First Complete Fossil Scleropages (Osteoglossomorpha)
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§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
Transcriptome Ortholog Alignment Sequence Tools (TOAST) for Phylogenomic Dataset Assembly
Transcriptome Ortholog Alignment Sequence Tools (TOAST) for Phylogenomic Dataset Assembly Dustin J. Wcisel North Carolina State University J. Thomas Howard North Carolina State University Jeffrey A. Yoder North Carolina State University Alex Dornburg ( [email protected] ) NC Museum of Natural Sciences https://orcid.org/0000-0003-0863-2283 Software Keywords: BUSCO ortholog assembly, Cetacean and teleost sh phylogeny, Missing Data Visualization, Transcriptome, Concatenated Alignment Posted Date: March 12th, 2020 DOI: https://doi.org/10.21203/rs.2.16269/v4 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at BMC Evolutionary Biology on March 30th, 2020. See the published version at https://doi.org/10.1186/s12862-020-01603-w. Page 1/18 Abstract Background Advances in next-generation sequencing technologies have reduced the cost of whole transcriptome analyses, allowing characterization of non-model species at unprecedented levels. The rapid pace of transcriptomic sequencing has driven the public accumulation of a wealth of data for phylogenomic analyses, however lack of tools aimed towards phylogeneticists to eciently identify orthologous sequences currently hinders effective harnessing of this resource. Results We introduce TOAST, an open source R software package that can utilize the ortholog searches based on the software Benchmarking Universal Single-Copy Orthologs (BUSCO) to assemble multiple sequence alignments of orthologous loci from transcriptomes for any group of organisms. By streamlining search, query, and alignment, TOAST automates the generation of locus and concatenated alignments, and also presents a series of outputs from which users can not only explore missing data patterns across their alignments, but also reassemble alignments based on user-dened acceptable missing data levels for a given research question. -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................ -
Fisheries Guidelines for Design of Stream Crossings
Fish Habitat Guideline FHG 001 FISH PASSAGE IN STREAMS Fisheries guidelines for design of stream crossings Elizabeth Cotterell August 1998 Fisheries Group DPI ISSN 1441-1652 Agdex 486/042 FHG 001 First published August 1998 Information contained in this publication is provided as general advice only. For application to specific circumstances, professional advice should be sought. The Queensland Department of Primary Industries has taken all reasonable steps to ensure the information contained in this publication is accurate at the time of publication. Readers should ensure that they make appropriate enquiries to determine whether new information is available on the particular subject matter. © The State of Queensland, Department of Primary Industries 1998 Copyright protects this publication. Except for purposes permitted by the Copyright Act, reproduction by whatever means is prohibited without the prior written permission of the Department of Primary Industries, Queensland. Enquiries should be addressed to: Manager Publishing Services Queensland Department of Primary Industries GPO Box 46 Brisbane QLD 4001 Fisheries Guidelines for Design of Stream Crossings BACKGROUND Introduction Fish move widely in rivers and creeks throughout Queensland and Australia. Fish movement is usually associated with reproduction, feeding, escaping predators or dispersing to new habitats. This occurs between marine and freshwater habitats, and wholly within freshwater. Obstacles to this movement, such as stream crossings, can severely deplete fish populations, including recreational and commercial species such as barramundi, mullet, Mary River cod, silver perch, golden perch, sooty grunter and Australian bass. Many Queensland streams are ephemeral (they may flow only during the wet season), and therefore crossings must be designed for both flood and drought conditions. -
Mcabee Fossil Site Assessment
1 McAbee Fossil Site Assessment Final Report July 30, 2007 Revised August 5, 2007 Further revised October 24, 2008 Contract CCLAL08009 by Mark V. H. Wilson, Ph.D. Edmonton, Alberta, Canada Phone 780 435 6501; email [email protected] 2 Table of Contents Executive Summary ..............................................................................................................................................................3 McAbee Fossil Site Assessment ..........................................................................................................................................4 Introduction .......................................................................................................................................................................4 Geological Context ...........................................................................................................................................................8 Claim Use and Impact ....................................................................................................................................................10 Quality, Abundance, and Importance of the Fossils from McAbee ............................................................................11 Sale and Private Use of Fossils from McAbee..............................................................................................................12 Educational Use of Fossils from McAbee.....................................................................................................................13 -
The Air-Breathing Behaviour of Brevimyrus Niger (Osteoglossomorpha, Mormyridae)
Journal of Fish Biology (2007) 71, 279–283 doi:10.1111/j.1095-8649.2007.01473.x, available onlineathttp://www.blackwell-synergy.com The air-breathing behaviour of Brevimyrus niger (Osteoglossomorpha, Mormyridae) T. MORITZ* AND K. E. LINSENMAIR Lehrstuhl fur¨ Tiero¨kologie und Tropenbiologie, Theodor-Boveri-Institut, Universita¨t Wurzburg,¨ Am Hubland, 97074 Wurzburg,¨ Germany (Received 2 May 2006, Accepted 6 February 2007) Brevimyrus niger is reported to breathe atmospheric air, confirming previous documenta- tion of air breathing in this species. Air is taken up by rising to the water surface and gulping, or permanently resting just below the surface, depending on the environmental conditions. # 2007 The Authors Journal compilation # 2007 The Fisheries Society of the British Isles Key words: elephantfishes; Osteoglossomorpha; weakly electric fish. The Mormyridae consists of 201 weakly electric fishes endemic to Africa (Nelson, 2006). They belong to the Osteoglossomorpha among which air-breathing behaviour is known from several families. All genera of the Osteoglossidae are able to breathe atmospheric air utilizing their swimbladder as a respiratory organ, i.e. Heterotis niloticus (Cuvier) (Luling,¨ 1977), Arapaima gigas (Schinz) (Luling,¨ 1964, 1977). Similarly, Pantodon buchholzi Peters (Schwarz, 1969), which is the only member of the Pantodontidae, and the members of the Notopteridae (Graham, 1997) are air-breathers. A close relative to the mormyrids, Gymnarchus niloticus Cuvier, the only member of the Gymnarchidae, is also well known to breathe air (Hyrtl, 1856; Bertyl, 1958). In the remaining two families within the Osteoglossomorpha air breathing has never been reported from the Hiodontidae (Graham, 1997) and only for a single species, Brevimyrus niger (Gunther),¨ within the Mormyridae (Benech & Lek, 1981; Bigorne, 2003). -
A Review of the Systematic Biology of Fossil and Living Bony-Tongue Fishes, Osteoglossomorpha (Actinopterygii: Teleostei)
Neotropical Ichthyology, 16(3): e180031, 2018 Journal homepage: www.scielo.br/ni DOI: 10.1590/1982-0224-20180031 Published online: 11 October 2018 (ISSN 1982-0224) Copyright © 2018 Sociedade Brasileira de Ictiologia Printed: 30 September 2018 (ISSN 1679-6225) Review article A review of the systematic biology of fossil and living bony-tongue fishes, Osteoglossomorpha (Actinopterygii: Teleostei) Eric J. Hilton1 and Sébastien Lavoué2,3 The bony-tongue fishes, Osteoglossomorpha, have been the focus of a great deal of morphological, systematic, and evolutio- nary study, due in part to their basal position among extant teleostean fishes. This group includes the mooneyes (Hiodontidae), knifefishes (Notopteridae), the abu (Gymnarchidae), elephantfishes (Mormyridae), arawanas and pirarucu (Osteoglossidae), and the African butterfly fish (Pantodontidae). This morphologically heterogeneous group also has a long and diverse fossil record, including taxa from all continents and both freshwater and marine deposits. The phylogenetic relationships among most extant osteoglossomorph families are widely agreed upon. However, there is still much to discover about the systematic biology of these fishes, particularly with regard to the phylogenetic affinities of several fossil taxa, within Mormyridae, and the position of Pantodon. In this paper we review the state of knowledge for osteoglossomorph fishes. We first provide an overview of the diversity of Osteoglossomorpha, and then discuss studies of the phylogeny of Osteoglossomorpha from both morphological and molecular perspectives, as well as biogeographic analyses of the group. Finally, we offer our perspectives on future needs for research on the systematic biology of Osteoglossomorpha. Keywords: Biogeography, Osteoglossidae, Paleontology, Phylogeny, Taxonomy. Os peixes da Superordem Osteoglossomorpha têm sido foco de inúmeros estudos sobre a morfologia, sistemática e evo- lução, particularmente devido à sua posição basal dentre os peixes teleósteos. -
A Review of the Plants of the Princeton Chert (Eocene, British Columbia, Canada)
Botany A review of the plants of the Princeton chert (Eocene, British Columbia, Canada) Journal: Botany Manuscript ID cjb-2016-0079.R1 Manuscript Type: Review Date Submitted by the Author: 07-Jun-2016 Complete List of Authors: Pigg, Kathleen; Arizona State University, School of Life Sciences DeVore, Melanie; Georgia College and State University, Department of Biological &Draft Environmental Sciences Allenby Formation, Aquatic plants, Fossil monocots, Okanagan Highlands, Keyword: Permineralized floras https://mc06.manuscriptcentral.com/botany-pubs Page 1 of 75 Botany A review of the plants of the Princeton chert (Eocene, British Columbia, Canada) Kathleen B. Pigg , School of Life Sciences, Arizona State University, PO Box 874501, Tempe, AZ 85287-4501, USA Melanie L. DeVore , Department of Biological & Environmental Sciences, Georgia College & State University, 135 Herty Hall, Milledgeville, GA 31061 USA Corresponding author: Kathleen B. Pigg (email: [email protected]) Draft 1 https://mc06.manuscriptcentral.com/botany-pubs Botany Page 2 of 75 A review of the plants of the Princeton chert (Eocene, British Columbia, Canada) Kathleen B. Pigg and Melanie L. DeVore Abstract The Princeton chert is one of the most completely studied permineralized floras of the Paleogene. Remains of over 30 plant taxa have been described in detail, along with a diverse assemblage of fungi that document a variety of ecological interactions with plants. As a flora of the Okanagan Highlands, the Princeton chert plants are an assemblage of higher elevation taxa of the latest early to early middle Eocene, with some components similar to those in the relatedDraft compression floras. However, like the well known floras of Clarno, Appian Way, the London Clay, and Messel, the Princeton chert provides an additional dimension of internal structure. -
Revisiting the Origin of the Vertebrate Hox14 by Including Its Relict
Revisiting the Origin of the Vertebrate Hox14 by Including Its Relict Sarcopterygian Members 1 2 3 1 2 NA1HALIE FEINER • , ROLF ERICSSON , AXEL MEYER • .4, 1 2 AND SHIGEHIRO KURAKU • .4* 1Department of Biology, University of Konstanz, Konstanz, Germany 21ntemational Max-Planck. Research School (IMPRS) for Organisrnal Biology, University of Konstanz, Konstanz, Germany 3Biological Sciences, Macquarie University, Sydney. New South Wales, Australia 4Konstanz Research School Chemical Biology (KoRS-CB), University of Konstanz, Konstanz, Germany Bilaterian Hox genes play pivotal roles in the specification of positional identities along the anteroposterior axis. Particularly in vertebrates, their regulation is tightly coordinated by tandem arrays of genes [paralogy groups (PGs)] in four gene clusters (HoxA-0). Traditionally, the uninterrupted Hox cluster (Hox7-14} of the invertebrate chordate amphioxus was regarded as an archetype of the vertebrate Hox clusters. In contrast to Hox1-13 that are globally regulated by the "Hox code" and are often phylogenetically conserved, vertebrate Hox14 members were only recently revea led to be present in an African lungfish, a coelacanth, chondrichthyans and a lamprey, and decoupled from the Hox code. In this study we performed a PCR-based search of Hox14 members from diverse vertebrates, and identified one in the Australian lungfish, Neoceratodus forsteri. Based on a molecular phylogenetic analysis, this gene was designated NfHoxA74. Our real-time RT-PCR suggested its hindgut-associated expression, previously observed also in cloudy catshar1< Hox074 and lamprey Hox74<x. It is likely that this altered expression scheme was established before the Hox cluster quadruplication, probably at the base of extant vertebrates. To investigate the origin of vertebrate Hox14, by including this sarcopterygian Hox14 member, we performed focused phylogenetic analyses on its relationship with other vertebrate posterior Hox PGs (Hox9-13) as well as amphioxus posterior Hox genes. -
Evolution of the Nitric Oxide Synthase Family in Vertebrates and Novel
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.14.448362; this version posted June 14, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Evolution of the nitric oxide synthase family in vertebrates 2 and novel insights in gill development 3 4 Giovanni Annona1, Iori Sato2, Juan Pascual-Anaya3,†, Ingo Braasch4, Randal Voss5, 5 Jan Stundl6,7,8, Vladimir Soukup6, Shigeru Kuratani2,3, 6 John H. Postlethwait9, Salvatore D’Aniello1,* 7 8 1 Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 80121, 9 Napoli, Italy 10 2 Laboratory for Evolutionary Morphology, RIKEN Center for Biosystems Dynamics 11 Research (BDR), Kobe, 650-0047, Japan 12 3 Evolutionary Morphology Laboratory, RIKEN Cluster for Pioneering Research (CPR), 2-2- 13 3 Minatojima-minami, Chuo-ku, Kobe, Hyogo, 650-0047, Japan 14 4 Department of Integrative Biology and Program in Ecology, Evolution & Behavior (EEB), 15 Michigan State University, East Lansing, MI 48824, USA 16 5 Department of Neuroscience, Spinal Cord and Brain Injury Research Center, and 17 Ambystoma Genetic Stock Center, University of Kentucky, Lexington, Kentucky, USA 18 6 Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech 19 Republic 20 7 Division of Biology and Biological Engineering, California Institute of Technology, 21 Pasadena, CA, USA 22 8 South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, 23 Faculty of Fisheries and Protection of Waters, University of South Bohemia in Ceske 24 Budejovice, Vodnany, Czech Republic 25 9 Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA 26 † Present address: Department of Animal Biology, Faculty of Sciences, University of 27 Málaga; and Andalusian Centre for Nanomedicine and Biotechnology (BIONAND), 28 Málaga, Spain 29 30 * Correspondence: [email protected] 31 32 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.14.448362; this version posted June 14, 2021. -
Life History Patterns and Biogeography: An
LIFE HISTORY PATTERNS AND Lynne R. Parenti2 BIOGEOGRAPHY: AN INTERPRETATION OF DIADROMY IN FISHES1 ABSTRACT Diadromy, broadly defined here as the regular movement between freshwater and marine habitats at some time during their lives, characterizes numerous fish and invertebrate taxa. Explanations for the evolution of diadromy have focused on ecological requirements of individual taxa, rarely reflecting a comparative, phylogenetic component. When incorporated into phylogenetic studies, center of origin hypotheses have been used to infer dispersal routes. The occurrence and distribution of diadromy throughout fish (aquatic non-tetrapod vertebrate) phylogeny are used here to interpret the evolution of this life history pattern and demonstrate the relationship between life history and ecology in cladistic biogeography. Cladistic biogeography has been mischaracterized as rejecting ecology. On the contrary, cladistic biogeography has been explicit in interpreting ecology or life history patterns within the broader framework of phylogenetic patterns. Today, in inferred ancient life history patterns, such as diadromy, we see remnants of previously broader distribution patterns, such as antitropicality or bipolarity, that spanned both marine and freshwater habitats. Biogeographic regions that span ocean basins and incorporate ocean margins better explain the relationship among diadromy, its evolution, and its distribution than do biogeographic regions centered on continents. Key words: Antitropical distributions, biogeography, diadromy, eels,