Aspergillus Penicillioides Speg. Implicated in Keratomycosis
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Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides
H OH metabolites OH Review Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides Yaojie Guo , Jens C. Frisvad and Thomas O. Larsen * Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Building 221, DK-2800 Kgs. Lyngby, Denmark; [email protected] (Y.G.); [email protected] (J.C.F.) * Correspondence: [email protected]; Tel.: +45-4525-2632 Received: 12 May 2020; Accepted: 8 June 2020; Published: 15 June 2020 Abstract: Recently, a rare class of nonribosomal peptides (NRPs) bearing a unique Oxepine-Pyrimidinone-Ketopiperazine (OPK) scaffold has been exclusively isolated from fungal sources. Based on the number of rings and conjugation systems on the backbone, it can be further categorized into three types A, B, and C. These compounds have been applied to various bioassays, and some have exhibited promising bioactivities like antifungal activity against phytopathogenic fungi and transcriptional activation on liver X receptor α. This review summarizes all the research related to natural OPK NRPs, including their biological sources, chemical structures, bioassays, as well as proposed biosynthetic mechanisms from 1988 to March 2020. The taxonomy of the fungal sources and chirality-related issues of these products are also discussed. Keywords: oxepine; nonribosomal peptides; bioactivity; biosynthesis; fungi; Aspergillus 1. Introduction Nonribosomal peptides (NRPs), mostly found in bacteria and fungi, are a class of peptidyl secondary metabolites biosynthesized by large modularly organized multienzyme complexes named nonribosomal peptide synthetases (NRPSs) [1]. These products are amongst the most structurally diverse secondary metabolites in nature; they exhibit a broad range of activities, which have been exploited in treatments such as the immunosuppressant cyclosporine A and the antibiotic daptomycin [2,3]. -
Distribution of Methionine Sulfoxide Reductases in Fungi and Conservation of the Free- 2 Methionine-R-Sulfoxide Reductase in Multicellular Eukaryotes
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Distribution of methionine sulfoxide reductases in fungi and conservation of the free- 2 methionine-R-sulfoxide reductase in multicellular eukaryotes 3 4 Hayat Hage1, Marie-Noëlle Rosso1, Lionel Tarrago1,* 5 6 From: 1Biodiversité et Biotechnologie Fongiques, UMR1163, INRAE, Aix Marseille Université, 7 Marseille, France. 8 *Correspondence: Lionel Tarrago ([email protected]) 9 10 Running title: Methionine sulfoxide reductases in fungi 11 12 Keywords: fungi, genome, horizontal gene transfer, methionine sulfoxide, methionine sulfoxide 13 reductase, protein oxidation, thiol oxidoreductase. 14 15 Highlights: 16 • Free and protein-bound methionine can be oxidized into methionine sulfoxide (MetO). 17 • Methionine sulfoxide reductases (Msr) reduce MetO in most organisms. 18 • Sequence characterization and phylogenomics revealed strong conservation of Msr in fungi. 19 • fRMsr is widely conserved in unicellular and multicellular fungi. 20 • Some msr genes were acquired from bacteria via horizontal gene transfers. 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
The Evaluation of Adsorbents for the Removal of Aflatoxin M1 from Contaminated Milk
Mississippi State University Scholars Junction Theses and Dissertations Theses and Dissertations 1-1-2015 The Evaluation of Adsorbents for the Removal of Aflatoxin M1 from Contaminated Milk Erika D. Womack Follow this and additional works at: https://scholarsjunction.msstate.edu/td Recommended Citation Womack, Erika D., "The Evaluation of Adsorbents for the Removal of Aflatoxin M1 from Contaminated Milk" (2015). Theses and Dissertations. 4456. https://scholarsjunction.msstate.edu/td/4456 This Dissertation - Open Access is brought to you for free and open access by the Theses and Dissertations at Scholars Junction. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Scholars Junction. For more information, please contact [email protected]. Automated Template B: Created by James Nail 2011V2.1 The evaluation of adsorbents for the removal of aflatoxin M1 from contaminated milk By Erika D. Womack A Dissertation Submitted to the Faculty of Mississippi State University in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Molecular Biology in the Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology Mississippi State, Mississippi December 2015 Copyright by Erika D. Womack 2015 The evaluation of adsorbents for the removal of aflatoxin M1 from contaminated milk By Erika D. Womack Approved: ____________________________________ Darrell L. Sparks, Jr. (Major Professor) ____________________________________ Ashli Brown-Johnson (Minor Professor) -
DNA Fingerprinting Analysis of Petromyces Alliaceus (Aspergillus Section Flavi)
276 1039 DNA fingerprinting analysis of Petromyces alliaceus (Aspergillus section Flavi) Cesaria E. McAlpin and Donald T. Wicklow Abstract: The objective of this study was to evaluate the ability of the Aspergillus flavus pAF28 DA probe to pro duce DA fingerprints for distinguishing among genotypes of Petromyces alliaceus (Aspergillus section Flavi), a fun gus considered responsible for the ochratoxin A contamination that is occasionally observed in California fig orchards. P alliaceus (14 isolates), Petromyces albertensis (one isolate), and seven species of Aspergillus section Circumdati (14 isolates) were analyzed by DA fingerprinting using a repetitive sequence DNA probe pAF28 derived from A. flavus. The presence of hybridization bands with the DA probe and with the P alliaceus or P albertensis genomic DA in dicates a close relationship between A. flavus and P alliaceus. Twelve distinct DA fingerprint groups or genotypes were identified among the 15 isolates of Petromyces. Conspecificity of P alliaceus and P albertensis is suggested based on DA fingerprints. Species belonging to Aspergillus section Circumdati hybridized only slightly at the 7.0-kb region with the repetitive DA probe, unlike the highly polymorphic hybridization patterns obtained from P alliaceus and A. jZavus, suggesting very little homology of the probe to Aspergillus section Circumdati genomic DNA. The pAF28 DA probe offers a tool for typing and monitoring specific P alliaceus clonal populations and for estimating the genotypic diversity of P alliaceus in orchards, -
Characterization of Terrelysin, a Potential Biomarker for Aspergillus Terreus
Graduate Theses, Dissertations, and Problem Reports 2012 Characterization of terrelysin, a potential biomarker for Aspergillus terreus Ajay Padmaj Nayak West Virginia University Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Nayak, Ajay Padmaj, "Characterization of terrelysin, a potential biomarker for Aspergillus terreus" (2012). Graduate Theses, Dissertations, and Problem Reports. 3598. https://researchrepository.wvu.edu/etd/3598 This Dissertation is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Dissertation has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Characterization of terrelysin, a potential biomarker for Aspergillus terreus Ajay Padmaj Nayak Dissertation submitted to the School of Medicine at West Virginia University in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Immunology and Microbial Pathogenesis Donald H. Beezhold, -
Antibacterial Activity of Aspergillus Isolated from Different Algerian Ecosystems
Vol. 16(32), pp. 1699-1704, 9 August, 2017 DOI: 10.5897/AJB2017.16086 Article Number: 28412E265692 ISSN 1684-5315 African Journal of Biotechnology Copyright © 2017 Author(s) retain the copyright of this article http://www.academicjournals.org/AJB Full Length Research Paper Antibacterial activity of Aspergillus isolated from different Algerian ecosystems Bramki Amina1*, Ghorri Sana1, Jaouani Atef2, Dehimat Laid1 and Kacem Chaouche Noreddine1 1Laboratory of Mycology, Biotechnology and Microbial Activity, University of Mentouri Brothers- Constantine, P.O. Box, 325 Ain El Bey Way, Constantine, Algeria. 2Laboratory of Microorganisms and Active Biomolecules, University of Tunis El Manar, Campus Farhat Hached, B.P. no. 94 - Rommana, Tunis 1068, Tunisia. Received 26 May, 2017; Accepted 4 August, 2017 Thirty two strains of Aspergillus genus were isolated from soil samples obtained from particular ecosystems: Laghouat endowed with a desert climate and Teleghma with a warm and temperate climate. Based on the morphological aspect, this collection was subdivided into ten phenotypic groups. This identification was confirmed by molecular analyzes using a molecular marker of the genu ribosomal 18s. This marker will allow us to associate our sequences with those of known organisms. In order to discover new antibiotic molecules, the antibacterial activity was performed against two Gram positive bacteria: Staphylococcus aureus and Bacillus subtilis and also two Gram-negative bacteria: Escherichia coli and Pseudomonas aeroginosa, using two different techniques: Agar cylinders and disks technique. The results show that the fungal species have an activity against at least one test bacterium. The Gram positive bacteria were the most affected, where the averages of the inhibition zones reach 34.33 mm. -
Lists of Names in Aspergillus and Teleomorphs As Proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (Doi: 10.3852/14-0
Lists of names in Aspergillus and teleomorphs as proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (doi: 10.3852/14-060), based on retypification of Aspergillus with A. niger as type species John I. Pitt and John W. Taylor, CSIRO Food and Nutrition, North Ryde, NSW 2113, Australia and Dept of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA Preamble The lists below set out the nomenclature of Aspergillus and its teleomorphs as they would become on acceptance of a proposal published by Pitt and Taylor (2014) to change the type species of Aspergillus from A. glaucus to A. niger. The central points of the proposal by Pitt and Taylor (2014) are that retypification of Aspergillus on A. niger will make the classification of fungi with Aspergillus anamorphs: i) reflect the great phenotypic diversity in sexual morphology, physiology and ecology of the clades whose species have Aspergillus anamorphs; ii) respect the phylogenetic relationship of these clades to each other and to Penicillium; and iii) preserve the name Aspergillus for the clade that contains the greatest number of economically important species. Specifically, of the 11 teleomorph genera associated with Aspergillus anamorphs, the proposal of Pitt and Taylor (2014) maintains the three major teleomorph genera – Eurotium, Neosartorya and Emericella – together with Chaetosartorya, Hemicarpenteles, Sclerocleista and Warcupiella. Aspergillus is maintained for the important species used industrially and for manufacture of fermented foods, together with all species producing major mycotoxins. The teleomorph genera Fennellia, Petromyces, Neocarpenteles and Neopetromyces are synonymised with Aspergillus. The lists below are based on the List of “Names in Current Use” developed by Pitt and Samson (1993) and those listed in MycoBank (www.MycoBank.org), plus extensive scrutiny of papers publishing new species of Aspergillus and associated teleomorph genera as collected in Index of Fungi (1992-2104). -
Haloalkalitolerant and Haloalkaliphilic Fungal Diversity of Acıgöl/Turkey
MANTAR DERGİSİ/The Journal of Fungus Nisan(2021)12(1)33-41 Geliş(Recevied) :07.12.2020 Research Article Kabul(Accepted) :10.01.2021 Doi: 10.30708.mantar.836325 Haloalkalitolerant and Haloalkaliphilic Fungal Diversity of Acıgöl/Turkey Fatma AYVA1, Rasime DEMİREL2*, Semra ILHAN3, Lira USAKBEK KYZY4, Uğur ÇİĞDEM5, Niyazi Can ZORLUER6, Emine IRDEM5, Ercan ÖZBİÇEN4, Esma OCAK5, Gamze TUNCA4 * Corresponding author e-mail: [email protected] 1 Eskisehir Technical University, Faculty of Science, Department of Biology, TR-26470 Eskisehir, Turkey Orcid ID: 0000-0002-7072-2928/ [email protected] 2 Eskisehir Technical University, Faculty of Science, Department of Biology, TR-26470 Eskisehir, Turkey Orcid ID: 0000-0001-8512-1597/ [email protected] 3 Eskişehir Osmangazi University, Faculty of Science and Letters, Department of Biology, TR- 26040 Eskisehir, Turkey Orcid ID: 0000-0002-3787-2449/ [email protected] 4 Eskişehir Osmangazi University, Graduate School of Natural and Applied Sciences, Department of Biology, TR-26040, Eskisehir, Turkey Orcid ID: 0000-0002-9424-4473/ [email protected] Orcid ID: 0000-0001-5646-6115/ ercanozbı[email protected] Orcid ID: 0000-0002-4126-8340/ [email protected] 5 Eskişehir Osmangazi University, Graduate School of Natural and Applied Sciences, Department of Biotechnology and Biosafety, TR-26040, Eskisehir, Turkey Orcid ID: 0000-0003-4790-494X/ [email protected] Orcid ID: 0000-0002-2955-298X/ [email protected] Orcid ID: 0000-0002-9085-4151/ [email protected] 6 Eskişehir Osmangazi University, Faculty of Science and Letters, Programme of Biology, TR- 26040 Eskisehir, Turkey Orcid ID: 0000-0002-2394-2194/ [email protected] Abstract: Microfungi are the most common microorganisms found in range from environment. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Natural Bioactive Compounds from Marine-Derived Fungi
marine drugs Review Potential Pharmacological Resources: Natural Bioactive Compounds from Marine-Derived Fungi Liming Jin, Chunshan Quan *, Xiyan Hou and Shengdi Fan College of Life Science, Dalian Nationalities University, No. 18, LiaoHe West Road, Dalian 116600, China; [email protected] (L.J.); [email protected] (X.H.); [email protected] (S.F.) * Correspondence: [email protected]; Tel.: +86-411-8765-6219; Fax: +86-411-8764-4496 Academic Editor: Vassilios Roussis Received: 27 January 2016; Accepted: 29 March 2016; Published: 22 April 2016 Abstract: In recent years, a considerable number of structurally unique metabolites with biological and pharmacological activities have been isolated from the marine-derived fungi, such as polyketides, alkaloids, peptides, lactones, terpenoids and steroids. Some of these compounds have anticancer, antibacterial, antifungal, antiviral, anti-inflammatory, antioxidant, antibiotic and cytotoxic properties. This review partially summarizes the new bioactive compounds from marine-derived fungi with classification according to the sources of fungi and their biological activities. Those fungi found from 2014 to the present are discussed. Keywords: marine-derived fungi; fungal metabolites; bioactive compounds; natural products 1. Introduction The oceans, which cover more than 70% of the earth’s surface and more than 95% of the earth’s biosphere, harbor various marine organisms. Because of the special physical and chemical conditions in the marine environment, almost every class of marine organism displays a variety -
Mycoviruses – the Potential Use in Biological Plant Protection
ProgreSS IN PLANT PROTeCTION DOI: 10.14199/ppp-2019-023 59 (3): 171-182, 2019 Published online: 16.09.2019 ISSN 1427-4337 Received: 10.06.2019 / Accepted: 02.09.2019 Mycoviruses – the potential use in biological plant protection Mykowirusy – perspektywy wykorzystania w biologicznej ochronie roślin Marcin Łaskarzewski1*, Jolanta Kiełpińska2, Kinga Mazurkiewicz-Zapałowicz3 Summary Biological plant protection is an alternative mean to the chemical pesticides used on a large scale, the use of which carries a great danger for the functioning of living organisms, including humans. Many mycoviruses, which are able to interfere with the host’s phenotypic image, have shown great potential in the control of phytopathogenic fungi. The symptoms are composed of the phenomenon of hypovirulence, i.e. the reduction of fungal pathogenicity in relation to the plant. There are known mycoviruses capable of infecting the most important phytopathogens, including Magnaporthe oryzae, Botrytis cinerea, Fusarium graminearum or Rhizoctonia solani. This is the basis for continuing research to develop effective antifungal agents. Key words: phytopathogenic fungi, mycovirus, biological control of crop, fungal diseases, hypovirulence Streszczenie Biologiczna ochrona roślin stanowi alternatywę dla wykorzystywanych na masową skalę związków chemicznych, których stosowanie niesie ze sobą duże niebezpieczeństwo dla funkcjonowania organizmów żywych, w tym człowieka. Ogromny potencjał w walce z grzybami fitopatogennymi kryje się w mykowirusach, które są zdolne do ingerowania w obraz fenotypowy gospodarza, ograniczając między innymi tempo wzrostu grzybni, zdolność sporulacji czy wywołując efekt cytolityczny. Powyższe objawy składają się na zjawisko hipowirulencji, czyli obniżenia patogenności grzyba w stosunku do rośliny. Poznane zostały mykowirusy zdolne do infekowania najistotniejszych fitopatogenów, w tym Magnaporthe oryzae, Botrytis cinerea, Fusarium graminearum czy Rhizoctonia solani.