Collation and Validation of Museum Collection Databases Related to the Distribution of Marine Sponges in Northern Australia
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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
A Novel Dispersal Mechanism of a Coral-Threatening Sponge, Terpios Hoshinota (Suberitidae, Porifera)
A Novel Dispersal Mechanism of a Coral-Threatening Sponge, Terpios hoshinota (Suberitidae, Porifera) Keryea Soong1,*, Sun-Lin Yang1, and Chaolun Allen Chen2 1Institute of Marine Biology and Asia-Pacific Ocean Research Center, National Sun Yat-sen University, Kaohsiung 804, Taiwan 2Biodiversity Research Center, Academia Sinica, Taipei 115, and Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan (Accepted April 10, 2009) Terpios hoshinota, a blackish encrusting cyanobacteriosponge, is known to overgrow and kill a wide range of stony coral hosts, mostly on Pacific reefs (Bryan 1973, Plucer-Rosario 1987, Rützler and Muzik 1993). An outbreak of the sponge occurred in 2008 at Green I. (22°39'N, 121°29'E), off the southeastern coast of Taiwan, where up to 30% of coral colonies were infected on certain reefs within a couple of years of its first discovery (Liao et al. 2007). In a test of methods to stop the sponge from expanding, we used dark plastic sheets (10 x 10 cm), with transparent ones as controls, to cover the advancing sponge fronts without touching the substrate corals. The idea was to block the sunlight needed by the symbiotic cyanobacteria for growth. The shading caused the coral hosts to bleach and most of the sponges to stop advancing. But, in some cases within 2 wk, the sponges had extended thin tissue threads which crossed the shaded and presumably uninhabitable area under the dark plates. Once reaching light on the other side of the dark plate, the sponge thread quickly expanded in area and resumed normal growth (Fig. 1A). The capability to cross unsuitable habitats with pioneering tissue obviously enables the sponge to overgrow new coral surfaces and infect separate colonies in the neighborhood. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Suberitidae (Demospongiae, Hadromerida) From
Beaufortia INSTITUTE OF TAXONOMIC ZOOLOGY (ZOOLOGICAL MUSEUM) UNIVERSITY OF AMSTERDAM Vol. 43 no. 11 December 31, 1993 Suberitidae (Demospongiae, Hadromerida) from the North Aegean Sea EleniVoultsiadou-Koukoura.*& Rob W. M. van Soest** *Department University ofThessaloniki, 54006 Thessaloniki, Greece **Institute of Taxonomic (Zoological Museum), University ofAmsterdam, P.O.Box 94766, 1090 GTAmsterdam, TheNetherlands Keywords: Sponges, Hadromerida, Suberitidae, North Aegean Sea Abstract Sampling in the North Aegean Sea yielded nine species of the family Suberitidae, four of which, Pseudosuberites sulphureus, P. Suberiles for the fauna ofthe Eastern and three hyalinus, ficus and S. syringella, are new Mediterranean, more, S. carnosus, S. and S. records for the fauna of the Sea. For each of the nine the domuncula, massa, are new Aegean species comments on systematics, as well as geographical and ecological informationis given. A redescription is given of the littleknown species Suberites massa Nardo. A review ofthe distributionof all Mediterranean Suberitidae is also presented, in which it is con- in materialhave been from the Eastern cluded that a further three species not represented our reported Mediterranean, and P. the viz. Laxosuberites ectyoninus, Prosuberites longispina, epiphytum. Six suberitids reported from other parts of Mediterra- nean so far have not been found in the Eastern Mediterranean. INTRODUCTION siadou-Koukoura, et al. 1991; Voultsiadou- Koukoura & Van Soest 1991a,b; Voultsiadou- of Eastern Mediterranean is Koukoura & the results of the Knowledge sponges Koukouras, 1993), that of other of the Med- have been and are poor compared to parts sponge collecting being re- iterranean Van 1994: Recent several science and (cf. Soest, Fig. 2). ported; species new to appar- collecting activities in the North Aegean Sea ently endemic to the Eastern Mediterranean been of have been described. -
Računalna Analiza Dugih Nekodirajućih RNA Ogulinske Špiljske Spužvice (Eunapius Subterraneus)
Računalna analiza dugih nekodirajućih RNA ogulinske špiljske spužvice (Eunapius subterraneus) Bodulić, Kristian Master's thesis / Diplomski rad 2020 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Science / Sveučilište u Zagrebu, Prirodoslovno-matematički fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:217:310016 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-04 Repository / Repozitorij: Repository of Faculty of Science - University of Zagreb Sveučilište u Zagrebu Prirodoslovno-matematički fakultet Biološki odsjek Kristian Bodulić Računalna analiza dugih nekodirajućih RNA ogulinske špiljske spužvice (Eunapius subterraneus) Diplomski rad Zagreb, 2020. Ovaj rad izrađen je u Grupi za bioinformatiku na Zavodu za molekularnu biologiju Prirodoslovno-matematičkog fakulteta Sveučilišta u Zagrebu pod vodstvom prof. dr. sc. Kristiana Vlahovičeka. Rad je predan na ocjenu Biološkom odsjeku Prirodoslovno- matematičkog fakulteta Sveučilišta u Zagrebu radi stjecanja zvanja magistar molekularne biologije. Zahvaljujem mentoru prof. dr. sc. Kristianu Vlahovičeku na stručnom vodstvu te pruženim savjetima, znanju i vremenu. Zahvaljujem Grupi za bioinformatiku na stečenom znanju i iskustvu te ugodnim trenutcima provedenim u uredu u posljednje dvije godine. Posebno zahvaljujem obitelji i prijateljima na velikoj podršci. TEMELJNA DOKUMENTACIJSKA KARTICA Sveučilište u Zagrebu Prirodoslovno-matematički fakultet Biološki odsjek Diplomski rad RAČUNALNA ANALIZA DUGIH NEKODIRAJUĆIH RNA OGULINSKE ŠPILJSKE SPUŽVICE (EUNAPIUS SUBTERRANEUS) Kristian Bodulić Rooseveltov trg 6, 10000 Zagreb. Hrvatska Pojavom metoda sekvenciranja druge generacije, duge nekodirajuće RNA postale su vrlo zanimljiv predmet bioloških istraživanja. Njihove uloge dokazane su u velikom broju bioloških procesa, od kojih je najvažnije spomenuti regulaciju ekspresije brojnih gena. Ipak, ova skupina RNA još uvijek nije istražena u brojnim koljenima životinja, uključujući i spužve. -
(Familia: Halichondriidae) Para Un Sistema Lagunar Del Golfo De México Revista Ciencias Marinas Y Costeras, Vol
Revista Ciencias Marinas y Costeras ISSN: 1659-455X ISSN: 1659-407X Universidad Nacional, Costa Rica de la Cruz-Francisco, Vicencio; Rodríguez Muñoz, Salvador; León Méndez, Ramses Giovanni; Duran López, Aarón; Argüelles-Jiménez, Jimmy Primer registro de Amorphinopsis atlantica Carvalho, Hadju, Mothes & van Soest, 2004 (Familia: Halichondriidae) para un sistema lagunar del golfo de México Revista Ciencias Marinas y Costeras, vol. 11, núm. 1, 2019, -Junio, pp. 61-70 Universidad Nacional, Costa Rica DOI: https://doi.org/10.15359/revmar.11-1.5 Disponible en: https://www.redalyc.org/articulo.oa?id=633766165005 Cómo citar el artículo Número completo Sistema de Información Científica Redalyc Más información del artículo Red de Revistas Científicas de América Latina y el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto Primer registro de Amorphinopsis atlantica Carvalho, Hadju, Mothes & van Soest, 2004 (Familia: Halichondriidae) para un sistema lagunar del golfo de México First record of Amorphinopsis atlantica Carvalho, Hadju, Mothes & van Soest, 2004 (Family: Halichondriidae) for a lagoon system in the Gulf of Mexico Vicencio de la Cruz-Francisco1*, Jimmy Argüelles-Jiménez2, Salvador Rodríguez Muñoz1, Ramses Giovanni León Méndez1 y Aarón Duran López1 RESUMEN Se registra por primera vez la presencia de Amorphinopsis atlantica en un sistema lagunar del golfo de México. Esta esponja fue reportada en Brasil donde prefiere asentarse sobre costas rocosas y en estuarios. Las observaciones y recolecta de especímenes provienen de la laguna de Tampamachoco, ubicada al norte de Veracruz, México. Los ejemplares registrados se contemplaron como epibiontes en bancos ostrícolas de Isognomon alatus, donde destacaron por su coloración amarilla, y su forma incrustante ahí masiva con ramificaciones prolongadas. -
Studio Dei Fattori Di Crescita Coinvolti Nello Sviluppo Tissutale E Nella
Università degli Studi di Genova Dipartimento di Scienze della terra, dell’ambiente e della vita (DISTAV) Dottorato in: SCIENZE E TECNOLOGIE PER L’AMBIENTE E IL TERRITORIO (STAT) Curriculum: SCIENZE DEL MARE XXXI CICLO Dottorando: Dott. Gallus Lorenzo ssa Tutore: Prof. Scarfì Sonia Studio dei fattori di crescita coinvolti nello sviluppo tissutale e nella deposizione di matrice extracellulare del porifero Chondrosia reniformis (Nardo, 1847) con metodi immunoistochimici e di biologia molecolare. 1 “ […] alcuni animali sono stazionari e alcuni sono erratici. Gli animali stazionari si trovano nell'acqua, ma nessuna di queste creature si trova sulla terraferma. Nell'acqua ci sono molte creature che vivono in stretta adesione ad un oggetto esterno, come nel caso di diversi tipi di ostriche. E, a proposito, la spugna sembra essere dotata di una certa sensibilità: come prova di ciò si riporta che la difficoltà nel distaccarla dai suoi ormeggi aumenta se il movimento per distaccarla non viene applicato di nascosto.” (Immagine 1) Aristotele, Historia Animalium. The works of Aristotle, by Aristotle; Ross, W. D. (William David), 1877-; Smith, J. A. (John Alexander), 1863-1939. 1910-1931. Publisher Oxford : Clarendon Press Contributions to Zoology, 76 (2) 103-120 (2007) Marine invertebrate diversity in Aristotle’s zoology Eleni Voultsiadou, Dimitris Vafidis. (Immagine 1) Costantinopoli, aristotele, historia animalium e altri scritti, xii sec., pluteo 87,4.JPG https://creativecommons.org/licenses/by/3.0/legalcode https://commons.wikimedia.org/wiki/User:Sailko 2 “Nel 1847, (Giandomenico Nardo) lesse al nostro Istituto (Istituto Veneto di Scienze Lettere ed Arti, ndr), nell’adunanza del 23 marzo, un’altra Memoria (Immagine 2) intorno ad un prodotto marino da lui raccolto per la prima volta sulle coste dell’Istria fino dal 1823, e conosciuto dai pescatori sotto il nome di Carnume de mar o di Rognone di mare. -
Horizontal Gene Transfer in the Sponge Amphimedon Queenslandica
Horizontal gene transfer in the sponge Amphimedon queenslandica Simone Summer Higgie BEnvSc (Honours) A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2018 School of Biological Sciences Abstract Horizontal gene transfer (HGT) is the nonsexual transfer of genetic sequence across species boundaries. Historically, HGT has been assumed largely irrelevant to animal evolution, though widely recognised as an important evolutionary force in bacteria. From the recent boom in whole genome sequencing, many cases have emerged strongly supporting the occurrence of HGT in a wide range of animals. However, the extent, nature and mechanisms of HGT in animals remain poorly understood. Here, I explore these uncertainties using 576 HGTs previously reported in the genome of the demosponge Amphimedon queenslandica. The HGTs derive from bacterial, plant and fungal sources, contain a broad range of domain types, and many are differentially expressed throughout development. Some domains are highly enriched; phylogenetic analyses of the two largest groups, the Aspzincin_M35 and the PNP_UDP_1 domain groups, suggest that each results from one or few transfer events followed by post-transfer duplication. Their differential expression through development, and the conservation of domains and duplicates, together suggest that many of the HGT-derived genes are functioning in A. queenslandica. The largest group consists of aspzincins, a metallopeptidase found in bacteria and fungi, but not typically in animals. I detected aspzincins in representatives of all four of the sponge classes, suggesting that the original sponge aspzincin was transferred after sponges diverged from their last common ancestor with the Eumetazoa, but before the contemporary sponge classes emerged. -
Small Bathyal Sponge Species from East Mediterranean Revealed by a Non-Regular Soft Bottom Sampling Technique
OPHELIA 57 (3): 145-160 (December 2003) SMALL BATHYAL SPONGE SPECIES FROM EAST MEDITERRANEAN REVEALED BY A NON-REGULAR SOFT BOTTOM SAMPLING TECHNIQUE Ilan1,*, M., Gugel1, J., Galil2, B.S., and Janussen, D3. 1Department of Zoology, Tel Aviv University, Tel Aviv 69978, Israel; 2National Institute of Oceanography, Israel Oceanographic & Limnological Research, P.O. Box 8030, Haifa 31080, Israel; 3Forschungsinstitut und Naturmuseum Senckenberg, Senckenberganlage 25, 60325 Frankfurt am Main, Germany *Address for correspondence. E-mail address: [email protected]; fax: 972-3-640-7274; phone: 972-3-640-8613 ABSTRACT This first study of soft bottom sponges from the frequently show that the sponges attach in sites Levantine bathyal employed a device comprising a of hard substrate (like vertical walls), or to hard plankton net secured atop a Marinovich type semi-bal- fragments within soft bottoms (e.g. Vacelet loon trawl. All of the nearly 500 specimens collected 1969; Boury-Esnault et al. 1994; Maldonado were identified to four sponge species. All four species are of a very small body size. Sponges were not retained and Young 1996). Although the Mediterranean by the larger mesh Marinovich trawl net. The study has been studied extensively, only a handful of describes a new polymastiid species Tentorium levantinum reports relate to its deep-sea sponge fauna n. sp., and a new Rhizaxinella shikmonae n. sp. in addition (Vacelet 1969, 1996; Uriz and Rosell, 1990; to two Calcareans: Sycon faulkneri n. sp. and a Plectroninia Boury-Esnault et al. 1994). The Levantine bat- sp. that appears to be a new species. These sponges, hyal sponge fauna has received even less atten- which inhabit soft bottom environments, have evolved morphological features such as unattached ground- tion. -
Collation and Validation of Museum Collection Databases Related to the Distribution of Marine Sponges in Northern Australia
1 COLLATION AND VALIDATION OF MUSEUM COLLECTION DATABASES RELATED TO THE DISTRIBUTION OF MARINE SPONGES IN NORTHERN AUSTRALIA. JOHN N.A. HOOPER & MERRICK EKINS 2 3 Collation and validation of museum collection databases related to the distribution of marine sponges in Northern Australia (Contract National Oceans Office C2004/020) John N.A. Hooper & Merrick Ekins Queensland Museum, PO Box 3300, South Brisbane, Queensland, 4101, Australia ([email protected], [email protected]) CONTENTS SUMMARY ......................................................................................................................... 6 1. INTRODUCTION ......................................................................................................... 10 1.1. General Introduction ..................................................................................... 10 1.2. Definitions of Australia’s marine bioregions ............................................... 12 2. MATERIALS & METHODS ....................................................................................... 16 2.1. Specimen point-data conversion ................................................................... 16 2.2. Geographic coverage and scales of analysis................................................. 18 2.3. Species distributions....................................................................................... 19 2.4. Modelled distribution datasets and historical sponge data ........................ 20 2.5. Identification of useful datasets and gaps in data, prioritised -
Order Hadromerida Family Suberitidae Aaptos Aaptos (Schmidt) 1864
47 Order Hadromerida Family Suberitidae Aaptos aaptos (Schmidt) 1864 COLOUR: brown, slightly reddish TEXTURE AND SURFACE: when expanded sponge is easily compressible and has a lumpy surface; when contracted sponge is hard and smooth DIMENSIONS: up to 8cm high and 10cm diameter around the head DESCRIPTION: a globe sponge raised on a short fat pedicel. Usually a single apical grouping of oscules. A very few individuals are a paler colour and appear grey-brown. OCCURRENCE: abundant in the Sponge Garden and Sediment Flats, also on Deep Reefs and Waterfall Reef. The photograph also shows Axinella sp. on the left and Raspailia topsenti on the right. 52 Suberites axinelletides Brondsted 1924 COLOUR: pale orange surface, deeper orange internally TEXTURE AND SURFACE: soft and smooth DIMENSIONS: occurs in broken patches of up to 20x20cm, 1.0cm thick DESCRIPTION: sponge forms low mountains apon which are perched the oscules OCCURRENCE: relatively abundant in the Sponge Garden and on Deep Reefs 100JJ 49 Suberites sp. COLOUR: pale brown TEXTURE AND SURFACE: very soft, smooth DIMENSIONS: up to 1.0cm diameter DESCRIPTION: small pimples with a single apical oscule. Also shown in the photograph are axinelloides and Eurypon sp. OCCURRENCE: Deep Reef, not abundant L I —J 200JJ 50 Suberites sp. COLOUR: cream TEXTURE AND SURFACE: very soft and smooth DIMENSIONS: up to 20cm in diameter DESCRIPTION: oscules in small groups over the surface of the sponge. Surface very thin. OCCURRENCE: Raphoxya Garden Cs= i i i my 51 Polymastia sp. COLOUR: chrome yellow TEXTURE AND SURFACE: soft when expanded, compressible when contracted smooth DIMENSIONS: up to 30cm in diameter DESCRIPTION: a hemispherical sponge often found in groups of three or more. -
Morphological Description of Six Species of Suberitida (Porifera
Morphological description of six species of Suberitida (Porifera: Demospongiae) from the unexplored north-eastern coast of Brazil, with emphasis on two new species Humberto Fortunato, Thierry Perez, Gisele Lobo-Hajdu To cite this version: Humberto Fortunato, Thierry Perez, Gisele Lobo-Hajdu. Morphological description of six species of Suberitida (Porifera: Demospongiae) from the unexplored north-eastern coast of Brazil, with emphasis on two new species. Journal of the Marine Biological Association of the UK, Cambridge University Press (CUP), 2020, 100 (3), pp.389-400. 10.1017/S0025315420000296. hal-02548881 HAL Id: hal-02548881 https://hal-amu.archives-ouvertes.fr/hal-02548881 Submitted on 7 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Original Paper Running Head: Suberitida from the unexplored Northeastern Brazil Morphological description of six species of Suberitida (Porifera: Demospongiae) from the unexplored Northeastern Brazil, with emphasis on two new species Humberto F. M. Fortunato1,2, Thierry Pérez3, Gisele Lôbo-Hajdu1,2 1Programa de Pós–Graduação de Oceanografia, Universidade do Estado do Rio de Janeiro, Rua São Francisco Xavier, 524, sala 4018, Bloco E, 20550–013 Maracanã, Rio de Janeiro, Brasil; 2Departamento de Genética, Universidade do Estado do Rio de Janeiro, 524, Rua São Francisco Xavier, 524, PHLC, Sala 205, 20550–013, Maracanã, Rio de Janeiro, Brasil and 3Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale, CNRS, Aix Marseille Université, IRD, Avignon Université.