Phyllosticta Citricarpa (Mcalpine) Van Der Aa 1973
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©2015 Stephen J. Miller ALL RIGHTS RESERVED
©2015 Stephen J. Miller ALL RIGHTS RESERVED USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS. By STEPHEN J MILLER A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Dr. Ning Zhang And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey October 2015 ABSTRACT OF THE DISSERTATION USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS BY STEPHEN J MILLER Dissertation Director: Dr. Ning Zhang Fungi are the second largest kingdom of eukaryotic life, composed of diverse and ecologically important organisms with pivotal roles and functions, such as decomposers, pathogens, and mutualistic symbionts. Fungal endophyte studies have increased rapidly over the past decade, using traditional culturing or by utilizing Next Generation Sequencing (NGS) to recover fastidious or rare taxa. Despite increasing interest in fungal endophytes, there is still an enormous amount of ecological diversity that remains poorly understood. In this dissertation, I explore the fungal endophyte biodiversity associated within two plant hosts (Cornus L. species) and (Panicum virgatum L.), create a NGS pipeline, facilitating comparison between traditional culturing method and culture- independent metagenomic method. The diversity and functions of fungal endophytes inhabiting leaves of woody plants in the temperate region are not well understood. I explored the fungal biodiversity in native Cornus species of North American and Japan using traditional culturing ii techniques. Samples were collected from regions with similar climate and comparison of fungi was done using two years of collection data. -
Hooked on Tonics Summer’S Most Iconic Stirred Cocktail, the G&T, Is Ready for a Shake-Up
BOUNTY | GOOD SPIRITS Hooked on Tonics Summer’s most iconic stirred cocktail, the G&T, is ready for a shake-up BY CHRIS HUGHES RECIPES BY EMILY NABORS HALL PHOTOGRAPH BY GREG DUPREE THE MEDITERRANEAN G&T THE ROSE G&T THE HERBAL G&T THE ENGLISHMAN’S G&T Stir together 1/2 cup Mediterranean tonic Muddle 6 Tbsp. (3 oz.) gin and 1 fresh THE FLORAL G&T Combine 6 Tbsp. (3 oz.) gin, 2 cucumber (such as Fever-Tree), 6 Tbsp. (3 oz.) gin, strawberry in a small measuring cup, Stir together 1/2 cup agave tonic water THE BITTERSWEET G&T slices, 3 black peppercorns, and 1 whole 1 Tbsp. (1/2 oz.) white port, and 2 dashes and strain into a tall glass. Top with (such as Q Tonic), 6 Tbsp. (3 oz.) gin, Stir together 1/2 cup elderflower tonic star anise pod in a tall glass, and stir of orange bitters in a tall glass. Firmly 1/2 cup grapefruit tonic water (such as 1 Tbsp. (1/2 oz.) Aperol, 1 Tbsp. (1/2 oz.) water, 6 Tbsp. (3 oz.) gin, 2 Tbsp. (1 oz.) Stir together 1/2 cup Indian tonic water vigorously to infuse flavors, about 30 hit 1 mint sprig against the palm of your Fentimans) and 2 Tbsp. (1 oz.) Lillet Pimm’s, and 2 dashes of lime bitters Suze herbal liqueur, and 1/2 Tbsp. lemon (such as Fever-Tree), 6 Tbsp. (3 oz.) gin, seconds. Fill glass with ice, and top with hand to release oils, and swirl in Blanc. -
Product Codes for Fresh Fruits and Vegetables
S/N HS Code Product Code Product Code Description Unit 1 07019010 HVR0POC POTATO, CHIPPING POTATO TNE 2 07019090 HVR0PO POTATO (OTHER THAN SWEET POTATO) TNE 3 07020000 HVF0TT TOMATO TNE 4 07020000 HVF0TTC TOMATO, CHERRY TOMATO TNE 5 07020000 HVF0TTH TOMATO, HONEY TOMATO TNE 6 07031019 HVB0ON ONION, OTHER THAN SPRING ONION TNE 7 07031019 HVB0ONF ONION FLOWERS TNE 8 07031019 HVB0SC SCALLION TNE 9 07031019 HVB0SO SPRING ONION TNE 10 07031029 HVB0SA SHALLOT TNE 11 07032090 HVB0GL GARLIC TNE 12 07032090 HVB0GLF GARLIC FLOWERS TNE 13 07039090 HVB0CV CHIVE / CHIVE STALK (KOO CHYE/ KOO CHYE HUAY) TNE 14 07039090 HVB0CVY CHIVE YELLOW (JIU HUANG) TNE 15 07039090 HVB0LK LEEK/ LEEK STALK (INCL GARLIC SPROUT) TNE 16 07041010 HVC0CF CAULIFLOWER TNE 17 07041020 HVC0BR BROCCOLI TNE 18 07041020 HVC0CA CALABRESE STICCOLI (CALABRESE TENDERGREEN) TNE 19 07042000 HVC0BP BRUSSEL SPROUT TNE 20 07049010 HVC0CB CABBAGE, ROUND (DRUMHEAD) CABBAGE TNE 21 07049020 HVL0LM CHINESE MUSTARD (BRASSICA JUNCEA) TNE 22 07049020 HVL0WA WASABINA (BRASSICA JUNCEA) TNE 23 07049090 HVC0CBC CABBAGE, LONG CABBAGE (WONGBAK) TNE 24 07049090 HVC0CBR CABBAGE, RED CABBAGE TNE 25 07049090 HVC0KH KOHLRABI TNE 26 07049090 HVL0KL KALE (SPECIFIC TYPES TO BE DECLARED IN PRODUCT TNE DESCRIPTION) 27 07049090 HVL0KLET KALETTES TNE 28 07049090 HVC0BRP SPROUTING BROCCOLI TNE 29 07051100 HVL0LTG LETTUCE GARDEN (CHINESE LETTUCE) TNE 30 07051100 HVL0LTH LETTUCE HEAD (ICEBERG LETTUCE/ENGLISH LETTUCE) TNE 31 07051900 HVL0LTA LETTUCE ASPARAGUS (WO JU) TNE 32 07051900 HVL0LTB LETTUCE BUTTERHEAD TNE 33 -
Three Species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) Associated with Woody Plants from Southern China
Mycosphere 8(2): 797–808 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/4 Copyright © Guizhou Academy of Agricultural Sciences Three species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) associated with woody plants from southern China Zhang M1,2, Lin S1,2, He W2, * and Zhang Y1, * 1Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China. 2Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China. Zhang M, Lin S, He W, Zhang Y 2017 – Three species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) associated with woody plants from Southern China. Mycosphere 8(2), 797–808, Doi 10.5943/mycosphere/8/2/4 Abstract Two new species, namely N. sinense and N. illicii, collected from Guizhou and Guangxi provinces in China, are described and illustrated. Phylogenetic analysis based on combined ITS, tef1-α and TUB loci supported their separation from other reported species of Neofusicoccum. Morphologically, the relatively large conidia of N. illicii, which become 1–3-septate and pale yellow when aged, can be distinguishable from all other reported species of Neofusicoccum. Phylogenetically, N. sinense is closely related to N. brasiliense, N. grevilleae and N. kwambonambiense. The smaller conidia of N. sinense, which have lower L/W ratio and become 1– 2-septate when aged, differ from the other three species. Neofusicoccum mangiferae was isolated from the dieback symptoms of mango in Guangdong Province. Key words – Asia – endophytes – Morphology– Taxonomy Introduction Neofusicoccum Crous, Slippers & A.J.L. Phillips was introduced by Crous et al. (2006) for species that are morphologically similar to, but phylogenetically distinct from Botryosphaeria species, which are commonly associated with numerous woody hosts world-wide (Arx 1987, Phillips et al. -
0 Golden Hour
GOLDEN HOUR - In the hour after sunrise or the hour before sunset. In light diffused, the party in apricot hues, refused, to end. 0 CONTENTS The Japanese Garden ............................................................................................................ 2 Gin Selection ......................................................................................................................... 8 Gin Serves .......................................................................................................................... 14 Beers .................................................................................................................................... 15 Champagne and Wine Selection .............................................................................. 16 Champagne ........................................................................................................................ 17 Champagne Rosé ............................................................................................................ 19 Vodka ................................................................................................................................... 21 Teqiula ................................................................................................................................. 22 Mezcal .................................................................................................................................. 23 Pisco .................................................................................................................................... -
Lignocellulolytic Capability of Endophytic Phyllosticta Sp
Open Access Journal of Bacteriology and Mycology Research Article Lignocellulolytic Capability of Endophytic Phyllosticta sp. Wikee S1, Chumnunti P2,3, Kanghae A2, Chukeatirote E2, Lumyong S1 and Faulds CB4* Abstract 1Department of Biology, Faculty of Science, Chiang Mai The Dothideomycetes represent the largest fungal class of Ascomycota. It is University, Thailand an ubiquitous class of fungi whose members span a wide spectrum of lifestyles 2School of Science, Mae Fah Luang University, Chiang and host interactions. The endophytic fungus Phyllosticta is one members of the Rai, Thailand Dothideomycetes, causing disease in economic crops. Phyllosticta was screened 3Institute of Excellence in Fungal Research, School of for the degradation of lignocellulosic biomass of commercial relevance, such as Science, Mae Fah Luang University, Chiang Rai, Thailand rice straw, rice husk, sorghum, wheat straw, miscanthus, lavender flower, and 4Aix Marseille Universite’, INRA, Biodiversité et lavender straw. The highest degrading strains were identified from an initial screen Biotechnologie Fongiques (BBF), Marseille, France and further analyzed for the secretion of lignocellulosic enzymes during growth *Corresponding author: Faulds CB, Aix Marseille on the different biomasses. With Phyllosticta capitalensis (MFLUCC14-0233), Universite’, INRA, Biodiversité et Biotechnologie maximum activity of arabinase (944.18 U/ml culture), cellulase (27.10 U/ml), Fongiques (BBF), Marseille, France xylanase (10.85 U/ml), pectinase (465.47 U/ml), and laccase (35.68 U/ml) activities could be detected in the secretome during growth on lavender flowers Received: February 16, 2017; Accepted: March 22, and lavender straw. Phyllosticta capitalensis is thus an interesting new strain for 2017; Published: March 28, 2017 the production of lignocellulosic enzymes during growth on cheap agro-industrial biomass. -
(Botryosphaeriales) from Russia
Mycosphere 7 (7): 933–941 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/si/1b/2 Copyright © Guizhou Academy of Agricultural Sciences Phaeobotryon negundinis sp. nov. (Botryosphaeriales) from Russia 1, 2 2, 3 4 4 5 Daranagama DA , Thambugala KM , Campino B , Alves A , Bulgakov TS , Phillips AJL6, Liu XZ1, Hyde KD2 1. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 3 1st West Beichen Road, Chaoyang District, Beijing, 100101, People’s Republic of China. 2. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3. Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, People’s Republic of China 4. Departamento de Biologia, CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal. 5. Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don 344090, Rostov region, Russia 6. University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal Daranagama DA, Thambugala KM, Campino B, Alves A, Bulgakov TS, Phillips AJL, Liu XZ, Hyde KD 2016 – Phaeobotryon negundinis sp. nov. (Botryosphaeriales) from Russia. Mycosphere 7(7), 933–941, Doi 10.5943/mycosphere/si/1b/2 Abstract A new species of Phaeobotryon was collected from Acer negundo, Forsythia × intermedia and Ligustrum vulgare from European Russia. Morphological and phylogenetic analyses of combined ITS, β-tubulin and EF1-α sequence data revealed that these collections differ from all other species in the genus. Therefore it is introduced here as Phaeobotryon negundinis sp. -
2011 Florida Citrus Pest Management Guide: Citrus Black Spot1
Archival copy: for current recommendations see http://edis.ifas.ufl.edu or your local extension office. PP279 2011 Florida Citrus Pest Management Guide: Citrus Black Spot1 Megan M. Dewdney, Timothy S. Schubert, Mark R. Estes, and Natalia Peres2 Citrus black spot, a disease caused by the fungus fruit begins to color before harvest. Lesions first Guignardia citricarpa, causes fruit blemishes and occur on the side of the fruit with the greatest light significant yield losses and can affect all commercial exposure. False melanose symptoms appear on green citrus species and cultivars commonly grown in fruit early in the season and do not contain pycnidia. Florida. Lemons are the most susceptible, but sweet The slightly raised lesions are 1–3 mm in diameter oranges—especially mid-late maturing types such as and can vary in color from tan to chocolate brown. 'Valencia'—are also highly susceptible to this Under favorable conditions for infection, false disease. 'Hamlin' sweet oranges and melanose can resemble the mudcake symptoms of tangerine/mandarin types are moderately susceptible. melanose, but are very dark brown rather than rust Grapefruit is thought to be moderately susceptible, red. False melanose symptoms can develop into hard but there is little information available. Management spot as the season progresses. Cracked spot is a must be considered in groves intended for processing symptom that has only been observed in the and fresh market fruit. Americas and is reported to be an interaction between rust mites and G. citricarpa. Cracked spots are large, Fruit symptoms are wide ranging and have many diffuse, smooth lesions that form raised cracks different names. -
Two New Endophytic Species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Article
Mycosphere 8(2): 1273–1288 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/11 Copyright © Guizhou Academy of Agricultural Sciences Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Lin S1, 2, Sun X3, He W1, Zhang Y2 1 Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China 2 Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China 3 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China Lin S, Sun X, He W, Zhang Y 2017 – Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China. Mycosphere 8(2), 1273–1288, Doi 10.5943/mycosphere/8/2/11 Abstract Phyllosticta is an important genus known to cause various leaf spots and fruit diseases worldwide on a large range of hosts. Two new endophytic species of Phyllosticta (P. dendrobii and P. illicii) are described and illustrated from Dendrobium nobile and Illicium verum in China. Phylogenetic analysis based on combined ITS, LSU, tef1-a, ACT and GPDH loci supported their separation from other species of Phyllosticta. Morphologically, P. dendrobii is most comparable with P. aplectri, while the large-sized pycnidia of P. dendrobii differentiate it from P. aplectri. Members of Phyllosticta are first reported from Dendrobium and Illicium. Key words – Asia – Botryosphaeriales – leaf spots – Multilocus phylogeny Introduction Phyllosticta Pers. was introduced by Persoon (1818) and typified by P. convallariae Pers. Many species of Phyllosticta cause leaf and fruit spots on various host plants, such as P. -
Main Diseases in Citrus Abstract
Revista Mexicana Ciencias Agrícolas volume 10 number 7 September 28 - November 11, 2019 Essay Main diseases in citrus Criseida Alhelí Sáenz Pérez1 Eduardo Osorio Hernández1§ Benigno Estrada Drouaillet1 Wilberth Alfredo Poot Poot1 Rafael Delgado Martínez1 2 Raúl Rodríguez Herrera 1Division of Postgraduate Studies and Research-Faculty of Engineering and Sciences-Autonomous University of Tamaulipas. Adolfo López Mateos University Center, Cd. Victoria, Tamaulipas, Mexico. Tel. 834 3181721, ext. 2111. ([email protected]; [email protected]; [email protected]; [email protected]). 2Department of Food Research-Faculty of Chemical Sciences-Autonomous University of Coahuila. Venustiano Carranza Boulevard corner with Ing. José Cárdenas Valdés, Col. República, Saltillo, Coahuila, Mexico. CP. 25280. Tel. 844 4161238. ([email protected]). §Corresponding author: [email protected]. Abstract Citrus fruits are one of the most important crops worldwide, as it is produced in 140 countries. One of the limitations for its production are diseases, they represent considerable damages in the orchards and due to this they diminish the production and cause millionaire losses in the citrus sector. The main diseases are: Phytophthora spp., Mycosphaerella citri, Lasiodiplodia theobromae, Candidatus Liberibacter spp. and citrus sadness virus (VTC). Pathogens can occur at any phenological stage of the crop and throughout the plant, whether in leaves, stems, roots or fruits. These microorganisms cause symptoms of chlorosis, mottling, less development and growth, deficiencies in the absorption of water and nutrients, rot, necrosis and in more extreme cases the death of the plant. For the management of phytopathogens there are different alternatives, the application of agrochemicals based on sulfur and copper (oxychloride and sulfate) are efficient in 70%, in addition, the use of resistant varieties (C. -
Histopathology of Black Spot Symptoms in Sweet Oranges
Eur J Plant Pathol (2012) 133:439–448 DOI 10.1007/s10658-011-9917-9 Histopathology of black spot symptoms in sweet oranges João Paulo Rodrigues Marques & Marcel Bellato Spósito & Alexandre Furtado Silveira Mello & Lilian Amorim & Matheus Mondin & Beatriz Appezzato-da-Glória Accepted: 1 December 2011 /Published online: 23 December 2011 # KNPV 2011 Abstract In Brazil, citrus black spot (CBS) caused by alterations to the epicarp and mesocarp, but in our Guignardia citricarpa is a major disease that has samples only hard spot lesions contained pycnidia. different symptoms on fruit. In this study, fruit of Both of these symptoms were accompanied by protein Citrus sinensis infected by G. citricarpa and showing inclusions. Epidermal and sub-epidermal cells located the symptoms false melanosis, freckle spot and hard in the oil-gland region were obliterated, causing alter- spot were cross-sectioned and analysed anatomically ations in these structures. All symptoms had regions and histochemically by light microscopy. Immuno- that stained strongly for lipids and phenols. histological assays were performed. All symptoms were accompanied by a thickening of the cuticle. False Keywords Citrus sinensis . Guignardia citricarpa . melanosis lesions did not contain pycnidia and Phyllosticta citricarpa . Necrotic symptoms remained restricted to the epicarp or to the first layers of the mesocarp. The stomata in this type of lesion showed phenolic compounds in the guard cells and in the sub-stomatal chamber. In some samples, the guard Introduction cells and their surrounding cells lysed, and a wound meristem began to form underneath them. Freckle spot Citrus black spot (CBS), caused by Guignardia citri- and hard spot lesions had very similar histological carpa Kiely (Phyllosticta citricarpa Van der Aa), is an important disease in Brazil. -
Citrus Disease Guide
E-265 10/10 Citrus Flash Cards S. McBride, R. French, G. Schuster and K. Ong Citrus Disease Guide The Quick ID Guide to Emerging Diseases of Texas Citrus The Quick ID Guide to Emerging Diseases of Texas Citrus enables Master Gardeners, citrus enthusiasts, and homeowners to rapidly identify potentially damaging citrus diseases. The guide consists of a set of flash cards which depict general symptoms of different diseases. Early detection of pathogens makes managing disease issues more successful. This resource is produced in part with grants from the Texas Citrus Producers Board and the USDA-Citrus Health Response Program. Contacts: Texas AgriLife Extension Service AgriLifeExtension.tamu.edu Texas Department of Agriculture www.agr.state.tx.us Texas Plant Disease Diagnostic Lab plantclinic.tamu.edu Prepared by Texas A&M AgriLife Communications AgriLife.org/communications Educational programs of the Texas AgriLife Extension Service are open to all people without regard to race, color, sex, disability, religion, age, or national origin. 1 Citrus Greening Citrus Greening Definition Citrus greening (Huanglongbing) is a bacterial disease that can greatly reduce fruit production and kill trees. This is one of the more serious citrus diseases in the world. It was first identified in Florida in 2005 and has since been reported in Georgia, South Carolina, and Louisiana. Symptoms Leaves: They appear to have blotchy mottling and are yellowing. Leaves also may look narrow and are bunched together. Symptoms may initially appear on a single shoot. Twig and branch: Dieback may occur, resulting in leafless twigs or branches. Fruit: They are smaller and lopsided. Orange-brown discoloration may appear on tissue where the fruit attaches to the tree.