Exploring a Plant-Soil-Mycorrhiza Feedback with Rhododendron
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Russulas of Southern Vancouver Island Coastal Forests
Russulas of Southern Vancouver Island Coastal Forests Volume 1 by Christine Roberts B.Sc. University of Lancaster, 1991 M.S. Oregon State University, 1994 A Dissertation Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in the Department of Biology © Christine Roberts 2007 University of Victoria All rights reserved. This dissertation may not be reproduced in whole or in part, by photocopying or other means, without the permission of the author. Library and Bibliotheque et 1*1 Archives Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A0N4 Ottawa ON K1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-47323-8 Our file Notre reference ISBN: 978-0-494-47323-8 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library permettant a la Bibliotheque et Archives and Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par Plntemet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans loan, distribute and sell theses le monde, a des fins commerciales ou autres, worldwide, for commercial or non sur support microforme, papier, electronique commercial purposes, in microform, et/ou autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in et des droits moraux qui protege cette these. -
Transcriptomics of Different Tissues of Blueberry and Diversity Analysis Of
Chen et al. BMC Plant Biol (2021) 21:389 https://doi.org/10.1186/s12870-021-03125-z RESEARCH Open Access Transcriptomics of diferent tissues of blueberry and diversity analysis of rhizosphere fungi under cadmium stress Shaopeng Chen1*, QianQian Zhuang1, XiaoLei Chu2, ZhiXin Ju1, Tao Dong1 and Yuan Ma1 Abstract Blueberry (Vaccinium ssp.) is a perennial shrub belonging to the family Ericaceae, which is highly tolerant of acid soils and heavy metal pollution. In the present study, blueberry was subjected to cadmium (Cd) stress in simulated pot culture. The transcriptomics and rhizosphere fungal diversity of blueberry were analyzed, and the iron (Fe), manga- nese (Mn), copper (Cu), zinc (Zn) and cadmium (Cd) content of blueberry tissues, soil and DGT was determined. A correlation analysis was also performed. A total of 84 374 annotated genes were identifed in the root, stem, leaf and fruit tissue of blueberry, of which 3370 were DEGs, and in stem tissue, of which 2521 were DEGs. The annotation data showed that these DEGs were mainly concentrated in a series of metabolic pathways related to signal transduction, defense and the plant–pathogen response. Blueberry transferred excess Cd from the root to the stem for storage, and the highest levels of Cd were found in stem tissue, consistent with the results of transcriptome analysis, while the lowest Cd concentration occurred in the fruit, Cd also inhibited the absorption of other metal elements by blueberry. A series of genes related to Cd regulation were screened by analyzing the correlation between heavy metal content and transcriptome results. The roots of blueberry rely on mycorrhiza to absorb nutrients from the soil. -
The Effect of Decayed Or Downed Wood on the Structure and Function of Ectomycorrhizal Fungal Communities at a High Elevation Forest
The effect of decayed or downed wood on the structure and function of ectomycorrhizal fungal communities at a high elevation forest by Jennifer Karen Marie Walker B.Sc., The University of Northern British Columbia, 2003 M.Sc., The University of Northern British Columbia, 2006 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in The College of Graduate Studies (Biology) THE UNIVERSITY OF BRITISH COLUMBIA (Okanagan) March 2012 !Jennifer Karen Marie Walker, 2012 Abstract Shifts in ectomycorrhizal (ECM) fungal community composition occur after clearcut logging, resulting in the loss of forest-associated fungi and potential ecosystem function. Coarse woody debris (CWD) includes downed wood generated during logging; decayed downed wood is a remnant of the original forest, and important habitat for ECM fungi. Over the medium term, while logs remain hard, it is not known if they influence ECM fungal habitat. I tested for effects of downed wood on ECM fungal communities by examining ECM roots and fungal hyphae of 10-yr-old saplings in CWD retention and removal plots in a subalpine ecosystem. I then tested whether downed and decayed wood provided ECM fungal habitat by planting nonmycorrhizal spruce seedlings in decayed wood, downed wood, and mineral soil microsites in the clearcuts and adjacent forest plots, and harvested them 1 and 2 years later. I tested for differences in the community structure of ECM root tips (Sanger sequencing) among all plots and microsites, and of ECM fungal hyphae (pyrosequencing) in forest microsites. I assayed the activities of eight extracellular enzymes in order to compare community function related to nutrient acquisition. -
An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Monika KOZŁOWSKA, Wiesław MUŁENKO Marcin ANUSIEWICZ, Magda MAMCZARZ
An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Fungal Biota of the An Annotated Catalogue of the Monika KOZŁOWSKA, Wiesław MUŁENKO Marcin ANUSIEWICZ, Magda MAMCZARZ An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Richness, Diversity and Distribution MARIA CURIE-SkłODOWSKA UNIVERSITY PRESS POLISH BOTANICAL SOCIETY Grzyby_okladka.indd 6 11.02.2019 14:52:24 An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Richness, Diversity and Distribution Monika KOZŁOWSKA, Wiesław MUŁENKO Marcin ANUSIEWICZ, Magda MAMCZARZ An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Richness, Diversity and Distribution MARIA CURIE-SkłODOWSKA UNIVERSITY PRESS POLISH BOTANICAL SOCIETY LUBLIN 2019 REVIEWER Dr hab. Małgorzata Ruszkiewicz-Michalska COVER DESIN, TYPESETTING Studio Format © Te Authors, 2019 © Maria Curie-Skłodowska University Press, Lublin 2019 ISBN 978-83-227-9164-6 ISBN 978-83-950171-8-6 ISBN 978-83-950171-9-3 (online) PUBLISHER Polish Botanical Society Al. Ujazdowskie 4, 00-478 Warsaw, Poland pbsociety.org.pl Maria Curie-Skłodowska University Press 20-031 Lublin, ul. Idziego Radziszewskiego 11 tel. (81) 537 53 04 wydawnictwo.umcs.eu [email protected] Sales Department tel. / fax (81) 537 53 02 Internet bookshop: wydawnictwo.umcs.eu [email protected] PRINTED IN POLAND, by „Elpil”, ul. Artyleryjska 11, 08-110 Siedlce AUTHOR’S AFFILIATION Department of Botany and Mycology, Maria Curie-Skłodowska University, Lublin Monika Kozłowska, [email protected]; Wiesław -
The Current Status of the Family Russulaceae in the Uttarakhand Himalaya, India
Mycosphere Doi 10.5943/mycosphere/3/4/12 The current status of the family Russulaceae in the Uttarakhand Himalaya, India Joshi S1*, Bhatt RP1, and Stephenson SL2 1Departmet of Botany and Microbiology, H. N. B. Garhwal University, Srinagar Garhwal, Uttarakhand 246 174, India – [email protected], [email protected] 2Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, USA – [email protected] Joshi S, Bhatt RP, Stephenson SL 2012 – The current status of the family Russulaceae in the Uttarakhand Himalaya, India. Mycosphere 3(4), 486–501, Doi 10.5943 /mycosphere/3/4/12 The checklist provided herein represents a current assessment of what is known about the ectomycorrizal family Russulaceae from the Uttarakhand Himalaya. The checklist includes 105 taxa, 55 of which belong to the genus Lactarius Pers. ex S.F. Gray and 50 are members of the genus Russula Pers. ex S.F. Gray. Eleven of the species of Lactarius (listed as Lactarius sp. 1 to 11 in the checklist) are apparently new to science and have yet to be formally described. Key words – Ectomycorrhizal fungi – Himalayan Mountains – Lactarius – Russula – Taxonomy Article Information Received 24 July 2012 Accepted 31 July 2012 Published online 28 August 2012 *Corresponding author: Sweta Joshi – e-mail – [email protected] Introduction crucial niche relationships of the various The family Russulaceae is one of the elements that make up the forest biota, largest ectomycorrhizal families in the order including the macrofungi themselves. The Agaricales. The family was established by large gap that exists with respect to our Roze (1876) as the Russulariees (non. -
Molecular Systematics of the Sordariales: the Order and the Family Lasiosphaeriaceae Redefined
Mycologia, 96(2), 2004, pp. 368±387. q 2004 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae rede®ned Sabine M. Huhndorf1 other families outside the Sordariales and 22 addi- Botany Department, The Field Museum, 1400 S. Lake tional genera with differing morphologies subse- Shore Drive, Chicago, Illinois 60605-2496 quently are transferred out of the order. Two new Andrew N. Miller orders, Coniochaetales and Chaetosphaeriales, are recognized for the families Coniochaetaceae and Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 Chaetosphaeriaceae respectively. The Boliniaceae is University of Illinois at Chicago, Department of accepted in the Boliniales, and the Nitschkiaceae is Biological Sciences, Chicago, Illinois 60607-7060 accepted in the Coronophorales. Annulatascaceae and Cephalothecaceae are placed in Sordariomyce- Fernando A. FernaÂndez tidae inc. sed., and Batistiaceae is placed in the Euas- Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 comycetes inc. sed. Key words: Annulatascaceae, Batistiaceae, Bolini- aceae, Catabotrydaceae, Cephalothecaceae, Ceratos- Abstract: The Sordariales is a taxonomically diverse tomataceae, Chaetomiaceae, Coniochaetaceae, Hel- group that has contained from seven to 14 families minthosphaeriaceae, LSU nrDNA, Nitschkiaceae, in recent years. The largest family is the Lasiosphaer- Sordariaceae iaceae, which has contained between 33 and 53 gen- era, depending on the chosen classi®cation. To de- termine the af®nities and taxonomic placement of INTRODUCTION the Lasiosphaeriaceae and other families in the Sor- The Sordariales is one of the most taxonomically di- dariales, taxa representing every family in the Sor- verse groups within the Class Sordariomycetes (Phy- dariales and most of the genera in the Lasiosphaeri- lum Ascomycota, Subphylum Pezizomycotina, ®de aceae were targeted for phylogenetic analysis using Eriksson et al 2001). -
Performance of Four Ribosomal DNA Regions to Infer Higher-Level Phylogenetic Relationships of Inoperculate Euascomycetes (Leotiomyceta)
Molecular Phylogenetics and Evolution 34 (2005) 512–524 www.elsevier.com/locate/ympev Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta) H. Thorsten Lumbscha,¤, Imke Schmitta, Ralf Lindemuthb, Andrew Millerc, Armin Mangolda,b, Fernando Fernandeza, Sabine Huhndorfa a Department of Botany, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA b Universität Duisburg-Essen, Campus Essen, 45117 Essen, Germany c Center for Biodiversity, Illinois Natural History Survey, 607 E. Peabody Drive, Champaign, IL 61820, USA Received 9 June 2004; revised 14 October 2004 Available online 1 January 2005 Abstract The inoperculate euascomycetes are Wlamentous fungi that form saprobic, parasitic, and symbiotic associations with a wide vari- ety of animals, plants, cyanobacteria, and other fungi. The higher-level relationships of this economically important group have been unsettled for over 100 years. A data set of 55 species was assembled including sequence data from nuclear and mitochondrial small and large subunit rDNAs for each taxon; 83 new sequences were obtained for this study. Parsimony and Bayesian analyses were per- formed using the four-region data set and all 14 possible subpartitions of the data. The mitochondrial LSU rDNA was used for the Wrst time in a higher-level phylogenetic study of ascomycetes and its use in concatenated analyses is supported. The classes that were recognized in Leotiomyceta ( D inoperculate euascomycetes) in a classiWcation by Eriksson and Winka [Myconet 1 (1997) 1] are strongly supported as monophyletic. The following classes formed strongly supported sister-groups: Arthoniomycetes and Doth- ideomycetes, Chaetothyriomycetes and Eurotiomycetes, and Leotiomycetes and Sordariomycetes. -
NEMF MASTERLIST - Sorted by Taxonomy
NEMF MASTERLIST - Sorted by Taxonomy Sunday, April 24, 2011 Page 1 of 80 Kingdom Phylum Class Order Family Genus and Species Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. globosa Ceratiomyxa fruticulosa var. poroides Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Stemonitidaceae Brefeldia maxima Comatricha dictyospora Comatricha nigra Comatricha sp. Comatricha typhoides Lamproderma sp. Stemonitis axifera Stemonitis axifera, cf. Stemonitis fusca Stemonitis herbatica Stemonitis nigrescens Stemonitis smithii Stemonitis sp. Stemonitis splendens Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Capnodium tiliae Diaporthales Valsaceae Cryphonectria parasitica Valsaria peckii Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces muricatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe polygoni Microsphaera alni Microsphaera alphitoides Microsphaera penicillata Uncinula sp. Halosphaeriales Halosphaeriaceae Cerioporiopsis pannocintus Hysteriales Hysteriaceae Glonium stellatum Hysterium angustatum Micothyriales Microthyriaceae Microthyrium sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Ostropales Graphidaceae Graphis scripta Stictidaceae Cryptodiscus sp. 1 Peltigerales Collemataceae Leptogium cyanescens Peltigeraceae Peltigera canina Peltigera evansiana Peltigera horizontalis Peltigera membranacea Peltigera praetextala Pertusariales Icmadophilaceae Dibaeis baeomyces Pezizales -
An Overview of the Systematics of the Sordariomycetes Based on a Four-Gene Phylogeny
Mycologia, 98(6), 2006, pp. 1076–1087. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny Ning Zhang of 16 in the Sordariomycetes was investigated based Department of Plant Pathology, NYSAES, Cornell on four nuclear loci (nSSU and nLSU rDNA, TEF and University, Geneva, New York 14456 RPB2), using three species of the Leotiomycetes as Lisa A. Castlebury outgroups. Three subclasses (i.e. Hypocreomycetidae, Systematic Botany & Mycology Laboratory, USDA-ARS, Sordariomycetidae and Xylariomycetidae) currently Beltsville, Maryland 20705 recognized in the classification are well supported with the placement of the Lulworthiales in either Andrew N. Miller a basal group of the Sordariomycetes or a sister group Center for Biodiversity, Illinois Natural History Survey, of the Hypocreomycetidae. Except for the Micro- Champaign, Illinois 61820 ascales, our results recognize most of the orders as Sabine M. Huhndorf monophyletic groups. Melanospora species form Department of Botany, The Field Museum of Natural a clade outside of the Hypocreales and are recognized History, Chicago, Illinois 60605 as a distinct order in the Hypocreomycetidae. Conrad L. Schoch Glomerellaceae is excluded from the Phyllachorales Department of Botany and Plant Pathology, Oregon and placed in Hypocreomycetidae incertae sedis. In State University, Corvallis, Oregon 97331 the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported Keith A. Seifert clade containing the Boliniales and Chaetosphaer- Biodiversity (Mycology and Botany), Agriculture and iales. Aspects of morphology, ecology and evolution Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada are discussed. Amy Y. -
<I>Rickenella Fibula</I>
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2017 Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte- associate in the Hymenochaetales Hailee Brynn Korotkin University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Evolution Commons Recommended Citation Korotkin, Hailee Brynn, "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales. " Master's Thesis, University of Tennessee, 2017. https://trace.tennessee.edu/utk_gradthes/4886 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Hailee Brynn Korotkin entitled "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Ecology -
A Compilation for the Iberian Peninsula (Spain and Portugal)
Nova Hedwigia Vol. 91 issue 1–2, 1 –31 Article Stuttgart, August 2010 Mycorrhizal macrofungi diversity (Agaricomycetes) from Mediterranean Quercus forests; a compilation for the Iberian Peninsula (Spain and Portugal) Antonio Ortega, Juan Lorite* and Francisco Valle Departamento de Botánica, Facultad de Ciencias, Universidad de Granada. 18071 GRANADA. Spain With 1 figure and 3 tables Ortega, A., J. Lorite & F. Valle (2010): Mycorrhizal macrofungi diversity (Agaricomycetes) from Mediterranean Quercus forests; a compilation for the Iberian Peninsula (Spain and Portugal). - Nova Hedwigia 91: 1–31. Abstract: A compilation study has been made of the mycorrhizal Agaricomycetes from several sclerophyllous and deciduous Mediterranean Quercus woodlands from Iberian Peninsula. Firstly, we selected eight Mediterranean taxa of the genus Quercus, which were well sampled in terms of macrofungi. Afterwards, we performed a database containing a large amount of data about mycorrhizal biota of Quercus. We have defined and/or used a series of indexes (occurrence, affinity, proportionality, heterogeneity, similarity, and taxonomic diversity) in order to establish the differences between the mycorrhizal biota of the selected woodlands. The 605 taxa compiled here represent an important amount of the total mycorrhizal diversity from all the vegetation types of the studied area, estimated at 1,500–1,600 taxa, with Q. ilex subsp. ballota (416 taxa) and Q. suber (411) being the richest. We also analysed their quantitative and qualitative mycorrhizal flora and their relative richness in different ways: woodland types, substrates and species composition. The results highlight the large amount of mycorrhizal macrofungi species occurring in these mediterranean Quercus woodlands, the data are comparable with other woodland types, thought to be the richest forest types in the world. -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
PROF. SINA ADL (Orcid ID : 0000-0001-6324-6065) PROF. DAVID BASS (Orcid ID : 0000-0002-9883-7823) DR. CÉDRIC BERNEY (Orcid ID : 0000-0001-8689-9907) DR. PACO CÁRDENAS (Orcid ID : 0000-0003-4045-6718) DR. IVAN CEPICKA (Orcid ID : 0000-0002-4322-0754) DR. MICAH DUNTHORN (Orcid ID : 0000-0003-1376-4109) PROF. BENTE EDVARDSEN (Orcid ID : 0000-0002-6806-4807) DR. DENIS H. LYNN (Orcid ID : 0000-0002-1554-7792) DR. EDWARD A.D MITCHELL (Orcid ID : 0000-0003-0358-506X) PROF. JONG SOO PARK (Orcid ID : 0000-0001-6253-5199) DR. GUIFRÉ TORRUELLA (Orcid ID : 0000-0002-6534-4758) Article DR. VASILY V. ZLATOGURSKY (Orcid ID : 0000-0002-2688-3900) Article type : Original Article Corresponding author mail id: [email protected] Adl et al.---Classification of Eukaryotes Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla, David Bassb,c, Christopher E. Laned, Julius Lukeše,f, Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj, Matthew W. Brownk,l, Fabien Burkim, Paco Cárdenasn, Ivan Čepičkao, Ludmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s, Bente Edvardsent, Yana Eglitu, Laure Guillouv, Vladimír Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Sergey Karpovh, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,aa, Daniel J. G. Lahrab, Enrique Laraac,ad, Line Le Gallae, Denis H. Lynnaf,ag, David G. Mannah, Ramon Massana i Moleraq, Edward A. D. Mitchellac,ai , Christine Morrowaj, Jong Soo Parkak, Jan W. Pawlowskial, Martha J. Powellam, Daniel J. Richteran, Sonja Rueckertao, Lora Shadwickap, Satoshi Shimanoaq, Frederick W. Spiegelap, Guifré Torruella i Cortesar, Noha Youssefas, Vasily Zlatogurskyh,at, Qianqian Zhangau,av.