Transcriptomics of Different Tissues of Blueberry and Diversity Analysis Of
Total Page：16
File Type：pdf, Size：1020Kb
Chen et al. BMC Plant Biol (2021) 21:389 https://doi.org/10.1186/s12870-021-03125-z RESEARCH Open Access Transcriptomics of diferent tissues of blueberry and diversity analysis of rhizosphere fungi under cadmium stress Shaopeng Chen1*, QianQian Zhuang1, XiaoLei Chu2, ZhiXin Ju1, Tao Dong1 and Yuan Ma1 Abstract Blueberry (Vaccinium ssp.) is a perennial shrub belonging to the family Ericaceae, which is highly tolerant of acid soils and heavy metal pollution. In the present study, blueberry was subjected to cadmium (Cd) stress in simulated pot culture. The transcriptomics and rhizosphere fungal diversity of blueberry were analyzed, and the iron (Fe), manga- nese (Mn), copper (Cu), zinc (Zn) and cadmium (Cd) content of blueberry tissues, soil and DGT was determined. A correlation analysis was also performed. A total of 84 374 annotated genes were identifed in the root, stem, leaf and fruit tissue of blueberry, of which 3370 were DEGs, and in stem tissue, of which 2521 were DEGs. The annotation data showed that these DEGs were mainly concentrated in a series of metabolic pathways related to signal transduction, defense and the plant–pathogen response. Blueberry transferred excess Cd from the root to the stem for storage, and the highest levels of Cd were found in stem tissue, consistent with the results of transcriptome analysis, while the lowest Cd concentration occurred in the fruit, Cd also inhibited the absorption of other metal elements by blueberry. A series of genes related to Cd regulation were screened by analyzing the correlation between heavy metal content and transcriptome results. The roots of blueberry rely on mycorrhiza to absorb nutrients from the soil. The presence of Cd has a signifcant efect on the microbial community composition of the blueberry rhizosphere. The fungal family Coniochaetaceae, which is extremely extremelytolerant, has gradually become the dominant population. The results of this study increase our understanding of the plant regulation mechanism for heavy metals, and suggest potential methods of soil remediation using blueberry. Keywords: Blueberry, Cadmium, Transcriptomics, Microbial diversity, Heavy metal absorption Introduction caused major environmental problems [3]. Moreover, Cadmium (Cd) is a toxic heavy metal that accumulates in Cd and its compounds are readily soluble in water under soil as a result of air and water circulation, and acts on acidic conditions. However, the dissolution rate of Cd in the human body through the food chain. Te accumula- neutral to alkaline soil is very low [4]. Terefore, how to tion of Cd in the human body causes severe toxic reac- efciently remove Cd in acid-contaminated soil is a very tions [1]. Te pollution area and toxic efects of Cd have important topic [5, 6]. Te use of hyperaccumulators for a serious impact worldwide [2]. At present, Cd pollution remediation of contaminated soil is highly efcient and of agricultural soils in China is very extensive, and has protects the environment, and has therefore attracted increasing attention. Plant species such as Rorippa globu- losa, Solanum nigrum, Sedum alfredii, Viola baoshanen- *Correspondence: [email protected] sis and Pteris vittata can enrich Cd and some other heavy 1 College of Agriculture, Jilin Agricultural Science and Technology metals in soil [7]. However, the use of plants for soil University, Jilin 132101, PR China Full list of author information is available at the end of the article © The Author(s) 2021. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Chen et al. BMC Plant Biol (2021) 21:389 Page 2 of 19 remediation is also associated with slow growth rates, pathways, such as the brassinosteroid and ethylene sig- resulting in economic losses. nalling pathways, in this species [21]. In response to Cd Blueberry (Vaccinium ssp.) is a perennial shrub belong- stress, ABC transporters, Zrt/IRT and transcription ing to the family Ericaceae that thrives on acid soil. It factors are signifcantly induced in the roots of Festuca was introduced and domesticated successfully in the arundinacea, mainly refecting activity of the pathways early twentieth century. However, it is only within the related to glutathione metabolism, phenylpropanoid last 20 years that, as the unique favour and high nutri- biosynthesis and nitrogen metabolism [22]. Compared tional value of this crop have led to growing demand for with the high-Cd-accumulating type, there is a delay in its production, its cultivation area has expanded rap- transcriptional changes in response to Cd in the low-Cd- idly worldwide, particularly in Europe, North America, accumulating type. Cell wall biosynthesis and glutathione South America and Asia, including China [8]. It is well metabolism are involved in the Cd defense response of documented in the literature that blueberry fruit is rich the high-Cd-accumulating type. Moreover, the expres- in anthocyanins, and contains among the highest anti- sion of Cd transport genes has been found to difer oxidant levels of any fruit [9]. Moderate intake can between two types of Chinese cabbage [23]. In Kandelia signifcantly reduce the risk of cardiovascular and cere- obovata under Cd or Zn stress, three phenolic metabo- brovascular disease and type 2 diabetes mellitus, and pro- lism pathways are involved in the heavy metal tolerance vides some degree of neuroprotection [10]. However, a mechanism, and the heavy metal content of the leaves is number of studies have highlighted a new potential appli- positively correlated with their total phenol content [24]. cation for this plant. Blueberry is a dominant tree spe- Heavy metals present in the soil not only afect the cies in acid soils polluted with heavy metal compounds plants growing in it, but also have a signifcant impact [11, 12], to the extent that it is often used as an indicator on the microorganisms in the soil. In previous studies species for monitoring local pollution with heavy met- it has been reported that soil microorganisms are much als [13, 14]. Kandziora-Ciupa et al. studied the response more sensitive to heavy metal stress than are either soil of V. myrtillus (bilberry) to heavy metals in three con- animals or plants growing in the same soil [25]. Excessive taminated sites in Finland. Teir results showed that V. amounts of heavy metals in the soil also lead to changes myrtillus could adapt to the polluted soil [15]. A large in the biomass and diversity of soil microorganisms [26]. number of plants of V. angustifolium and V. myrtilloides A combination of plant root exudates and the microor- grow around the ore smelters in Sudbury, Canada. Both ganisms associated with the roots can enhance the plant’s species can tolerate heavy-metal-contaminated soil and tolerance of the toxic efects of heavy metals [25]. It has grow well on it. It is of paramount importance that the been found that soil microorganisms can reduce the levels of heavy metal pollutants (Cu and Ni) in the fruits mobility and bioavailability of metals through the pro- of these species do not exceed the internationally agreed cesses of biosorption and precipitation [27]. Te degree safe values, so that they are safe for human consump- of severity of heavy metal pollution also afects the com- tion [16]. In the Majiang blueberry production area in position of the microbial community. Under conditions China, Li et al. measured the heavy metal content of soil of severe pollution, the dominant microbial population in and fruit. Teir results showed that although the heavy rice roots is positively correlated with Cd concentration metal levels in soil exceeded the maximum safe value, the [28]. Blueberry has a small fbrous undeveloped root sys- corresponding levels in fruit did not. Chen et al. studied tem, which forms mycorrhizal associations with mycor- blueberry plants that had been cultivated in Cd-contami- rhizal fungi that also interact with symbiotic bacteria and nated soil, and found that the Cd content of the fruit was provide the necessary nutrients for the plant [29]. Te not signifcantly afected by soil pollution [17], which mycorrhizae of Blueberry can help the plant to resist the suggests a potential new role for this plant as a remedia- adverse efects of environmental factors such as drought tion species in acid soil contaminated with heavy metals. and low temperature [30, 31]. Te absorption and detoxifcation of heavy metals in To date there have been only a few reports on the phys- plants are complex regulatory processes. Unnecessary iological efects of heavy metals on blueberry cultivation. heavy metals seriously impair morphological and struc- Blueberry can reduce the toxic efects of heavy metals by tural development, inhibit physiological processes, cause regulating its own antioxidant stress response. Te toxic oxidative stress reactions, and ultimately result in death efects are related to the type of heavy metal and the of the plant [18–20].