFFICE FOR ASIA AND THE PACIFIC Bangkok, 2011 The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. ISBN 978-92-5-106639-3 All rights reserved. FAO encourages reproduction and dissemination of material in this information product. Non-commercial uses will be authorized free of charge. Reproduction for resale or other commercial purposes, including educational purposes, may incur fees. Applications for permission to reproduce or disseminate FAO copyright materials and all other queries on rights and licences, should be addressed by e-mail to [email protected] or to the Chief, Publishing Policy and Support Branch, Office of Knowledge Exchange, Research and Extension, FAO,Viale delle Terme di Caracalla, 00153 Rome, Italy. -
Accounting for Variation of Substitution Rates Through Time in Bayesian Phylogeny Reconstruction of Sapotoideae (Sapotaceae)
Molecular Phylogenetics and Evolution 39 (2006) 706–721 www.elsevier.com/locate/ympev Accounting for variation of substitution rates through time in Bayesian phylogeny reconstruction of Sapotoideae (Sapotaceae) Jenny E.E. Smedmark ¤, Ulf Swenson, Arne A. Anderberg Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden Received 9 September 2005; revised 4 January 2006; accepted 12 January 2006 Available online 21 February 2006 Abstract We used Bayesian phylogenetic analysis of 5 kb of chloroplast DNA data from 68 Sapotaceae species to clarify phylogenetic relation- ships within Sapotoideae, one of the two major clades within Sapotaceae. Variation in substitution rates through time was shown to be a very important aspect of molecular evolution for this data set. Relative rates tests indicated that changes in overall rate have taken place in several lineages during the history of the group and Bayes factors strongly supported a covarion model, which allows the rate of a site to vary over time, over commonly used models that only allow rates to vary across sites. Rate variation over time was actually found to be a more important model component than rate variation across sites. The covarion model was originally developed for coding gene sequences and has so far only been tested for this type of data. The fact that it performed so well with the present data set, consisting mainly of data from noncoding spacer regions, suggests that it deserves a wider consideration in model based phylogenetic inference. Repeatability of phylogenetic results was very diYcult to obtain with the more parameter rich models, and analyses with identical settings often supported diVerent topologies. -
Vascular Plant Composition and Diversity of a Coastal Hill Forest in Perak, Malaysia
www.ccsenet.org/jas Journal of Agricultural Science Vol. 3, No. 3; September 2011 Vascular Plant Composition and Diversity of a Coastal Hill Forest in Perak, Malaysia S. Ghollasimood (Corresponding author), I. Faridah Hanum, M. Nazre, Abd Kudus Kamziah & A.G. Awang Noor Faculty of Forestry, Universiti Putra Malaysia 43400, Serdang, Selangor, Malaysia Tel: 98-915-756-2704 E-mail: [email protected] Received: September 7, 2010 Accepted: September 20, 2010 doi:10.5539/jas.v3n3p111 Abstract Vascular plant species and diversity of a coastal hill forest in Sungai Pinang Permanent Forest Reserve in Pulau Pangkor at Perak were studied based on the data from five one hectare plots. All vascular plants were enumerated and identified. Importance value index (IVI) was computed to characterize the floristic composition. To capture different aspects of species diversity, we considered five different indices. The mean stem density was 7585 stems per ha. In total 36797 vascular plants representing 348 species belong to 227 genera in 89 families were identified within 5-ha of a coastal hill forest that is comprises 4.2% species, 10.7% genera and 34.7% families of the total taxa found in Peninsular Malaysia. Based on IVI, Agrostistachys longifolia (IVI 1245), Eugeissona tristis (IVI 890), Calophyllum wallichianum (IVI 807), followed by Taenitis blechnoides (IVI 784) were the most dominant species. The most speciose rich families were Rubiaceae having 27 species, followed by Dipterocarpaceae (21 species), Euphorbiaceae (20 species) and Palmae (14 species). According to growth forms, 57% of all species were trees, 13% shrubs, 10% herbs, 9% lianas, 4% palms, 3.5% climbers and 3% ferns. -
New Genetic Markers for Sapotaceae Phylogenomics: More Than 600 Nuclear Genes Applicable from Family to Population Levels
Molecular Phylogenetics and Evolution 160 (2021) 107123 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels Camille Christe a,b,*,1, Carlos G. Boluda a,b,1, Darina Koubínova´ a,c, Laurent Gautier a,b, Yamama Naciri a,b a Conservatoire et Jardin botaniques, 1292 Chamb´esy, Geneva, Switzerland b Laboratoire de botanique syst´ematique et de biodiversit´e de l’Universit´e de Gen`eve, Department of Botany and Plant Biology, 1292 Chamb´esy, Geneva, Switzerland c Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchatel,^ Rue Emile-Argand 11, 2000 Neuchatel,^ Switzerland ARTICLE INFO ABSTRACT Keywords: Some tropical plant families, such as the Sapotaceae, have a complex taxonomy, which can be resolved using Conservation Next Generation Sequencing (NGS). For most groups however, methodological protocols are still missing. Here Gene capture we identified531 monocopy genes and 227 Short Tandem Repeats (STR) markers and tested them on Sapotaceae STR using target capture and NGS. The probes were designed using two genome skimming samples from Capur Phylogenetics odendron delphinense and Bemangidia lowryi, both from the Tseboneae tribe, as well as the published Manilkara Population genetics Species tree zapota transcriptome from the Sapotoideae tribe. We combined our probes with 261 additional ones previously Tropical trees published and designed for the entire angiosperm group. On a total of 792 low-copy genes, 638 showed no signs of paralogy and were used to build a phylogeny of the family with 231 individuals from all main lineages. -
PERKECAMBAHAN DAN PENYIMPANAN BIJI NYATOH (Palaquium Rostratum (Miq.) Burck)
PERKECAMBAHAN DAN PENYIMPANAN BIJI NYATOH (Palaquium rostratum (Miq.) Burck) Elly Kristiati Agustin dan Hary Wawangningrum Pusat Konservasi Tumbuhan Kebun Raya Bogor-LIPI Jl. Ir. H. Juanda No. 13 Bogor email: [email protected] ABSTRACT Palaquium rostratum is a gigantic tree found in the Malay Peninsula, Sumatra, Borneo, and Java; in the Peninsula it has been obtained in Penang, Perak, Pahang, and Singapore, in a way that suggests that it is of general distribution; but by towering above the forest canopy it is easily overlooked. The research was conducted to study the seed germination of P. rostratum and to study the effect of seed storage. The study was carried out in the Bogor Botanic Gardens on February 2008. Seeds of P. rostratum were starting to germinate epigeally in 17 days after sowing and the seeds can be stored at room temperature for two week with a viability of 61.32% and 26.41% water content. Key words: Germination, viability, storage, Palaquium rostratum. PENDAHULUAN Palaquium merupakan marga tumbuhan tropis anggota suku Sapotaceae, terdiri atas 110 jenis dan tersebar dari India Barat dan Sri Lanka sampai China Selatan dan Polynesia Timur (Samoa). Pusat penyebaran ialah Malesia Barat, kebanyakan ditemukan di Filiphina (30 jenis) dan Borneo (35 jenis), beberapa diantaranya endemik (Soerianegara et al. (eds.) 1994). Palaquium rostratum yang merupakan flora identitas Bangka Belitung memiliki nama Internasional gutta percha. Sinonim tumbuhan ini yaitu Palaquium bancanum Burck dan Croixia rostrata (Miq.) Baehni. Pada tiap daerah P. rostratum memiliki nama yang berlainan diantaranya: balam bakulo (Palembang), balam pucung (Kubu), nyatoh darat (Bangka), nyatoh pisang (Bangka & Belitung), balam pucung, nyatoh terung, pulai pipit (Minangkabau), nyatoh terung (Lampung), nagasari (Jawa). -
Sri Lanka Wildlife Tour Report 2013 Birdwatching Butterfly Mammal
Sri Lanka The Enchanted Isle A Greentours Trip Report 18th February to 8th March 2013 Led by Paul Cardy Trip Report and Systematic Lists written by Paul Cardy Day 0/1 Monday February 18th, Tuesday February 19th Journey to Sri Lanka, and to Kandy Both flights arrived on schedule, and Mr Silva was at the airport early in the morning to meet first the group arriving from London, and shortly afterwards me coming from Italy via Abu Dhabi. Once aboard the spacious bus we drove through reasonably quiet streets in the dark although there was already quite a bit of traffic on the road. Once light, very common birds began with House and Jungle Crows; a selection of egrets; Red-vented Bulbul; White-throated Kingfisher; and Rose-ringed Parakeets. We also drove past a very large Flying Fox roost. After about two and a half hours we reached a bustling Kandy, and our hotel, The Suisse. Around the lake were Indian Cormorants, Spot-billed Pelican, Little and Great Egrets, and Black-crowned Night Herons. The staff at the hotel gave a warm welcome and it was impressive that they let us check in so early in the day, although there was a slight wait for some of the rooms. While we waited an excellent buffet breakfast was enjoyed. A Common Evening Brown perched on the walls of the hotel. Then it was time for sleep, and most of us managed a few hours, with lunch optional, and delicious for those who attended. We met up at 3.30 for an afternoon excursion. -
Collaborative Planning for Development of the Pelawan Biodiversity Park in Bangka, Indonesia
BIODIVERSITAS ISSN: 1412-033X Volume 18, Number 4, October 2017 E-ISSN: 2085-4722 Pages: 1602-1610 DOI: 10.13057/biodiv/d180439 Collaborative planning for development of the Pelawan Biodiversity Park in Bangka, Indonesia DIAN AKBARINI1,2, JOHAN ISKANDAR1,3,4, RUHYAT PARTASASMITA3,4,♥ 1Postgraduate of Environmental Science (PSMIL & DIL), Universitas Padjadjaran. Jatinangor, Sumedang 45363, West Java, Indonesia 2Board of Development Planning and Regional Develoment Research of the Central Bangka District. Jl. Titian Puspa 2, Koba, Central Bangka District, Bangka-Belitung Archipelago Province, Indonesia 3Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran. Jl. Raya Bandung-Sumedang Km 21, Jatinangor, Sumedang 45363, West Java, Indonesia. Tel.: +62-22-77912. ♥email: [email protected], [email protected] 4Institute of Ecology (PPSDAL), Universitas Padjadjaran. Jatinangor, Sumedang 45363, West Java, Indonesia Manuscript received: 13 June 2017. Revision accepted: 12 October 2017. Abstract. Akbarini D, Iskandar J, Partasasmita R. 2017. Collaborative planning for development of the Pelawan Biodiversity Park in Bangka, Indonesia. Biodiversitas 18: 1602-1610. Pelawan Biodiversity Park is located in the village of Namang, Sub-district of Namang, District of Central Bangka. The Pelawan Biodiversity Park with a size of approximately 47 hectares is intended as a conservation area in Bangka to protect various distinctive plants and animals, especially the plant species Tristaniopsis merguensis (Griff.) Peter G.Wilson & J.T.Waterh. A preliminary review of Pelawan Biodiversity Park management planning was undertaken between January and March 2017. The purpose of this preliminary review was to obtain information for planning and managing the Pelawan Biodiversity Park which has an important function for conservation, ecotourism and research in the Central Bangka District.