Plectomycetes, Benny & Kimbrough (1980) Accepted 6 Orders, The
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Expanding the Knowledge on the Skillful Yeast Cyberlindnera Jadinii
Journal of Fungi Review Expanding the Knowledge on the Skillful Yeast Cyberlindnera jadinii Maria Sousa-Silva 1,2 , Daniel Vieira 1,2, Pedro Soares 1,2, Margarida Casal 1,2 and Isabel Soares-Silva 1,2,* 1 Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; [email protected] (M.S.-S.); [email protected] (D.V.); [email protected] (P.S.); [email protected] (M.C.) 2 Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, 4710-057 Braga, Portugal * Correspondence: [email protected]; Tel.: +351-253601519 Abstract: Cyberlindnera jadinii is widely used as a source of single-cell protein and is known for its ability to synthesize a great variety of valuable compounds for the food and pharmaceutical industries. Its capacity to produce compounds such as food additives, supplements, and organic acids, among other fine chemicals, has turned it into an attractive microorganism in the biotechnology field. In this review, we performed a robust phylogenetic analysis using the core proteome of C. jadinii and other fungal species, from Asco- to Basidiomycota, to elucidate the evolutionary roots of this species. In addition, we report the evolution of this species nomenclature over-time and the existence of a teleomorph (C. jadinii) and anamorph state (Candida utilis) and summarize the current nomenclature of most common strains. Finally, we highlight relevant traits of its physiology, the solute membrane transporters so far characterized, as well as the molecular tools currently available for its genomic manipulation. -
Distribution of Methionine Sulfoxide Reductases in Fungi and Conservation of the Free- 2 Methionine-R-Sulfoxide Reductase in Multicellular Eukaryotes
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Distribution of methionine sulfoxide reductases in fungi and conservation of the free- 2 methionine-R-sulfoxide reductase in multicellular eukaryotes 3 4 Hayat Hage1, Marie-Noëlle Rosso1, Lionel Tarrago1,* 5 6 From: 1Biodiversité et Biotechnologie Fongiques, UMR1163, INRAE, Aix Marseille Université, 7 Marseille, France. 8 *Correspondence: Lionel Tarrago ([email protected]) 9 10 Running title: Methionine sulfoxide reductases in fungi 11 12 Keywords: fungi, genome, horizontal gene transfer, methionine sulfoxide, methionine sulfoxide 13 reductase, protein oxidation, thiol oxidoreductase. 14 15 Highlights: 16 • Free and protein-bound methionine can be oxidized into methionine sulfoxide (MetO). 17 • Methionine sulfoxide reductases (Msr) reduce MetO in most organisms. 18 • Sequence characterization and phylogenomics revealed strong conservation of Msr in fungi. 19 • fRMsr is widely conserved in unicellular and multicellular fungi. 20 • Some msr genes were acquired from bacteria via horizontal gene transfers. 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
GFS Fungal Remains from Late Neogene Deposits at the Gray
GFS Mycosphere 9(5): 1014–1024 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/5/5 Fungal remains from late Neogene deposits at the Gray Fossil Site, Tennessee, USA Worobiec G1, Worobiec E1 and Liu YC2 1 W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland 2 Department of Biological Sciences and Office of Research & Sponsored Projects, California State University, Fullerton, CA 92831, U.S.A. Worobiec G, Worobiec E, Liu YC 2018 – Fungal remains from late Neogene deposits at the Gray Fossil Site, Tennessee, USA. Mycosphere 9(5), 1014–1024, Doi 10.5943/mycosphere/9/5/5 Abstract Interesting fungal remains were encountered during palynological investigation of the Neogene deposits at the Gray Fossil Site, Washington County, Tennessee, USA. Both Cephalothecoidomyces neogenicus and Trichothyrites cf. padappakarensis are new for the Neogene of North America, while remains of cephalothecoid fungus Cephalothecoidomyces neogenicus G. Worobiec, Neumann & E. Worobiec, fragments of mantle tissue of mycorrhizal Cenococcum and sporocarp of epiphyllous Trichothyrites cf. padappakarensis (Jain & Gupta) Kalgutkar & Jansonius were reported. Remains of mantle tissue of Cenococcum for the fossil state are reported for the first time. The presence of Cephalothecoidomyces, Trichothyrites, and other fungal remains previously reported from the Gray Fossil Site suggest warm and humid palaeoclimatic conditions in the southeast USA during the late Neogene, which is in accordance with data previously obtained from other palaeontological analyses at the Gray Fossil Site. Key words – Cephalothecoid fungus – Epiphyllous fungus – Miocene/Pliocene – Mycorrhizal fungus – North America – palaeoecology – taxonomy Introduction Fungal organic remains, usually fungal spores and dispersed sporocarps, are frequently found in a routine palynological investigation (Elsik 1996). -
Phylogeny of the Genus Arachnomyces and Its Anamorphs and the Establishment of Arachnomycetales, a New Eurotiomycete Order in the Ascomycota
STUDIES IN MYCOLOGY 47: 131-139, 2002 Phylogeny of the genus Arachnomyces and its anamorphs and the establishment of Arachnomycetales, a new eurotiomycete order in the Ascomycota 1, 2 1* 3 2 C. F. C. Gibas , L. Sigler , R. C. Summerbell and R. S. Currah 1University of Alberta Microfungus Collection and Herbarium, Edmonton, Alberta, Canada; 2Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada; 3Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands Abstract: Arachnomyces is a genus of cleistothecial ascomycetes that has morphological similarities to the Onygenaceae and the Gymnoascaceae but is not accommodated well in either taxon. The phylogeny of the genus and its related anamorphs was studied using nuclear SSU rDNA gene sequences. Partial sequences were determined from ex-type cultures representing A. minimus, A. nodosetosus (anamorph Onychocola canadensis), A. kanei (anamorph O. kanei) and A. gracilis (anamorph Malbranchea sp.) and aligned together with published sequences of onygenalean and other ascomycetes. Phylogenetic analysis based on maximum parsimony showed that Arachnomyces is monophyletic, that it includes the hyphomycete Malbranchea sclerotica, and it forms a distinct lineage within the Eurotiomycetes. Based on molecular and morphological data, we propose the new order Arachnomycetales and a new family Arachnomycetaceae. All known anamorphs in this lineage are arthroconidial and have been placed either in Onychocola (A. nodosetosus, A. kanei) or in Malbranchea (A. gracilis). Onychocola is considered appropriate for disposition of the arthroconidial states of Arachnomyces and thus Malbranchea sclerotica and the unnamed anamorph of A. gracilis are redisposed as Onychocola sclerotica comb. nov. and O. gracilis sp. nov. Keywords: Eurotiomycetes, Arachnomycetales, Arachnomycetaceae, Arachnomyces, Onychocola, Malbranchea sclerotica, SSU rDNA, Ascomycota, phylogeny Introduction described from herbivore dung maintained in damp chambers (Singh & Mukerji, 1978; Mukerji, pers. -
Aspergillus Penicillioides Speg. Implicated in Keratomycosis
Polish Journal of Microbiology ORIGINAL PAPER 2018, Vol. 67, No 4, 407–416 https://doi.org/10.21307/pjm-2018-049 Aspergillus penicillioides Speg. Implicated in Keratomycosis EULALIA MACHOWICZ-MATEJKO1, AGNIESZKA FURMAŃCZYK2 and EWA DOROTA ZALEWSKA2* 1 Department of Diagnostics and Microsurgery of Glaucoma, Medical University of Lublin, Lublin, Poland 2 Department of Plant Pathology and Mycology, University of Life Sciences in Lublin, Lublin, Poland Submitted 9 November 2017, revised 6 March 2018, accepted 28 June 2018 Abstract The aim of the study was mycological examination of ulcerated corneal tissues from an ophthalmic patient. Tissue fragments were analyzed on potato-glucose agar (PDA) and maltose (MA) (Difco) media using standard laboratory techniques. Cultures were identified using classi- cal and molecular methods. Macro- and microscopic colony morphology was characteristic of fungi from the genus Aspergillus (restricted growth series), most probably Aspergillus penicillioides Speg. Molecular analysis of the following rDNA regions: ITS1, ITS2, 5.8S, 28S rDNA, LSU and β-tubulin were carried out for the isolates studied. A high level of similarity was found between sequences from certain rDNA regions, i.e. ITS1-5.8S-ITS2 and LSU, what confirmed the classification of the isolates to the species A. penicillioides. The classification of our isolates to A. penicillioides species was confirmed also by the phylogenetic analysis. K e y w o r d s: Aspergillus penicillioides, morphology, genetic characteristic, cornea Introduction fibrosis has already been reported (Bossche et al. 1988; Sandhu et al. 1995; Hamilos 2010; Gupta et al. 2015; Fungi from the genus Aspergillus are anamorphic Walicka-Szyszko and Sands 2015). -
Fungal Planet Description Sheets: 716–784 By: P.W
Fungal Planet description sheets: 716–784 By: P.W. Crous, M.J. Wingfield, T.I. Burgess, G.E.St.J. Hardy, J. Gené, J. Guarro, I.G. Baseia, D. García, L.F.P. Gusmão, C.M. Souza-Motta, R. Thangavel, S. Adamčík, A. Barili, C.W. Barnes, J.D.P. Bezerra, J.J. Bordallo, J.F. Cano-Lira, R.J.V. de Oliveira, E. Ercole, V. Hubka, I. Iturrieta-González, A. Kubátová, M.P. Martín, P.-A. Moreau, A. Morte, M.E. Ordoñez, A. Rodríguez, A.M. Stchigel, A. Vizzini, J. Abdollahzadeh, V.P. Abreu, K. Adamčíková, G.M.R. Albuquerque, A.V. Alexandrova, E. Álvarez Duarte, C. Armstrong-Cho, S. Banniza, R.N. Barbosa, J.-M. Bellanger, J.L. Bezerra, T.S. Cabral, M. Caboň, E. Caicedo, T. Cantillo, A.J. Carnegie, L.T. Carmo, R.F. Castañeda-Ruiz, C.R. Clement, A. Čmoková, L.B. Conceição, R.H.S.F. Cruz, U. Damm, B.D.B. da Silva, G.A. da Silva, R.M.F. da Silva, A.L.C.M. de A. Santiago, L.F. de Oliveira, C.A.F. de Souza, F. Déniel, B. Dima, G. Dong, J. Edwards, C.R. Félix, J. Fournier, T.B. Gibertoni, K. Hosaka, T. Iturriaga, M. Jadan, J.-L. Jany, Ž. Jurjević, M. Kolařík, I. Kušan, M.F. Landell, T.R. Leite Cordeiro, D.X. Lima, M. Loizides, S. Luo, A.R. Machado, H. Madrid, O.M.C. Magalhães, P. Marinho, N. Matočec, A. Mešić, A.N. Miller, O.V. Morozova, R.P. Neves, K. Nonaka, A. Nováková, N.H. -
M.Sc. Dissertation
2 ACKNOWLEDGEMENTS I wish to thank the following: God , for giving me the strength and guidance to start each day with new hope. Prof. J. L. F. Kock , for his guidance, understanding and passion for research. Prof. P. W. J. van Wyk and Miss B. Janecke for their patience and assistance with the SEM, TEM and CLSM. Dr. C. H. Pohl , for her encouragement and assistance. Mrs. A. van Wyk , for providing the yeast cultures used during this study and also for her encouragement and support. Mr. S. F. Collett , for assisting with the graphical design of this dissertation. My colleagues in Lab 28 , for always being supportive and helpful. My mother, Mrs. M. M. Swart and grandmother, Mrs. M. M. Coetzer , for their patience, love and encouragement. My family for their encouragement and for believing in me. Mr. P. S. Delport , for his love, understanding and patience. 3 CONTENTS Page Title Page 1 Acknowledgements 3 Contents 4 CHAPTER 1 Literature Review 1.1 Motivation 9 1.2 Automictic yeasts 10 1.2.1 Definition of a yeast 10 1.2.2 Automixis 11 1.3 Oxylipins 19 1.3.1 Background 19 1.3.2 3-OH oxylipins 19 1.3.2.1 Chemical structure and production 19 1.3.2.2 Distribution 20 1.3.2.3 Function 23 1.3.2.4 ASA inhibition 23 1.4 Purpose of research 24 1.5 References 26 4 CHAPTER 2 Oxylipin accumulation and acetylsalicylic acid sensitivity in fermentative and non-fermentative yeasts 2.1 Abstract 38 2.2 Introduction 40 2.3 Materials and Methods 41 2.3.1 Strains used and cultivation 41 2.3.2 Ultrastructure 42 2.3.2.1 Scanning electron microscopy (SEM) -
Food Microbiology Fungal Spores: Highly Variable and Stress-Resistant Vehicles for Distribution and Spoilage
Food Microbiology 81 (2019) 2–11 Contents lists available at ScienceDirect Food Microbiology journal homepage: www.elsevier.com/locate/fm Fungal spores: Highly variable and stress-resistant vehicles for distribution and spoilage T Jan Dijksterhuis Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584, Utrecht, the Netherlands ARTICLE INFO ABSTRACT Keywords: This review highlights the variability of fungal spores with respect to cell type, mode of formation and stress Food spoilage resistance. The function of spores is to disperse fungi to new areas and to get them through difficult periods. This Spores also makes them important vehicles for food contamination. Formation of spores is a complex process that is Conidia regulated by the cooperation of different transcription factors. The discussion of the biology of spore formation, Ascospores with the genus Aspergillus as an example, points to possible novel ways to eradicate fungal spore production in Nomenclature food. Fungi can produce different types of spores, sexual and asexually, within the same colony. The absence or Development Stress resistance presence of sexual spore formation has led to a dual nomenclature for fungi. Molecular techniques have led to a Heat-resistant fungi revision of this nomenclature. A number of fungal species form sexual spores, which are exceptionally stress- resistant and survive pasteurization and other treatments. A meta-analysis is provided of numerous D-values of heat-resistant ascospores generated during the years. The relevance of fungal spores for food microbiology has been discussed. 1. The fungal kingdom molecules, often called “secondary” metabolites, but with many pri- mary functions including communication or antagonism. However, Representatives of the fungal kingdom, although less overtly visible fungi can also be superb collaborators as is illustrated by their ability to in nature than plants and animals, are nevertheless present in all ha- form close associations with members of other kingdoms. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
A New Species of <I>Emericella</I> from Tibet, China
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/125.131 Volume 125, pp. 131–138 July–September 2013 A new species of Emericella from Tibet, China Li-chun Zhang1, 2 a*, Juan Chen2 , Wen-han Lin1 & Shun-xing Guo2 b* 1 The State Key Laboratory of Natural and Biomimetic Drugs, Peking University, Beijing 100193, People’s Republic of China. 2 Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100193, People’s Republic of China * Correspondence to: a [email protected] & b [email protected]* Abstract — Emericella miraensis sp. nov. is described and illustrated. It was isolated from the alpine plant Polygonum macrophyllum var. stenophyllum from Tibet, China, and is characterized by ascospores with star-shaped equatorial crests. The new species is distinguished from other Emericella species with stellate ascospores (e.g., E. variecolor, E. astellata) by its violet ascospores and verrucose spore ornamentation. ITS and β-tubulin sequence analyses also support E. miraensis as a new species. Key words —Aspergillus, endophytic fungi, phylogeny, taxonomy Introduction Berkeley (1857) established Emericella, a teleomorph genus associated with Aspergillus, for the type species E. variecolor Berk. & Broome (Geiser 2009, Peterson 2012). To date, 36 species have been described and recorded worldwide (Kirk et al. 2008). Emericella species are usually isolated from soil (Samson & Mouchacca 1974, Horie et al. 1989, 1990, 1996, 1998, 2000; Stchigel & Guarro 1997) but sometimes also from stored foods, herbal drugs, and grains or occasionally from hypersaline water (Zalar et al. 2008) or living plants (Berbee 2001, Thongkantha et al. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus.