Synopsis of the 'Finless' Pipefish Genera (Penetopteryx, Apterygocampus and Enchelyocampus, Gen
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
A New Pipefish from Queensland
A NEW PIPEFISH FROM QUEENSLAND. By A. FRASER-BRUNNER, F.Z.S., British Museum (Natural History), and G. P. WHITLEY, F.R.Z.S., Curator of Fishes, Australian Museum. (Figures 1-2.) When drawing some types of Australian fishes in the British Museum, the senior author found a specimen of a Queensland Pipefish which did not agree with Gunther's , type (from Suez) of the species (Acentronura tentaculata) with which it had been previously ~ssociated .(Duncker, 1915; McCulloch and Whitley, 1925; Dollfus and Petit, 1938). He prepared a description and figure of the specimen, and sent them to the junior author, who studied the fish in relation to the literature and made taxonomic comparisons with its congeners. The specimen is considered to belong to a new species. Family SYNGNATHIDAE. Genus ACENTRONURA Kaup, 1853. Acentronura breviperula, sp. novo (Figure 1.) Length of head contained 2!! times in head plus trunk. Snout equal to diameter of eye, half as long as postorbital part of head. Tail about 1~ times length of combined head and trunk. Thirteen body rings; 42 tail rings, the first seven of which form the brood-pouch. Dorsal fin on 4!! rings, two of which are caudal. Dorsal rays 16; pectoral 15. Dermal filaments as shown in figure 1; larger filaments generally on each fourth ring. General characters of the genus as defined by the authors Q.uoted in the list of references below, and as figured. Figure l.-Acentronura breviperula Fraser-Brunner and Whitley. Holoty'pe from Mabuiag, Torres Strait, Queensland. A. Fraser-Brunner, del. Described and figured from the holotype, a specimen about 35 mm. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
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AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Fraser-Brunner, A., and Gilbert P. Whitley, 1949. A new pipefish from Queensland. Records of the Australian Museum 22(2): 148–150. [18 January 1949]. doi:10.3853/j.0067-1975.22.1949.595 ISSN 0067-1975 Published by the Australian Museum, Sydney nature culture discover Australian Museum science is freely accessible online at http://publications.australianmuseum.net.au 6 College Street, Sydney NSW 2010, Australia A NEW PIPEFISH FROM QUEENSLAND. By A. FRASER-BRUNNER, F.Z.S., British Museum (Natural History), and G. P. WHITLEY, F.R.Z.S., Curator of Fishes, Australian Museum. (Figures 1-2.) When drawing some types of Australian fishes in the British Museum, the senior author found a specimen of a Queensland Pipefish which did not agree with Gunther's , type (from Suez) of the species (Acentronura tentaculata) with which it had been previously ~ssociated .(Duncker, 1915; McCulloch and Whitley, 1925; Dollfus and Petit, 1938). He prepared a description and figure of the specimen, and sent them to the junior author, who studied the fish in relation to the literature and made taxonomic comparisons with its congeners. The specimen is considered to belong to a new species. Family SYNGNATHIDAE. Genus ACENTRONURA Kaup, 1853. Acentronura breviperula, sp. novo (Figure 1.) Length of head contained 2!! times in head plus trunk. Snout equal to diameter of eye, half as long as postorbital part of head. Tail about 1~ times length of combined head and trunk. Thirteen body rings; 42 tail rings, the first seven of which form the brood-pouch. Dorsal fin on 4!! rings, two of which are caudal. -
Reproductive Biology of the Opossum Pipefish, Microphis Brachyurus Lineatus, in Tecolutla Estuary, Veracruz, Mexico
Gulf and Caribbean Research Volume 16 Issue 1 January 2004 Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico Martha Edith Miranda-Marure Universidad Nacional Autonoma de Mexico Jose Antonio Martinez-Perez Universidad Nacional Autonoma de Mexico Nancy J. Brown-Peterson University of Southern Mississippi, [email protected] Follow this and additional works at: https://aquila.usm.edu/gcr Part of the Marine Biology Commons Recommended Citation Miranda-Marure, M. E., J. A. Martinez-Perez and N. J. Brown-Peterson. 2004. Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico. Gulf and Caribbean Research 16 (1): 101-108. Retrieved from https://aquila.usm.edu/gcr/vol16/iss1/17 DOI: https://doi.org/10.18785/gcr.1601.17 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf and Caribbean Research by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Gulf and Caribbean Research Vol 16, 101–108, 2004 Manuscript received September 25, 2003; accepted December 12, 2003 REPRODUCTIVE BIOLOGY OF THE OPOSSUM PIPEFISH, MICROPHIS BRACHYURUS LINEATUS, IN TECOLUTLA ESTUARY, VERACRUZ, MEXICO Martha Edith Miranda-Marure, José Antonio Martínez-Pérez, and Nancy J. Brown-Peterson1 Laboratorio de Zoología, Universidad Nacional Autónoma de México, Facultad de Estudios Superiores Iztacala. Av., de los Barrios No.1, Los Reyes Iztacala, Tlalnepantla, Estado de México, C.P. 05490 Mexico 1Department of Coastal Sciences, The University of Southern Mississippi, 703 East Beach Drive, Ocean Springs, MS 39564 USA ABSTRACT The reproductive biology of the opossum pipefish, Microphis brachyurus lineatus, was investigated in Tecolutla estuary, Veracruz, Mexico, to determine sex ratio, size at maturity, gonadal and brood pouch histology, reproductive seasonality, and fecundity of this little-known syngnathid. -
Order GASTEROSTEIFORMES PEGASIDAE Eurypegasus Draconis
click for previous page 2262 Bony Fishes Order GASTEROSTEIFORMES PEGASIDAE Seamoths (seadragons) by T.W. Pietsch and W.A. Palsson iagnostic characters: Small fishes (to 18 cm total length); body depressed, completely encased in Dfused dermal plates; tail encircled by 8 to 14 laterally articulating, or fused, bony rings. Nasal bones elongate, fused, forming a rostrum; mouth inferior. Gill opening restricted to a small hole on dorsolat- eral surface behind head. Spinous dorsal fin absent; soft dorsal and anal fins each with 5 rays, placed posteriorly on body. Caudal fin with 8 unbranched rays. Pectoral fins large, wing-like, inserted horizon- tally, composed of 9 to 19 unbranched, soft or spinous-soft rays; pectoral-fin rays interconnected by broad, transparent membranes. Pelvic fins thoracic, tentacle-like,withI spine and 2 or 3 unbranched soft rays. Colour: in life highly variable, apparently capable of rapid colour change to match substrata; head and body light to dark brown, olive-brown, reddish brown, or almost black, with dorsal and lateral surfaces usually darker than ventral surface; dorsal and lateral body surface often with fine, dark brown reticulations or mottled lines, sometimes with irregular white or yellow blotches; tail rings often encircled with dark brown bands; pectoral fins with broad white outer margin and small brown spots forming irregular, longitudinal bands; unpaired fins with small brown spots in irregular rows. dorsal view lateral view Habitat, biology, and fisheries: Benthic, found on sand, gravel, shell-rubble, or muddy bottoms. Collected incidentally by seine, trawl, dredge, or shrimp nets; postlarvae have been taken at surface lights at night. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
(Teleostei: Syngnathidae: Hippocampinae) from The
Disponible en ligne sur www.sciencedirect.com Annales de Paléontologie 98 (2012) 131–151 Original article The first known fossil record of pygmy pipehorses (Teleostei: Syngnathidae: Hippocampinae) from the Miocene Coprolitic Horizon, Tunjice Hills, Slovenia La première découverte de fossiles d’hippocampes « pygmy pipehorses » (Teleostei : Syngnathidae : Hippocampinae) de l’Horizon Coprolithique du Miocène des collines de Tunjice, Slovénie a,∗ b Jure Zaloharˇ , Tomazˇ Hitij a Department of Geology, Faculty of Natural Sciences and Engineering, University of Ljubljana, Aˇskerˇceva 12, SI-1000 Ljubljana, Slovenia b Dental School, Faculty of Medicine, University of Ljubljana, Hrvatski trg 6, SI-1000 Ljubljana, Slovenia Available online 27 March 2012 Abstract The first known fossil record of pygmy pipehorses is described. The fossils were collected in the Middle Miocene (Sarmatian) beds of the Coprolitic Horizon in the Tunjice Hills, Slovenia. They belong to a new genus and species Hippotropiscis frenki, which was similar to the extant representatives of Acentronura, Amphelikturus, Idiotropiscis, and Kyonemichthys genera. Hippotropiscis frenki lived among seagrasses and macroalgae and probably also on a mud and silt bottom in the temperate shallow coastal waters of the western part of the Central Paratethys Sea. The high coronet on the head, the ridge system and the high angle at which the head is angled ventrad indicate that Hippotropiscis is most related to Idiotropiscis and Hippocampus (seahorses) and probably separated from the main seahorse lineage later than Idiotropiscis. © 2012 Elsevier Masson SAS. All rights reserved. Keywords: Seahorses; Slovenia; Coprolitic Horizon; Sarmatian; Miocene Résumé L’article décrit la première découverte connue de fossiles d’hippocampes « pygmy pipehorses ». Les fos- siles ont été trouvés dans les plages du Miocène moyen (Sarmatien) de l’horizon coprolithique dans les collines de Tunjice, en Slovénie. -
The Rise of Seahorses
Just like seahorses, they have a prehen - sile tail that they use to hold onto vege - tation, a tough exoskeleton consisting of bony rings, and fused jaws used to suck in small prey items. Like male seahorses, their males have a brood pouch in which they fertilise the eggs they collect from the females and in which they then brood their young. There is only one major difference – they do not swim upright. Aptly named “pygmy pipehorses” to Seahorses are the only bony fishes that permanently swim upright. Photo: Robert Harcourt reflect that they look like a cross between a pipefish and a seahorse, the significance of these small fishes as a surviving evolu - tionary link between pipefishes and seahorses has largely been overlooked. The pygmy pipehorses themselves can The Rise of be divided into two major groups that seem to reflect different stages of evolu - tion on the way to the seahorse. One occurs in the Indo-West Pacific (genus Seahorses Acentronura ) and the Caribbean (genus Amphelikturus ), and its species look like BY PETER TESKE and LUCIANO BEHEREGARAY short pipefishes. The other group (Idiotropiscis ) has so far only been found in temperate Australian waters and, with Genetic data indicate that tectonic changes in Australasia and the the exception of an upright posture, its associated formation of vast seagrass meadows may have driven three species resemble seahorses to even the evolution of upright posture in seahorses. the tiniest detail, even having a distinct neck region and a coronet (the crest or eahorses (genus Hippocampus) are transitional forms, suggesting that keel that seahorses have on top of their unique among the bony fishes as seahorses must have evolved earlier. -
Trade in Seahorses and Other Syngnathids in Countries Outside Asia (1998-2001)
ISSN 1198-6727 Fisheries Centre Research Reports 2011 Volume 19 Number 1 Trade in seahorses and other syngnathids in countries outside Asia (1998-2001) Fisheries Centre, University of British Columbia, Canada Trade in seahorses and other syngnathids in countries outside Asia (1998-2001) 1 Edited by Amanda C.J. Vincent, Brian G. Giles, Christina A. Czembor and Sarah J. Foster Fisheries Centre Research Reports 19(1) 181 pages © published 2011 by The Fisheries Centre, University of British Columbia 2202 Main Mall Vancouver, B.C., Canada, V6T 1Z4 ISSN 1198-6727 1 Cite as: Vincent, A.C.J., Giles, B.G., Czembor, C.A., and Foster, S.J. (eds). 2011. Trade in seahorses and other syngnathids in countries outside Asia (1998-2001). Fisheries Centre Research Reports 19(1). Fisheries Centre, University of British Columbia [ISSN 1198-6727]. Fisheries Centre Research Reports 19(1) 2011 Trade in seahorses and other syngnathids in countries outside Asia (1998-2001) edited by Amanda C.J. Vincent, Brian G. Giles, Christina A. Czembor and Sarah J. Foster CONTENTS DIRECTOR ’S FOREWORD ......................................................................................................................................... 1 EXECUTIVE SUMMARY ............................................................................................................................................. 2 Introduction ..................................................................................................................................................... 2 Methods ...........................................................................................................................................................