Species Composition and Geographic Distribution of Invertebrates in Fouling Communities Along the East Coast of the USA: a Regional Perspective
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Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Računalna Analiza Dugih Nekodirajućih RNA Ogulinske Špiljske Spužvice (Eunapius Subterraneus)
Računalna analiza dugih nekodirajućih RNA ogulinske špiljske spužvice (Eunapius subterraneus) Bodulić, Kristian Master's thesis / Diplomski rad 2020 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Science / Sveučilište u Zagrebu, Prirodoslovno-matematički fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:217:310016 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-04 Repository / Repozitorij: Repository of Faculty of Science - University of Zagreb Sveučilište u Zagrebu Prirodoslovno-matematički fakultet Biološki odsjek Kristian Bodulić Računalna analiza dugih nekodirajućih RNA ogulinske špiljske spužvice (Eunapius subterraneus) Diplomski rad Zagreb, 2020. Ovaj rad izrađen je u Grupi za bioinformatiku na Zavodu za molekularnu biologiju Prirodoslovno-matematičkog fakulteta Sveučilišta u Zagrebu pod vodstvom prof. dr. sc. Kristiana Vlahovičeka. Rad je predan na ocjenu Biološkom odsjeku Prirodoslovno- matematičkog fakulteta Sveučilišta u Zagrebu radi stjecanja zvanja magistar molekularne biologije. Zahvaljujem mentoru prof. dr. sc. Kristianu Vlahovičeku na stručnom vodstvu te pruženim savjetima, znanju i vremenu. Zahvaljujem Grupi za bioinformatiku na stečenom znanju i iskustvu te ugodnim trenutcima provedenim u uredu u posljednje dvije godine. Posebno zahvaljujem obitelji i prijateljima na velikoj podršci. TEMELJNA DOKUMENTACIJSKA KARTICA Sveučilište u Zagrebu Prirodoslovno-matematički fakultet Biološki odsjek Diplomski rad RAČUNALNA ANALIZA DUGIH NEKODIRAJUĆIH RNA OGULINSKE ŠPILJSKE SPUŽVICE (EUNAPIUS SUBTERRANEUS) Kristian Bodulić Rooseveltov trg 6, 10000 Zagreb. Hrvatska Pojavom metoda sekvenciranja druge generacije, duge nekodirajuće RNA postale su vrlo zanimljiv predmet bioloških istraživanja. Njihove uloge dokazane su u velikom broju bioloških procesa, od kojih je najvažnije spomenuti regulaciju ekspresije brojnih gena. Ipak, ova skupina RNA još uvijek nije istražena u brojnim koljenima životinja, uključujući i spužve. -
Environmental Heterogeneity and Benthic Macroinvertebrate Guilds in Italian Lagoons Alberto Basset, Nicola Galuppo & Letizia Sabetta
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ESE - Salento University Publishing Transitional Waters Bulletin TWB, Transit. Waters Bull. 1(2006), 48-63 ISSN 1825-229X, DOI 10.1285/i1825226Xv1n1p48 http://siba2.unile.it/ese/twb Environmental heterogeneity and benthic macroinvertebrate guilds in italian lagoons Alberto Basset, Nicola Galuppo & Letizia Sabetta Department of Biological and Environmental Sciences and Technologies University of Salento S.P. Lecce-Monteroni 73100 Lecce RESEARCH ARTICLE ITALY Abstract 1 - Lagoons are ecotones between freshwater, marine and terrestrial biotopes, characterized by internal ecosystem heterogeneity, due to patchy spatial and temporal distribution of biotic and abiotic components, and inter-ecosystem heterogeneity, due to the various terrestrial-freshwater and freshwater-marine interfaces. 2 - Here, we carried out an analysis of environmental heterogeneity and benthic macro-invertebrate guilds in a sample of 26 Italian lagoons based on literature produced over a 25 year period.. 3 - In all, 944 taxonomic units, belonging to 13 phyla, 106 orders and 343 families, were recorded. Most species had a very restricted geographic distribution range. 75% of the macroinvertebrate taxa were observed in less than three of the twenty-six lagoons considered. 4 - Similarity among macroinvertebrate guilds in lagoon ecosystems was remarkably low, ranging from 10.5%±7.5% to 34.2%±14.4% depending on the level of taxonomic resolution. 5 - Taxonomic heterogeneity was due to both differences in species richness and to differences in species composition: width of seaward outlet, lagoon surface area and water salinity were the most important factors affecting species richness, together accounting for up to 75% of observed inter-lagoon heterogeneity, while distance between lagoons was the most significant factor affecting similarity of species composition. -
(Familia: Halichondriidae) Para Un Sistema Lagunar Del Golfo De México Revista Ciencias Marinas Y Costeras, Vol
Revista Ciencias Marinas y Costeras ISSN: 1659-455X ISSN: 1659-407X Universidad Nacional, Costa Rica de la Cruz-Francisco, Vicencio; Rodríguez Muñoz, Salvador; León Méndez, Ramses Giovanni; Duran López, Aarón; Argüelles-Jiménez, Jimmy Primer registro de Amorphinopsis atlantica Carvalho, Hadju, Mothes & van Soest, 2004 (Familia: Halichondriidae) para un sistema lagunar del golfo de México Revista Ciencias Marinas y Costeras, vol. 11, núm. 1, 2019, -Junio, pp. 61-70 Universidad Nacional, Costa Rica DOI: https://doi.org/10.15359/revmar.11-1.5 Disponible en: https://www.redalyc.org/articulo.oa?id=633766165005 Cómo citar el artículo Número completo Sistema de Información Científica Redalyc Más información del artículo Red de Revistas Científicas de América Latina y el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto Primer registro de Amorphinopsis atlantica Carvalho, Hadju, Mothes & van Soest, 2004 (Familia: Halichondriidae) para un sistema lagunar del golfo de México First record of Amorphinopsis atlantica Carvalho, Hadju, Mothes & van Soest, 2004 (Family: Halichondriidae) for a lagoon system in the Gulf of Mexico Vicencio de la Cruz-Francisco1*, Jimmy Argüelles-Jiménez2, Salvador Rodríguez Muñoz1, Ramses Giovanni León Méndez1 y Aarón Duran López1 RESUMEN Se registra por primera vez la presencia de Amorphinopsis atlantica en un sistema lagunar del golfo de México. Esta esponja fue reportada en Brasil donde prefiere asentarse sobre costas rocosas y en estuarios. Las observaciones y recolecta de especímenes provienen de la laguna de Tampamachoco, ubicada al norte de Veracruz, México. Los ejemplares registrados se contemplaron como epibiontes en bancos ostrícolas de Isognomon alatus, donde destacaron por su coloración amarilla, y su forma incrustante ahí masiva con ramificaciones prolongadas. -
Life Histories in an Epifaunal Community: Coupling of Adult and Larval Processes Brian L
Western Washington University Masthead Logo Western CEDAR Environmental Sciences Faculty and Staff Environmental Sciences Publications 12-1992 Life Histories in an Epifaunal Community: Coupling of Adult and Larval Processes Brian L. Bingham Western Washington University, [email protected] Follow this and additional works at: https://cedar.wwu.edu/esci_facpubs Part of the Environmental Sciences Commons Recommended Citation Bingham, Brian L., "Life Histories in an Epifaunal Community: Coupling of Adult and Larval Processes" (1992). Environmental Sciences Faculty and Staff Publications. 40. https://cedar.wwu.edu/esci_facpubs/40 This Article is brought to you for free and open access by the Environmental Sciences at Western CEDAR. It has been accepted for inclusion in Environmental Sciences Faculty and Staff ubP lications by an authorized administrator of Western CEDAR. For more information, please contact [email protected]. Life Histories in an Epifaunal Community: Coupling of Adult and Larval Processes Author(s): Brian L. Bingham Source: Ecology, Vol. 73, No. 6 (Dec., 1992), pp. 2244-2259 Published by: Wiley on behalf of the Ecological Society of America Stable URL: http://www.jstor.org/stable/1941472 Accessed: 18-04-2017 15:26 UTC REFERENCES Linked references are available on JSTOR for this article: http://www.jstor.org/stable/1941472?seq=1&cid=pdf-reference#references_tab_contents You may need to log in to JSTOR to access the linked references. JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. -
The Diversity of Muscles and Their Regenerative Potential Across Animals
The Diversity of Muscles and Their Regenerative Potential across Animals Letizia Zullo, Matteo Bozzo, Alon Daya, Alessio Di Clemente, Francesco Mancini, Aram Megighian, Nir Nesher, Eric Röttinger, Tal Shomrat, Stefano Tiozzo, et al. To cite this version: Letizia Zullo, Matteo Bozzo, Alon Daya, Alessio Di Clemente, Francesco Mancini, et al.. The Diversity of Muscles and Their Regenerative Potential across Animals. Cells, MDPI, 2020, 9 (9), pp.1925. 10.3390/cells9091925. hal-02982641 HAL Id: hal-02982641 https://hal.archives-ouvertes.fr/hal-02982641 Submitted on 28 Oct 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Review The Diversity of Muscles and Their Regenerative Potential across Animals Letizia Zullo 1,2,*, Matteo Bozzo 3, Alon Daya 4, Alessio Di Clemente 1,5, Francesco Paolo Mancini 6, Aram Megighian 7,8, Nir Nesher 4, Eric Röttinger 9, Tal Shomrat 4, Stefano Tiozzo 10, Alberto Zullo 6,* and Simona Candiani 3 1 Istituto Italiano di Tecnologia, Center for Micro-BioRobotics & Center for Synaptic Neuroscience and Technology (NSYN), 16132 -
Occurrence of the Alien Ascidian Perophora Japonica at Plymouth
J. Mar. Biol. Ass. U.K. 62000), 80, 955^956 Printed in the United Kingdom Occurrence of the alien ascidian Perophora japonica at Plymouth Teruaki Nishikawa*, John D.D. BishopOP and A. Dorothea SommerfeldtO *Nagoya University Museum, Chikusa-ku, Nagoya 464-8601, Japan. OMarine Biological Association of the United Kingdom, The Laboratory, Citadel Hill, Plymouth, PL1 2PB. PCorrespondingauthor: [email protected] Several colonies of the phlebobranch ascidian Perophora japonica were found during1999 at a marina in Plymouth Sound, Devon, UK. The species was still present in the springof 2000. This appears to be the ¢rst record from British coasts of the species, which is native to Japan and Korea but is previously known from northern France. The stolons of P. japonica bear distinctive, star-shaped terminal buds, which are bright yellow in the Plymouth population. Comparison is made with Atlantic representatives of the genus, particularly the native British species P. listeri. On 8 August 1999, an unfamiliar species of ascidian was Ørnba« ck-Christie-Linde 61934) and Berrill 61950), and noticed growing on a detached fragment of hydroid 6believed con¢rmed in the Menai Strait specimens). to be Nemertesia antennina) tangled with settlement panels The conspicuous terminal buds of P. japonica, which are which had just been retrieved from Queen Anne's Battery angular and commonly star-shaped 6Figure 1), have not been Marina, Plymouth Sound, Devon, UK. The colony bore term- reported in P. listeri or any other Perophora species. The Plymouth inal structures on the stolons very reminiscent of the star- specimens of P. japonica, when alive, have a marked yellow or shaped buds of Perophora japonica Oka, 1927, familiar to greenish-yellow coloration in younger parts of the colony, while J.D.D.B. -
Studio Dei Fattori Di Crescita Coinvolti Nello Sviluppo Tissutale E Nella
Università degli Studi di Genova Dipartimento di Scienze della terra, dell’ambiente e della vita (DISTAV) Dottorato in: SCIENZE E TECNOLOGIE PER L’AMBIENTE E IL TERRITORIO (STAT) Curriculum: SCIENZE DEL MARE XXXI CICLO Dottorando: Dott. Gallus Lorenzo ssa Tutore: Prof. Scarfì Sonia Studio dei fattori di crescita coinvolti nello sviluppo tissutale e nella deposizione di matrice extracellulare del porifero Chondrosia reniformis (Nardo, 1847) con metodi immunoistochimici e di biologia molecolare. 1 “ […] alcuni animali sono stazionari e alcuni sono erratici. Gli animali stazionari si trovano nell'acqua, ma nessuna di queste creature si trova sulla terraferma. Nell'acqua ci sono molte creature che vivono in stretta adesione ad un oggetto esterno, come nel caso di diversi tipi di ostriche. E, a proposito, la spugna sembra essere dotata di una certa sensibilità: come prova di ciò si riporta che la difficoltà nel distaccarla dai suoi ormeggi aumenta se il movimento per distaccarla non viene applicato di nascosto.” (Immagine 1) Aristotele, Historia Animalium. The works of Aristotle, by Aristotle; Ross, W. D. (William David), 1877-; Smith, J. A. (John Alexander), 1863-1939. 1910-1931. Publisher Oxford : Clarendon Press Contributions to Zoology, 76 (2) 103-120 (2007) Marine invertebrate diversity in Aristotle’s zoology Eleni Voultsiadou, Dimitris Vafidis. (Immagine 1) Costantinopoli, aristotele, historia animalium e altri scritti, xii sec., pluteo 87,4.JPG https://creativecommons.org/licenses/by/3.0/legalcode https://commons.wikimedia.org/wiki/User:Sailko 2 “Nel 1847, (Giandomenico Nardo) lesse al nostro Istituto (Istituto Veneto di Scienze Lettere ed Arti, ndr), nell’adunanza del 23 marzo, un’altra Memoria (Immagine 2) intorno ad un prodotto marino da lui raccolto per la prima volta sulle coste dell’Istria fino dal 1823, e conosciuto dai pescatori sotto il nome di Carnume de mar o di Rognone di mare. -
Horizontal Gene Transfer in the Sponge Amphimedon Queenslandica
Horizontal gene transfer in the sponge Amphimedon queenslandica Simone Summer Higgie BEnvSc (Honours) A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2018 School of Biological Sciences Abstract Horizontal gene transfer (HGT) is the nonsexual transfer of genetic sequence across species boundaries. Historically, HGT has been assumed largely irrelevant to animal evolution, though widely recognised as an important evolutionary force in bacteria. From the recent boom in whole genome sequencing, many cases have emerged strongly supporting the occurrence of HGT in a wide range of animals. However, the extent, nature and mechanisms of HGT in animals remain poorly understood. Here, I explore these uncertainties using 576 HGTs previously reported in the genome of the demosponge Amphimedon queenslandica. The HGTs derive from bacterial, plant and fungal sources, contain a broad range of domain types, and many are differentially expressed throughout development. Some domains are highly enriched; phylogenetic analyses of the two largest groups, the Aspzincin_M35 and the PNP_UDP_1 domain groups, suggest that each results from one or few transfer events followed by post-transfer duplication. Their differential expression through development, and the conservation of domains and duplicates, together suggest that many of the HGT-derived genes are functioning in A. queenslandica. The largest group consists of aspzincins, a metallopeptidase found in bacteria and fungi, but not typically in animals. I detected aspzincins in representatives of all four of the sponge classes, suggesting that the original sponge aspzincin was transferred after sponges diverged from their last common ancestor with the Eumetazoa, but before the contemporary sponge classes emerged. -
DOPA-Containing Proteins in the Compound Ascidian Botryllus
ISJ 9: 1-6, 2012 ISSN 1824-307X MINIREVIEW Ascidian cytotoxic cells: state of the art and research perspectives L Ballarin Department of Biology, University of Padua, Padua, Italy Accepted January 11, 2012 Abstract Ascidian cytotoxic cells are multivacuolated cells, variable in morphology, abundantly represented in the circulation, playing important roles in ascidian immunosurveillance. Upon the recognition of foreign molecules, they are selectively recruited to the infection site where they release the content of their vacuoles. Their cytotoxic activity closely linked to the activity of the enzyme phenoloxidase (PO), a copper-containing enzyme widely distributed in invertebrates, contained inside their vacuoles together with its polyphenol substrata. Recent molecular data indicate that ascidian PO shares similarities with arthropod proPO but, unlike the latter, do not require enzymatic cleavage by extracellular serine proteinases for their activity. Possible ways of ascidian PO activation are discussed. Key Words: tunicates; ascidians; cytotoxic cells; phenoloxidase Introduction In recent years, the interest towards the best known and richest in species class of invertebrate immunity has considerably raised tunicates. Embryos give rise to free swimming driven by comparative, evolutionary and ecological tadpole-like larvae with a real notochord in their studies. Despite their relying only on innate muscular tail, ventral to the neural tube which are immunity, invertebrates are capable of complex cell- replaced, at metamorphosis, by sessile, -
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COMPOSITION AJ\JD DISTRIBLITION OF EPIFAUNA ON PROP ROOTS OF RHIZOPHORA MANGLE L. IN LAKE SURPRISE, FLORIDA by Gary L. Nickelsen A Thesis Submitted to the Faculty of the College of Science lll Partial Fulfillment of the Requirements for the Degree of ~~ster of Science Florida Atlantic University Boca Raton, Florida December 1976 (0 Copyright by Gary L. Nickelsen 1976 11 CO~WOSITION AND DISTRIBUTION OF EPIFAUNA ON PROP ROOTS OF RI-IIZOPHORA MANGLE L. IN LAKE SlffiPRISE, FLORIDA by Gary L. Nickelsen This thesis was prepared under the direction of the candidate's thesis advisor, Dr. G. Alex Marsh, and has been approved by the members of his supervisory committee. It was submitted to the faculty of the College of Science and was accepted in partial fulfillment of the requirements for the degree of Master of Science. SUPERVISORY COMMITfEE: ~~Jttw~ / - · J~~ ·/( . /// c~( ~ ~H ~ t_____., I t/ Sk~ ··m~: Dean, College of Science /97t 111 AC KNO\VLEDGB [ENTS I wish to express my appreciation to Dr. c;. Al ex Iarsh for his assistance in this study and his thorough revie~v of the manuscript . Drs. Ralph ~1. Adams and Sheldon Dobkin are also thanked for their review and criticism of the manuscript. I also \vish to thank Dr. Joseph L. Simon and Mr. Ernest D. Estevez of the University of South Florida for their genuine interest and invaluable assistance in the initial development of t his study. Dr . Manley L. Boss, who initiated several stimulating discussions of my work and offered advice and encouragement throughout this study, is gratefully acknowledged .