A Modern Account of the Genus Phyllosticta
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Phyllosticta Capitalensis, a Widespread Endophyte of Plants
Fungal Diversity DOI 10.1007/s13225-013-0235-8 Phyllosticta capitalensis, a widespread endophyte of plants Saowanee Wikee & Lorenzo Lombard & Pedro W. Crous & Chiharu Nakashima & Keiichi Motohashi & Ekachai Chukeatirote & Siti A. Alias & Eric H. C. McKenzie & Kevin D. Hyde Received: 21 February 2013 /Accepted: 9 April 2013 # Mushroom Research Foundation 2013 Abstract Phyllosticta capitalensis is an endophyte and weak capitalensis is commonly found associated with lesions of plants, plant pathogen with a worldwide distribution presently known and often incorrectly identified as a species of quarantine impor- from 70 plant families. This study isolated P. capitalensis from tance, which again has implications for trade in agricultural and different host plants in northern Thailand, and determined their forestry production. different life modes. Thirty strains of P. capitalensis were isolated as endophytes from 20 hosts. An additional 30 strains of P. Keywords Guignardia . Leaf spot . Morphology . capitalensis from other hosts and geographic locations were also Molecular phylogeny . Quarantine obtained from established culture collections. Phylogenetic anal- ysis using ITS, ACT and TEF gene data confirmed the identity of all isolates. Pathogenicity tests with five strains of P. capitalensis Introduction originating from different hosts were completed on their respec- tive host plants. In all cases there was no infection of healthy Species in the genus Phyllosticta are mostly plant pathogens leaves, indicating that this endophyte does not cause disease on of a wide range of hosts and are responsible for diseases healthy, unstressed host plants. That P. capitalensis is often including leaf spots and black spots on fruits (Wulandari et isolated as an endophyte has important implications in fungal al. -
©2015 Stephen J. Miller ALL RIGHTS RESERVED
©2015 Stephen J. Miller ALL RIGHTS RESERVED USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS. By STEPHEN J MILLER A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Dr. Ning Zhang And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey October 2015 ABSTRACT OF THE DISSERTATION USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS BY STEPHEN J MILLER Dissertation Director: Dr. Ning Zhang Fungi are the second largest kingdom of eukaryotic life, composed of diverse and ecologically important organisms with pivotal roles and functions, such as decomposers, pathogens, and mutualistic symbionts. Fungal endophyte studies have increased rapidly over the past decade, using traditional culturing or by utilizing Next Generation Sequencing (NGS) to recover fastidious or rare taxa. Despite increasing interest in fungal endophytes, there is still an enormous amount of ecological diversity that remains poorly understood. In this dissertation, I explore the fungal endophyte biodiversity associated within two plant hosts (Cornus L. species) and (Panicum virgatum L.), create a NGS pipeline, facilitating comparison between traditional culturing method and culture- independent metagenomic method. The diversity and functions of fungal endophytes inhabiting leaves of woody plants in the temperate region are not well understood. I explored the fungal biodiversity in native Cornus species of North American and Japan using traditional culturing ii techniques. Samples were collected from regions with similar climate and comparison of fungi was done using two years of collection data. -
(US) 38E.85. a 38E SEE", A
USOO957398OB2 (12) United States Patent (10) Patent No.: US 9,573,980 B2 Thompson et al. (45) Date of Patent: Feb. 21, 2017 (54) FUSION PROTEINS AND METHODS FOR 7.919,678 B2 4/2011 Mironov STIMULATING PLANT GROWTH, 88: R: g: Ei. al. 1 PROTECTING PLANTS FROM PATHOGENS, 3:42: ... g3 is et al. A61K 39.00 AND MMOBILIZING BACILLUS SPORES 2003/0228679 A1 12.2003 Smith et al." ON PLANT ROOTS 2004/OO77090 A1 4/2004 Short 2010/0205690 A1 8/2010 Blä sing et al. (71) Applicant: Spogen Biotech Inc., Columbia, MO 2010/0233.124 Al 9, 2010 Stewart et al. (US) 38E.85. A 38E SEE",teWart et aal. (72) Inventors: Brian Thompson, Columbia, MO (US); 5,3542011/0321197 AllA. '55.12/2011 SE",Schön et al.i. Katie Thompson, Columbia, MO (US) 2012fO259101 A1 10, 2012 Tan et al. 2012fO266327 A1 10, 2012 Sanz Molinero et al. (73) Assignee: Spogen Biotech Inc., Columbia, MO 2014/0259225 A1 9, 2014 Frank et al. US (US) FOREIGN PATENT DOCUMENTS (*) Notice: Subject to any disclaimer, the term of this CA 2146822 A1 10, 1995 patent is extended or adjusted under 35 EP O 792 363 B1 12/2003 U.S.C. 154(b) by 0 days. EP 1590466 B1 9, 2010 EP 2069504 B1 6, 2015 (21) Appl. No.: 14/213,525 WO O2/OO232 A2 1/2002 WO O306684.6 A1 8, 2003 1-1. WO 2005/028654 A1 3/2005 (22) Filed: Mar. 14, 2014 WO 2006/O12366 A2 2/2006 O O WO 2007/078127 A1 7/2007 (65) Prior Publication Data WO 2007/086898 A2 8, 2007 WO 2009037329 A2 3, 2009 US 2014/0274707 A1 Sep. -
Three Species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) Associated with Woody Plants from Southern China
Mycosphere 8(2): 797–808 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/4 Copyright © Guizhou Academy of Agricultural Sciences Three species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) associated with woody plants from southern China Zhang M1,2, Lin S1,2, He W2, * and Zhang Y1, * 1Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China. 2Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China. Zhang M, Lin S, He W, Zhang Y 2017 – Three species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) associated with woody plants from Southern China. Mycosphere 8(2), 797–808, Doi 10.5943/mycosphere/8/2/4 Abstract Two new species, namely N. sinense and N. illicii, collected from Guizhou and Guangxi provinces in China, are described and illustrated. Phylogenetic analysis based on combined ITS, tef1-α and TUB loci supported their separation from other reported species of Neofusicoccum. Morphologically, the relatively large conidia of N. illicii, which become 1–3-septate and pale yellow when aged, can be distinguishable from all other reported species of Neofusicoccum. Phylogenetically, N. sinense is closely related to N. brasiliense, N. grevilleae and N. kwambonambiense. The smaller conidia of N. sinense, which have lower L/W ratio and become 1– 2-septate when aged, differ from the other three species. Neofusicoccum mangiferae was isolated from the dieback symptoms of mango in Guangdong Province. Key words – Asia – endophytes – Morphology– Taxonomy Introduction Neofusicoccum Crous, Slippers & A.J.L. Phillips was introduced by Crous et al. (2006) for species that are morphologically similar to, but phylogenetically distinct from Botryosphaeria species, which are commonly associated with numerous woody hosts world-wide (Arx 1987, Phillips et al. -
(Botryosphaeriales) from Russia
Mycosphere 7 (7): 933–941 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/si/1b/2 Copyright © Guizhou Academy of Agricultural Sciences Phaeobotryon negundinis sp. nov. (Botryosphaeriales) from Russia 1, 2 2, 3 4 4 5 Daranagama DA , Thambugala KM , Campino B , Alves A , Bulgakov TS , Phillips AJL6, Liu XZ1, Hyde KD2 1. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 3 1st West Beichen Road, Chaoyang District, Beijing, 100101, People’s Republic of China. 2. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3. Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, People’s Republic of China 4. Departamento de Biologia, CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal. 5. Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don 344090, Rostov region, Russia 6. University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal Daranagama DA, Thambugala KM, Campino B, Alves A, Bulgakov TS, Phillips AJL, Liu XZ, Hyde KD 2016 – Phaeobotryon negundinis sp. nov. (Botryosphaeriales) from Russia. Mycosphere 7(7), 933–941, Doi 10.5943/mycosphere/si/1b/2 Abstract A new species of Phaeobotryon was collected from Acer negundo, Forsythia × intermedia and Ligustrum vulgare from European Russia. Morphological and phylogenetic analyses of combined ITS, β-tubulin and EF1-α sequence data revealed that these collections differ from all other species in the genus. Therefore it is introduced here as Phaeobotryon negundinis sp. -
Enzymatic Differences Between the Endophyte Guignardia Mangiferae (Botryosphaeriaceae) and the Citrus Pathogen G
Enzymatic differences between the endophyte Guignardia mangiferae (Botryosphaeriaceae) and the citrus pathogen G. citricarpa A.S. Romão1, M.B. Spósito2, F.D. Andreote1, J.L. Azevedo1 and W.L. Araújo3 1Departamento de Genética, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, SP, Brasil 2Fundecitrus, Departamento Científico, Araraquara, SP, Brasil 3Laboratório de Biologia Molecular e Ecologia Microbiana, NIB, Universidade de Mogi das Cruzes, Mogi das Cruzes, SP, Brasil Corresponding author: W.L. Araújo E-mail: [email protected] Genet. Mol. Res. 10 (1): 243-252 (2011) Received July 27, 2010 Accepted November 11, 2010 Published February 15, 2011 DOI 10.4238/vol10-1gmr952 ABSTRACT. The endophyte Guignardia mangiferae is closely related to G. citricarpa, the causal agent of citrus black spot; for many years these species had been confused with each other. The development of molecular analytical methods has allowed differentiation of the pathogen G. citricarpa from the endophyte G. mangiferae, but the physiological traits associated with pathogenicity were not described. We examined genetic and enzymatic characteristics of Guignardia spp strains; G. citricarpa produces significantly greater amounts of amylases, endoglucanases and pectinases, compared to G. mangiferae, suggesting that these enzymes could be key in the development of citrus black spot. Principal component analysis revealed pectinase production as the main enzymatic characteristic that distinguishes these Guignardia species. We quantified the activities of pectin lyase, pectin methylesterase and endopolygalacturonase; G. citricarpa and G. mangiferae were found to have significantly different pectin lyase and endopolygalacturonase activities. The pathogen G. citricarpa is more effective in pectin degradation. We concluded that Genetics and Molecular Research 10 (1): 243-252 (2011) ©FUNPEC-RP www.funpecrp.com.br A.S. -
Two New Endophytic Species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Article
Mycosphere 8(2): 1273–1288 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/11 Copyright © Guizhou Academy of Agricultural Sciences Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Lin S1, 2, Sun X3, He W1, Zhang Y2 1 Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China 2 Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China 3 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China Lin S, Sun X, He W, Zhang Y 2017 – Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China. Mycosphere 8(2), 1273–1288, Doi 10.5943/mycosphere/8/2/11 Abstract Phyllosticta is an important genus known to cause various leaf spots and fruit diseases worldwide on a large range of hosts. Two new endophytic species of Phyllosticta (P. dendrobii and P. illicii) are described and illustrated from Dendrobium nobile and Illicium verum in China. Phylogenetic analysis based on combined ITS, LSU, tef1-a, ACT and GPDH loci supported their separation from other species of Phyllosticta. Morphologically, P. dendrobii is most comparable with P. aplectri, while the large-sized pycnidia of P. dendrobii differentiate it from P. aplectri. Members of Phyllosticta are first reported from Dendrobium and Illicium. Key words – Asia – Botryosphaeriales – leaf spots – Multilocus phylogeny Introduction Phyllosticta Pers. was introduced by Persoon (1818) and typified by P. convallariae Pers. Many species of Phyllosticta cause leaf and fruit spots on various host plants, such as P. -
Causal Agent, Biology and Management of the Leaf and Stem
CAUSAL AGENT, BIOLOGY AND MANAGEMENT OF THE LEAF AND STEM DISEASE OF BOXWOOD {BUXUS SPP.) A Thesis Presented to The Faculty of Graduate Studies of The University of Guelph by FANG SHI In partial fulfillment of requirements for the degree of Master of Science May, 2011 ©Fang Shi, 2011 Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington OttawaONK1A0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-82801-4 Our file Notre reference ISBN: 978-0-494-82801-4 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, preter, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent etre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation. -
Nut Leaf Miner Cameraria Ohridella and the Horse Chestnut Leaf Blotch Guignardia Aesculi
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 April 2021 doi:10.20944/preprints202104.0662.v1 Article Seasonal changes and the interaction between the horse chest- nut leaf miner Cameraria ohridella and the horse chestnut leaf blotch Guignardia aesculi Michal Kopačka 1, Gösta Nachman 2 and Rostislav Zemek 1,* 1 Institute of Entomology, Biology Centre CAS, Branišovská 1160/31, 370 05 České Budějovice, Czech Repub- lic; [email protected] 2 Department of Biology, Section of Ecology and Evolution, University of Copenhagen, 2100 Copenhagen Ø, Denmark; [email protected] * Correspondence: [email protected] Abstract: The horse chestnut leaf miner Cameraria ohridella (Lepidoptera: Gracillariidae) is an inva- sive pest of horse chestnut and has spread through Europe since 1985. The horse chestnut leaf blotch Guignardia aesculi (Botryosphaeriales: Botryosphaeriaceae) is a fungal disease that also se- riously damages horse chestnut trees in Europe. The interaction between the leaf miner and the fungus has not yet been sufficiently described. Therefore, the aim of the present study was to assess leaf damage inflicted to horse chestnut by both C. ohridella and G. aesculi during the vegetation season and to model their interaction. The damage to leaf area was measured monthly from May to September 2013 in České Budějovice, the Czech Republic. A simple phenomenological model de- scribing the expected dynamics of the two species was developed. The study revealed a significant effect of sampling site and sampling period on the damage caused by both the pest and the fungus. The mathematical model indicates that infestation by C. ohridella is more affected by G. -
Phylogenetic Lineages in the Botryosphaeriaceae
STUDIES IN MYCOLOGY 55: 235–253. 2006. Phylogenetic lineages in the Botryosphaeriaceae Pedro W. Crous1*, Bernard Slippers2, Michael J. Wingfield2, John Rheeder3, Walter F.O. Marasas3, Alan J.L. Philips4, Artur Alves5, Treena Burgess6, Paul Barber6 and Johannes Z. Groenewald1 1Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; 3PROMEC Unit, Medical Research Council, P.O. Box 19070, 7505 Tygerberg, South Africa; 4Centro de Recursos Microbiológicos, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal; 5Centro de Biologia Celular, Departamento de Biologia, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; 6School of Biological Sciences & Biotechnology, Murdoch University, Murdoch 6150, WA, Australia *Correspondence: Pedro W. Crous, [email protected] Abstract: Botryosphaeria is a species-rich genus with a cosmopolitan distribution, commonly associated with dieback and cankers of woody plants. As many as 18 anamorph genera have been associated with Botryosphaeria, most of which have been reduced to synonymy under Diplodia (conidia mostly ovoid, pigmented, thick-walled), or Fusicoccum (conidia mostly fusoid, hyaline, thin-walled). However, there are numerous conidial anamorphs having morphological characteristics intermediate between Diplodia and Fusicoccum, and there are several records of species outside the Botryosphaeriaceae that have anamorphs apparently typical of Botryosphaeria s.str. Recent studies have also linked Botryosphaeria to species with pigmented, septate ascospores, and Dothiorella anamorphs, or Fusicoccum anamorphs with Dichomera synanamorphs. The aim of this study was to employ DNA sequence data of the 28S rDNA to resolve apparent lineages within the Botryosphaeriaceae. -
An Investigation of Alternative Antifungals Against Phyllosticta Citricarpa Kiely and Guignardia Mangiferae
An Investigation of Alternative Antifungals against Phyllosticta citricarpa Kiely and Guignardia mangiferae Bheki Thapelo Magunga Dissertation submitted in fulfillment of the requirement for the degree MASTER OF HEALTH SCIENCE: ENVIRONMENTAL HEALTH In the Department Life Science At the Central University of Technology, Free State Supervisor: Dr N.J. Malebo (Ph.D. Microbiology) Co-supervisor: Dr M.D. Ncango (PhD Microbiology) Co-supervisor: Ms SJ Nkhebenyane (M.Tech Environmental Health) Bloemfontein, South Africa, 2016 © Central University of Technology, Free State DECLARATION OF INDEPENDENT WORK I, Bheki Thapelo Magunga, do hereby declare that this research project submitted to the Central University of Technology, Free State for the degree MASTER OF HEALTH SCIENCE: ENVIRONMENTAL HEALTH is my own work and has not been submitted before to any institution by myself or any other person in fulfilment of the requirements for the attainment of any qualification. Signature of student Date ……………………………. ……………… i © Central University of Technology, Free State ACKNOWLEDGEMENTS I would like to extend my sincere appreciation and gratitude to: God, for his wisdom, understanding, peace and the strength you gave me. With you the word impossible does not exist. Dr N.J. Malebo for her patience, understanding, constructive criticism, guidance and support during this study. Dr Desmond Ncango for constructive criticism, providing the fungus, support and advice. My fellow colleagues and close circle of friends from Department of Life Science (Edmore Kativu for assistance with GC-MS analysis, Gaofetoge Gobodiwang Setlhare for your advice and encouragement and the laughter, Lehlononolo Qhanya for assistance, support and the crazy moments in between. My family and friends for always supporting encouraging and praying for me throughout this study.