The Limnology of Two Dissimilar Subarctic Streams and Implications of Resource Development
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												Genomanalyse Von Prodiamesa Olivacea
Genomanalyse von Prodiamesa olivacea Dissertation zur Erlangung des Grades Doktor der Naturwissenschaften (Dr. rer. nat.) am Fachbereich Biologie der Johannes Gutenberg-Universität in Mainz Sarah Brunck geb. 08.08.1987 in Mainz Mainz, 2016 Dekan: 1. Berichterstatter: 2. Berichterstatter: Tag der mündlichen Prüfung: ii Inhaltsverzeichnis Inhaltsverzeichnis ................................................................................................................................ iii 1 Einleitung ........................................................................................................................................... 1 1.1 Die Familie der Chironomiden ................................................................................................. 1 1.1.1 Die Gattung Chironomus ..................................................................................................... 3 1.1.2 Die Gattung Prodiamesa ....................................................................................................... 6 1.2 Die Struktur von Insekten-Genomen am Beispiel der Chironomiden ............................... 9 1.2.1 Hochrepetitive DNA-Sequenzen ..................................................................................... 11 1.2.2 Mittelrepetitive DNA-Sequenzen bzw. Gen-Familien ................................................. 13 1.2.3 Gene und genregulatorische Sequenzen ........................................................................ 17 1.3 Zielsetzung ............................................................................................................................... - 
												
												Chironomidae Hirschkopf
Literatur Chironomidae Gesäuse U.A. zur Bestimmung und Ermittlung der Autökologie herangezogene Literatur: Albu, P. (1972): Două specii de Chironomide noi pentru ştiinţă în masivul Retezat.- St. şi Cerc. Biol., Seria Zoologie, 24: 15-20. Andersen, T.; Mendes, H.F. (2002): Neotropical and Mexican Mesosmittia Brundin, with the description of four new species (Insecta, Diptera, Chironomidae).- Spixiana, 25(2): 141-155. Andersen, T.; Sæther, O.A. (1993): Lerheimia, a new genus of Orthocladiinae from Africa (Diptera: Chironomidae).- Spixiana, 16: 105-112. Andersen, T.; Sæther, O.A.; Mendes, H.F. (2010): Neotropical Allocladius Kieffer, 1913 and Pseudosmittia Edwards, 1932 (Diptera: Chironomidae).- Zootaxa, 2472: 1-77. Baranov, V.A. (2011): New and rare species of Orthocladiinae (Diptera, Chironomidae) from the Crimea, Ukraine.- Vestnik zoologii, 45(5): 405-410. Boggero, A.; Zaupa, S.; Rossaro, B. (2014): Pseudosmittia fabioi sp. n., a new species from Sardinia (Diptera: Chironomidae, Orthocladiinae).- Journal of Entomological and Acarological Research, [S.l.],46(1): 1-5. Brundin, L. (1947): Zur Kenntnis der schwedischen Chironomiden.- Arkiv för Zoologi, 39 A(3): 1- 95. Brundin, L. (1956): Zur Systematik der Orthocladiinae (Dipt. Chironomidae).- Rep. Inst. Freshwat. Drottningholm 37: 5-185. Casas, J.J.; Laville, H. (1990): Micropsectra seguyi, n. sp. du groupe attenuata Reiss (Diptera: Chironomidae) de la Sierra Nevada (Espagne).- Annls Soc. ent. Fr. (N.S.), 26(3): 421-425. Caspers, N. (1983): Chironomiden-Emergenz zweier Lunzer Bäche, 1972.- Arch. Hydrobiol. Suppl. 65: 484-549. Caspers, N. (1987): Chaetocladius insolitus sp. n. (Diptera: Chironomidae) from Lunz, Austria. In: Saether, O.A. (Ed.): A conspectus of contemporary studies in Chironomidae (Diptera). - 
												
												Ohio EPA Macroinvertebrate Taxonomic Level December 2019 1 Table 1. Current Taxonomic Keys and the Level of Taxonomy Routinely U
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Table 1. Current taxonomic keys and the level of taxonomy routinely used by the Ohio EPA in streams and rivers for various macroinvertebrate taxonomic classifications. Genera that are reasonably considered to be monotypic in Ohio are also listed. Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Species Pennak 1989, Thorp & Rogers 2016 Porifera If no gemmules are present identify to family (Spongillidae). Genus Thorp & Rogers 2016 Cnidaria monotypic genera: Cordylophora caspia and Craspedacusta sowerbii Platyhelminthes Class (Turbellaria) Thorp & Rogers 2016 Nemertea Phylum (Nemertea) Thorp & Rogers 2016 Phylum (Nematomorpha) Thorp & Rogers 2016 Nematomorpha Paragordius varius monotypic genus Thorp & Rogers 2016 Genus Thorp & Rogers 2016 Ectoprocta monotypic genera: Cristatella mucedo, Hyalinella punctata, Lophopodella carteri, Paludicella articulata, Pectinatella magnifica, Pottsiella erecta Entoprocta Urnatella gracilis monotypic genus Thorp & Rogers 2016 Polychaeta Class (Polychaeta) Thorp & Rogers 2016 Annelida Oligochaeta Subclass (Oligochaeta) Thorp & Rogers 2016 Hirudinida Species Klemm 1982, Klemm et al. 2015 Anostraca Species Thorp & Rogers 2016 Species (Lynceus Laevicaudata Thorp & Rogers 2016 brachyurus) Spinicaudata Genus Thorp & Rogers 2016 Williams 1972, Thorp & Rogers Isopoda Genus 2016 Holsinger 1972, Thorp & Rogers Amphipoda Genus 2016 Gammaridae: Gammarus Species Holsinger 1972 Crustacea monotypic genera: Apocorophium lacustre, Echinogammarus ischnus, Synurella dentata Species (Taphromysis Mysida Thorp & Rogers 2016 louisianae) Crocker & Barr 1968; Jezerinac 1993, 1995; Jezerinac & Thoma 1984; Taylor 2000; Thoma et al. Cambaridae Species 2005; Thoma & Stocker 2009; Crandall & De Grave 2017; Glon et al. 2018 Species (Palaemon Pennak 1989, Palaemonidae kadiakensis) Thorp & Rogers 2016 1 Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Informal grouping of the Arachnida Hydrachnidia Smith 2001 water mites Genus Morse et al. - 
												
												Awenda Provincial Park
AWENDA PROVINCIAL PARK One Malaise trap was deployed at Awenda Provincial Park in 2014 (44.82534, -79.98458, 231m ASL; Figure 1). This trap collected arthropods for twenty weeks from April 29 – September 19, 2014. All 10 Malaise trap samples were processed; every other sample was analyzed using the individual specimen protocol while the second half was analyzed via bulk analysis. A total of 3029 BINs were obtained. Over half the BINs captured were flies (Diptera), followed by bees, ants and wasps (Hymenoptera), moths and butterflies (Lepidoptera), and true bugs (Hemiptera; Figure 2). In total, 595 arthropod species were named, representing 21.3% of the BINs from the Figure 1. Malaise trap deployed at Awenda Provincial site (Appendix 1). All the BINs were assigned at least Park in 2014. to family, and 54% were assigned to a genus (Appendix 2). Specimens collected from Awenda represent 214 different families and 705 genera. Diptera Hymenoptera Lepidoptera Hemiptera Coleoptera Trombidiformes Sarcoptiformes Psocodea Mesostigmata Araneae Entomobryomorpha Mecoptera Symphypleona Trichoptera Neuroptera Thysanoptera Dermaptera Pseudoscorpiones Stylommatophora Odonata Opiliones Orthoptera Figure 2. Taxonomy breakdown of BINs captured in the Malaise trap at Awenda. APPENDIX 1. TAXONOMY REPORT Class Order Family Genus Species Arachnida Araneae Agelenidae Agelenopsis Clubionidae Clubiona Clubiona kastoni Dictynidae Emblyna Emblyna sublata Linyphiidae Ceraticelus Ceraticelus atriceps Ceraticelus fissiceps Ceratinella Ceratinella brunnea Ceratinops - 
												
												Checklist of the Family Chironomidae (Diptera) of Finland
A peer-reviewed open-access journal ZooKeys 441: 63–90 (2014)Checklist of the family Chironomidae (Diptera) of Finland 63 doi: 10.3897/zookeys.441.7461 CHECKLIST www.zookeys.org Launched to accelerate biodiversity research Checklist of the family Chironomidae (Diptera) of Finland Lauri Paasivirta1 1 Ruuhikoskenkatu 17 B 5, FI-24240 Salo, Finland Corresponding author: Lauri Paasivirta ([email protected]) Academic editor: J. Kahanpää | Received 10 March 2014 | Accepted 26 August 2014 | Published 19 September 2014 http://zoobank.org/F3343ED1-AE2C-43B4-9BA1-029B5EC32763 Citation: Paasivirta L (2014) Checklist of the family Chironomidae (Diptera) of Finland. In: Kahanpää J, Salmela J (Eds) Checklist of the Diptera of Finland. ZooKeys 441: 63–90. doi: 10.3897/zookeys.441.7461 Abstract A checklist of the family Chironomidae (Diptera) recorded from Finland is presented. Keywords Finland, Chironomidae, species list, biodiversity, faunistics Introduction There are supposedly at least 15 000 species of chironomid midges in the world (Armitage et al. 1995, but see Pape et al. 2011) making it the largest family among the aquatic insects. The European chironomid fauna consists of 1262 species (Sæther and Spies 2013). In Finland, 780 species can be found, of which 37 are still undescribed (Paasivirta 2012). The species checklist written by B. Lindeberg on 23.10.1979 (Hackman 1980) included 409 chironomid species. Twenty of those species have been removed from the checklist due to various reasons. The total number of species increased in the 1980s to 570, mainly due to the identification work by me and J. Tuiskunen (Bergman and Jansson 1983, Tuiskunen and Lindeberg 1986). - 
												
												Table of Contents 2
Southwest Association of Freshwater Invertebrate Taxonomists (SAFIT) List of Freshwater Macroinvertebrate Taxa from California and Adjacent States including Standard Taxonomic Effort Levels 1 March 2011 Austin Brady Richards and D. Christopher Rogers Table of Contents 2 1.0 Introduction 4 1.1 Acknowledgments 5 2.0 Standard Taxonomic Effort 5 2.1 Rules for Developing a Standard Taxonomic Effort Document 5 2.2 Changes from the Previous Version 6 2.3 The SAFIT Standard Taxonomic List 6 3.0 Methods and Materials 7 3.1 Habitat information 7 3.2 Geographic Scope 7 3.3 Abbreviations used in the STE List 8 3.4 Life Stage Terminology 8 4.0 Rare, Threatened and Endangered Species 8 5.0 Literature Cited 9 Appendix I. The SAFIT Standard Taxonomic Effort List 10 Phylum Silicea 11 Phylum Cnidaria 12 Phylum Platyhelminthes 14 Phylum Nemertea 15 Phylum Nemata 16 Phylum Nematomorpha 17 Phylum Entoprocta 18 Phylum Ectoprocta 19 Phylum Mollusca 20 Phylum Annelida 32 Class Hirudinea Class Branchiobdella Class Polychaeta Class Oligochaeta Phylum Arthropoda Subphylum Chelicerata, Subclass Acari 35 Subphylum Crustacea 47 Subphylum Hexapoda Class Collembola 69 Class Insecta Order Ephemeroptera 71 Order Odonata 95 Order Plecoptera 112 Order Hemiptera 126 Order Megaloptera 139 Order Neuroptera 141 Order Trichoptera 143 Order Lepidoptera 165 2 Order Coleoptera 167 Order Diptera 219 3 1.0 Introduction The Southwest Association of Freshwater Invertebrate Taxonomists (SAFIT) is charged through its charter to develop standardized levels for the taxonomic identification of aquatic macroinvertebrates in support of bioassessment. This document defines the standard levels of taxonomic effort (STE) for bioassessment data compatible with the Surface Water Ambient Monitoring Program (SWAMP) bioassessment protocols (Ode, 2007) or similar procedures. - 
												
												Insecta Diptera) in Freshwater (Excluding Simulidae, Culicidae, Chironomidae, Tipulidae and Tabanidae) Rüdiger Wagner University of Kassel
Entomology Publications Entomology 2008 Global diversity of dipteran families (Insecta Diptera) in freshwater (excluding Simulidae, Culicidae, Chironomidae, Tipulidae and Tabanidae) Rüdiger Wagner University of Kassel Miroslav Barták Czech University of Agriculture Art Borkent Salmon Arm Gregory W. Courtney Iowa State University, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/ent_pubs BoudewPart ofijn the GoBddeeiodivrisersity Commons, Biology Commons, Entomology Commons, and the TRoyerarle Bestrlgiialan a Indnstit Aquaute of Nticat uErcaol Scienlogyce Cs ommons TheSee nex tompc page forle addte bitioniblaiol agruthorapshic information for this item can be found at http://lib.dr.iastate.edu/ ent_pubs/41. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Book Chapter is brought to you for free and open access by the Entomology at Iowa State University Digital Repository. It has been accepted for inclusion in Entomology Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Global diversity of dipteran families (Insecta Diptera) in freshwater (excluding Simulidae, Culicidae, Chironomidae, Tipulidae and Tabanidae) Abstract Today’s knowledge of worldwide species diversity of 19 families of aquatic Diptera in Continental Waters is presented. Nevertheless, we have to face for certain in most groups a restricted knowledge about distribution, ecology and systematic, - 
												
												Biological Assessment of the Patapsco River Tributary Watersheds, Howard County, Maryland
Biological Assessment of the Patapsco River Tributary Watersheds, Howard County, Maryland Spring 2003 Index Period and Summary of Round One County- Wide Assessment Patuxtent River April, 2005 Final Report UT to Patuxtent River Biological Assessment of the Patapsco River Tributary Watersheds, Howard County, Maryland Spring 2003 Index Period and Summary of Round One County-wide Assessment Prepared for: Howard County, Maryland Department of Public Works Stormwater Management Division 6751 Columbia Gateway Dr., Ste. 514 Columbia, MD 21046-3143 Prepared by: Tetra Tech, Inc. 400 Red Brook Blvd., Ste. 200 Owings Mills, MD 21117 Acknowledgement The principal authors of this report are Kristen L. Pavlik and James B. Stribling, both of Tetra Tech. They were also assisted by Erik W. Leppo. This document reports results from three of the six subwatersheds sampled during the Spring Index Period of the third year of biomonitoring by the Howard County Stormwater Management Division. Fieldwork was conducted by Tetra Tech staff including Kristen Pavlik, Colin Hill, David Bressler, Jennifer Pitt, and Amanda Richardson. All laboratory sample processing was conducted by Carolina Gallardo, Shabaan Fundi, Curt Kleinsorg, Chad Bogues, Joey Rizzo, Elizabeth Yarborough, Jessica Garrish, Chris Hines, and Sara Waddell. Taxonomic identification was completed by Dr. R. Deedee Kathman and Todd Askegaard; Aquatic Resources Center (ARC). Hunt Loftin, Linda Shook, and Brenda Decker (Tetra Tech) assisted with budget tracking and clerical support. This work was completed under the Howard County Purchase Order L 5305 to Tetra Tech, Inc. The enthusiasm and interest of the staff in the Stormwater Management Division, including Howard Saltzman and Angela Morales is acknowledged and appreciated. - 
												
												DNA Barcoding
Full-time PhD studies of Ecology and Environmental Protection Piotr Gadawski Species diversity and origin of non-biting midges (Chironomidae) from a geologically young lake PhD Thesis and its old spring system Performed in Department of Invertebrate Zoology and Hydrobiology in Institute of Ecology and Environmental Protection Różnorodność gatunkowa i pochodzenie fauny Supervisor: ochotkowatych (Chironomidae) z geologicznie Prof. dr hab. Michał Grabowski młodego jeziora i starego systemu źródlisk Auxiliary supervisor: Dr. Matteo Montagna, Assoc. Prof. Łódź, 2020 Łódź, 2020 Table of contents Acknowledgements ..........................................................................................................3 Summary ...........................................................................................................................4 General introduction .........................................................................................................6 Skadar Lake ...................................................................................................................7 Chironomidae ..............................................................................................................10 Species concept and integrative taxonomy .................................................................12 DNA barcoding ...........................................................................................................14 Chapter I. First insight into the diversity and ecology of non-biting midges (Diptera: Chironomidae) - 
												
												Lancs & Ches Muscidae & Fanniidae
The Diptera of Lancashire and Cheshire: Muscoidea, Part I by Phil Brighton 32, Wadeson Way, Croft, Warrington WA3 7JS [email protected] Version 1.0 21 December 2020 Summary This report provides a new regional checklist for the Diptera families Muscidae and Fannidae. Together with the families Anthomyiidae and Scathophagidae these constitute the superfamily Muscoidea. Overall statistics on recording activity are given by decade and hectad. Checklists are presented for each of the three Watsonian vice-counties 58, 59, and 60 detailing for each species the number of occurrences and the year of earliest and most recent record. A combined checklist showing distribution by the three vice-counties is also included, covering a total of 241 species, amounting to 68% of the current British checklist. Biodiversity metrics have been used to compare the pre-1970 and post-1970 data both in terms of the overall number of species and significant declines or increases in individual species. The Appendix reviews the national and regional conservation status of species is also discussed. Introduction manageable group for this latest regional review. Fonseca (1968) still provides the main This report is the fifth in a series of reviews of the identification resource for the British Fanniidae, diptera records for Lancashire and Cheshire. but for the Muscidae most species are covered by Previous reviews have covered craneflies and the keys and species descriptions in Gregor et al winter gnats (Brighton, 2017a), soldierflies and (2002). There have been many taxonomic changes allies (Brighton, 2017b), the family Sepsidae in the Muscidae which have rendered many of the (Brighton, 2017c) and most recently that part of names used by Fonseca obsolete, and in some the superfamily Empidoidea formerly regarded as cases erroneous. - 
												
												CHIRONOMUS NEWSLETTER on CHIRONOMIDAE RESEARCH Co-Editors: Ruth CONTRERAS-LICHTENBERG Naturhistorisches Museum Wien, Burgring 7, A-1014 WIEN, Austria Peter H
CHIRONOMUS NEWSLETTER ON CHIRONOMIDAE RESEARCH Co-Editors: Ruth CONTRERAS-LICHTENBERG Naturhistorisches Museum Wien, Burgring 7, A-1014 WIEN, Austria Peter H. LANGTON 5 Kylebeg Avenue, Mountsandel, Coleraine, Co. Londonderry, Northern Ireland, BT52 1JN - Northern Ireland Bibliography: Odwin HOFFRICHTER Institut f. Biologie I, Albert-Ludwigs-Universität Freiburg, Hauptstrasse 1 D-79104 , Germany Treasurer: Trond ANDERSEN: Museum of Zoology, University of Bergen, Museplass 3, N-5007 Bergen - Norway ISSN 0172-1941 No. 13 September 2000 CONTENTS Chironomid Work in Munich to Continue ............................................................................................................... 1 New curator at the Zoologische Staatssammlung Munich ...................................................................................... 2 Contributions in SPIXIANA in Memory of Dr. Reiss.............................................................................................. 4 To Iya Kiknadze at 70................................................................................................................................................ 5 Current Research ....................................................................................................................................................... 7 Short – Communications ......................................................................................................................................... 19 Notice Board ................................................................................................................................... - 
												
												Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS.