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Phylogenetic Analyses of Juniperus Species in Turkey and Their Relations with Other Juniperus Based on Cpdna Supervisor: Prof
MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY AYSUN DEMET GÜVENDİREN IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY APRIL 2015 Approval of the thesis MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA submitted by AYSUN DEMET GÜVENDİREN in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Department of Biological Sciences, Middle East Technical University by, Prof. Dr. Gülbin Dural Ünver Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Orhan Adalı Head of the Department, Biological Sciences Prof. Dr. Zeki Kaya Supervisor, Dept. of Biological Sciences METU Examining Committee Members Prof. Dr. Musa Doğan Dept. Biological Sciences, METU Prof. Dr. Zeki Kaya Dept. Biological Sciences, METU Prof.Dr. Hayri Duman Biology Dept., Gazi University Prof. Dr. İrfan Kandemir Biology Dept., Ankara University Assoc. Prof. Dr. Sertaç Önde Dept. Biological Sciences, METU Date: iii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all material and results that are not original to this work. Name, Last name : Aysun Demet GÜVENDİREN Signature : iv ABSTRACT MOLECULAR PHYLOGENETIC ANALYSES OF JUNIPERUS L. SPECIES IN TURKEY AND THEIR RELATIONS WITH OTHER JUNIPERS BASED ON cpDNA Güvendiren, Aysun Demet Ph.D., Department of Biological Sciences Supervisor: Prof. -
Wa Shan – Emei Shan, a Further Comparison
photograph © Zhang Lin A rare view of Wa Shan almost minus its shroud of mist, viewed from the Abies fabri forested slopes of Emei Shan. At its far left the mist-filled Dadu River gorge drops to 500-600m. To its right the 3048m high peak of Mao Kou Shan climbed by Ernest Wilson on 3 July 1903. “As seen from the top of Mount Omei, it resembles a huge Noah’s Ark, broadside on, perched high up amongst the clouds” (Wilson 1913, describing Wa Shan floating in the proverbial ‘sea of clouds’). Wa Shan – Emei Shan, a further comparison CHRIS CALLAGHAN of the Australian Bicentennial Arboretum 72 updates his woody plants comparison of Wa Shan and its sister mountain, World Heritage-listed Emei Shan, finding Wa Shan to be deserving of recognition as one of the planet’s top hotspots for biological diversity. The founding fathers of modern day botany in China all trained at western institutions in Europe and America during the early decades of last century. In particular, a number of these eminent Chinese botanists, Qian Songshu (Prof. S. S. Chien), Hu Xiansu (Dr H. H. Hu of Metasequoia fame), Chen Huanyong (Prof. W. Y. Chun, lead author of Cathaya argyrophylla), Zhong Xinxuan (Prof. H. H. Chung) and Prof. Yung Chen, undertook their training at various institutions at Harvard University between 1916 and 1926 before returning home to estab- lish the initial Chinese botanical research institutions, initiate botanical exploration and create the earliest botanical gardens of China (Li 1944). It is not too much to expect that at least some of them would have had personal encounters with Ernest ‘Chinese’ Wilson who was stationed at the Arnold Arboretum of Harvard between 1910 and 1930 for the final 20 years of his life. -
Identification Key to the Cypress Family (Cupressaceae)1
Feddes Repertorium 116 (2005) 1–2, 96–146 DOI: 10.1002/fedr.200411062 Weinheim, Mai 2005 Ruhr-Universität Bochum, Lehrstuhl für Spezielle Botanik, Bochum C. SCHULZ; P. KNOPF & TH. STÜTZEL Identification key to the Cypress family (Cupressaceae)1 With 11 Figures Summary Zusammenfassung The identification of Cupressaceae taxa, except for Bestimmungsschlüssel für die Familie der Cup- some local and easily distinguishable taxa, is diffi- ressaceae cult even for specialists. One reason for this is the lack of a complete key including all Cupressaceae Die Bestimmung von Cupressaceae-Taxa ist mit taxa, another reason is that diagnoses and descrip- Ausnahme einiger lokaler und leicht bestimmbarer tions are spread over several hundred publications Taxa schwierig, selbst für Spezialisten. Ein Grund, which are sometimes difficult to access. Based on warum es noch keinen vollständigen Bestimmungs- morphological studies of about 3/4 of the species and schlüssel mit allen Cupressaceae-Taxa gibt ist, dass a careful compilation of the most important descrip- die Sippen-Beschreibungen sich auf mehrere hundert tions of Cupressaceae, a first identification key for Publikationen verteilen, welche teilweise schwierig the entire Cypress family (Cupressaceae) could be zu beschaffen sind. Etwa 3/4 der Cupressaceae-Ar- set up. The key comprises any of the 30 genera, 134 ten wurden morphologisch untersucht und die wich- species, 7 subspecies, 38 varieties, one form and thus tigsten Beschreibungen zusammengefasst, daraus all 180 taxa recognized by FARJON (2001). The key wurde dann der erste vollständige Bestimmungs- uses mainly features of adult leaves, female cones schlüssel für Cupressaceae erstellt. Der Bestim- and other characters which are all relatively easy to mungsschlüssel enthält 30 Gattungen, 134 Arten, be used. -
Juniperus Bibliography by Workform
Juniperus Bibliography by Workform Record Number: 2110 Author, Analytic: Abdullah-Al-Refai//El-Kateb, H//Stimm, B//Mosandl, R Author Role: Author Affiliation: Article Title: Quality and germination of seeds of Juniperus excelsa M.-Bieb. in the Kalamoun mountains, Syria. Medium Designator: Connective Phrase: Author, Monographic: Author Role: Journal Title: Forstliche Forschungsberichte Munchen Reprint Status: Date of Publication: 2003 Volume Identification: 192 Issue Identification: Page(s): Address/Availability: Lehrstuhl fur Waldbau und Forsteinrichtung, TU Munchen, Germany Location/URL: CODEN: ISSN: 0174-1810 Notes: Abstract: Juniperus excelsa is the main tree species of forest stands in the upper elevations of the Kalamoun mountains in Syria. In this preliminary experiment seeds of juniper from four stands in different elevations (1900, 2100, 2200, 2250 m) were subjected to two pre-treatments with different duration period: warm stratification for three-months followed by 45 days warm stratification followed by 45 days cold stratification, and six months with 90 days warm followed by 90 days cold stratification. In comparison to the other three stands, the stand 2100 above sea level had more vigorous trees from which the seeds were collected. After stratification, seed samples were subjected to a standard germination test according to ISTA regulations. Juniper seeds originating from the Kalamoun mountains showed with 92.5% a high percentage of empty seeds. The better quality of seeds with less empty seeds (87%) were found in the stand which included the more vigorous juniper trees in 2100 m above sea level. Germination of seeds was significantly dependant on the duration period of the warm and cold stratification. -
Juniperus Subject Bibliography by Keywords
Juniperus Subject Bibliography by Keywords Juniperus (201) 1. Admasu E.; Thirgood S. J.; Bekele A., and Karen Laurenson M. Spatial ecology of golden jackal in farmland in the Ethiopian Highlands. African Journal of Ecology. 2004; 42(2):144-152. Keywords: Juniperus/ jackal/ Canis aureus/ Ethiopia Abstract: The spatial ecology of golden jackal Canis aureus was studied on farmland adjacent to the Bale Mountains National Park in southern Ethiopia during 1998-2000. Three adult and four subadult jackals were captured in leghold traps and radiotagged. The range size of the adult jackals varied from 7.9 to 48.2 km<sup>2</sup> and the subadults from 24.2 to 64.8 km<sup>2</sup>. These ranges are the largest recorded for this species. Range overlap of the tagged jackals averaged 54%, which, in conjunction with observations of associations between individuals, suggested that all the tagged jackals belonged to one social group. Tagged jackals were observed alone on 87% of occasions despite the extensive overlap in individual ranges. Pairs consisting of a male and female were the most commonly observed group and larger groups were seen on only five occasions. Jackals in this population appeared less gregarious than observed elsewhere. The jackals used all the habitats available to them, particularly at night when they foraged in Artemesia and Hypericum bush and farmland. During the day they were more frequently found in Hagenia and Juniper woodland and their diurnal resting sites were characterized by thick cover. This is the first detailed study of golden jackals in a human- modified landscape in Africa and further demonstrates the flexibility in behaviour and ecology exhibited by this species throughout its range. -
And the Impact on Mouth-Feel and Aroma Distilling
Still Waters run deep Vapour, Vacuum and Pot – and the impact on mouth-feel and aroma Distilling Techniques with Sam Carter and David T Smith SCIENCE AND NATURE. HOW CHEMICAL ANALYSIS CAN HELP GIN DISTILLERS TO ENSURE BOTANICAL QUALITY, CONTROL AND ASSURANCE. HENRIC MOLIN FOUNDER AND OWNER SPIRIT OF HVEN SAFETY UALITY Q CONSISTENCY LANDED COST MOST GIN ALL GIN MANY GIN CORIANDER WATER ANGELICA CITRUS ETHANOL CASSIA BARK JUNIPER CARDAMOM CHAMOMILE LIQUORICE ORRIS ROOT KINGDOM DIVISION CLASS ORDER FAMILY PLANTAE PINOPHYTA PINOPSIDA PINALES CUPRESSACEAE JUNIPERUS JUNIPERUS JUNIPERUS SABINAS (NEW WORLD) JUNIPERUS SABINAS (OLD WORLD) NEEDLE-LEAF JUNIPERS SCALE-LEAF JUNIPERS SCALE-LEAF JUNIPERS GENUS JUNIPERUS ANGOSTURANA JUNIPERUS CHINENSIS JUNIPERUS JUNIPERUS COMMUNIS JUNIPERUS ASHEI JUNIPERUS CONVALLIUM JUNIPERUS ARIZONICA JUNIPERUS EXCELSA COMMON JUNIPER JUNIPERUS BARBADENSIS JUNIPERUS EXCELSA JUNIPERUS CONFERTA JUNIPERUS BERMUDIANA JUNIPERUS FOETIDISSIMA SHORE JUNIPER JUNIPERUS BLANCOI JUNIPERUS INDICA JUNIPERUS RIGIDA JUNIPERUS CALIFORNICA JUNIPERUS KOMAROVII JUNIPERUS COAHUILENSIS JUNIPERUS PHOENICEA SPECIES TEMPLE JUNIPER JUNIPERUS COMITANA JUNIPERUS PINGII ~67 VARIETIES JUNIPERUS OXYCEDRUS JUNIPERUS DEPPEANA JUNIPERUS PROCERA JUNIPERUS BREVIFOLIA JUNIPERUS DURANGENSIS JUNIPERUS PROCUMBENS JUNIPERUS CEDRUS JUNIPERUS FLACCIDA JUNIPERUS PSEUDOSABINA JUNIPERUS DELTOIDES JUNIPERUS GAMBOANA JUNIPERUS RECURVA JUNIPERUS HORIZONTALIS JUNIPERUS SABINA JUNIPERUS FORMOSANA JUNIPERUS JALISCANA JUNIPERUS SALTUARIA JUNIPERUS LUTCHUENSIS JUNIPERUS -
附录I 《中国植物志》、 Flora of China和the Plant List中存在的问题案例
附录 I 《中国植物志》、Flora of China和The Plant List中存在的问题案例 Appendix I Cases of problems found in Flora Reipublicae Popularis Sinicae, Flora of China, and The Plant List by means of comparison 科名 种或种下 分类群 名称 原始文献 页码 日期 简评 Family Specific or infraspecific name Literature Collation Year Brief comments Araucariaceae Araucaria cunninghamii Aiton ex D. Don Descr. Pinus, ed. 2 3: t.79 1837 FRPS 和 FOC 中 鉴定错误, 应为Araucaria colummaris (J.R. Forster) Hooker Araucariaceae Dammara alba Rumph. ex Hassk. Tijdschr. Natuurl. Gesch. 9: 179 1842 FOC记载的 作者Rumphius 为ex Blume, 但是 未提 供文献出, 处 Physiol. 无法核对 Cephalotaxaceae Cephalotaxus fortunei var. globosa S.Y. Hu Taiwania 10: 28 1964 TPL有一 个 重复项, 由空格 造成 Cephalotaxaceae Cephalotaxus fortunei var. lanceolata (K.M. Feng Phytologia 68: 27 1990 FOC基本名 的作 者引证错, 应为(K.M. Feng 误ex W.C. Cheng ex C.Y. Cheng, W.C. Cheng & al) Silba & al.) Silba, TPL中作者也 错误; 诚静容在 《中国 植物志》 中负 责倪藤类 ; 三 尖 杉属的作 者是郑, 这在 万钧、 傅立国 和 赵奇僧 《中国植 物志》 中有记载 Cephalotaxaceae Cephalotaxus lanceolata K.M. Feng ex W.C. Acta Phytotax. Sin. 13(4): 86 1975 FOC中作者 引证, Cephalotaxus 不准确 lanceolata K.M. Feng in Cheng & al. W. C. Cheng & al., Acta Phytotax. Sin. 13(4): 86. 1975., 应该是 K. M. Feng ex Cheng & al., TPL正确 Cephalotaxaceae Cephalotaxus sinensis (Rehder & E.H. Wilson) Lloydia 16: 162 1954 FOC记载 年代1953年 为, 应为1954年。参Contributions 考“ to H.L.Li Botany by Hui-Lin Li, Ph.D.” Cephalotaxaceae Cephalotaxus wilsoniana Hayata Icon. Pl. Formosan. 4: 22 1914 FOC记载 分子 结果C. 建议harringtonii 处理的一个变 为 , 但 种 在 FOC 中仍记Cephalotaxus 载为 sinensis var. -
Endemic Juniperus Montane Species Facing Extinction Risk Under Climate Change in Southwest China: Integrative Approach for Conservation Assessment and Prioritization
biology Article Endemic Juniperus Montane Species Facing Extinction Risk under Climate Change in Southwest China: Integrative Approach for Conservation Assessment and Prioritization Mohammed A. Dakhil 1,2,3,* , Marwa Waseem A. Halmy 4,* , Walaa A. Hassan 5, Ali El-Keblawy 6 , Kaiwen Pan 2 and Mohamed Abdelaal 7 1 Botany and Microbiology Department, Faculty of Science, Helwan University, Cairo 11790, Egypt 2 CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; [email protected] 3 University of Chinese Academy of Sciences, Beijing 100039, China 4 Department of Environmental Sciences, Faculty of Science, Alexandria University, Alexandria 21511, Egypt 5 Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh P. O. Box 84428, Saudi Arabia; [email protected] 6 Department of Applied Biology, Faculty of Science, University of Sharjah, Sharjah P. O. Box 27272, UAE; [email protected] 7 Department of Botany, Faculty of Science, Mansoura University, Mansoura 35516, Egypt; [email protected] * Correspondence: [email protected] (M.A.D.); [email protected] (M.W.A.H.) Simple Summary: Climate change is one of the most significant drivers of habitat loss and species Citation: Dakhil, M.A.; Halmy, extinction, particularly montane endemic species such as Juniper trees, which are restricted to unique M.W.A.; Hassan, W.A.; El-Keblawy, habitats. Therefore, assessing the impact of climate change on the extinction risk of species is a A.; Pan, K.; Abdelaal, M. -
Molecular Phylogeny and Evolution of Host-Plant Use in Conifer Seed Chalcids in the Genus Megastigmus (Hymenoptera: Torymidae)
Systematic Entomology (2005), 31, 47–64 DOI: 10.1111/j.1365-3113.2005.00310.x Molecular phylogeny and evolution of host-plant use in conifer seed chalcids in the genus Megastigmus (Hymenoptera: Torymidae) MARIE-ANNE AUGER-ROZENBERG1 , CAROLE KERDELHUE´1, *, EMMANUELLE MAGNOUX1 , JEAN TURGEON2 , JEAN-YVES RASPLUS3 andALAIN ROQUES1 1INRA, Unite´de Zoologie Forestie` re, Ardon, Olivet, France, 2Natural Resources Canada – Canadian Forest Service, Great Lakes Forestry Centre, Ontario, Canada and 3INRA, CBGP, Campus International de Baillarguet, Montferrier-sur-Lez cedex, France Abstract. Phylogenetic relationships amongst Megastigmus species (Chalcidoidea: Torymidae) associated with conifer seeds were inferred from DNA sequence data. Twenty-nine species of seed chalcids were analysed using two different genes, cytochrome b (mitochondrial DNA) and the D2 domain of the 28S ribosomal DNA. Maximum-parsimony and maximum-likelihood analyses showed that taxa formed two monophyletic groups, one clade comprising all species associated with Cupressaceae and Taxodiaceae hosts with the exception of Chamaecyparis,andthe other clade composed of species associated with Pinaceae. Species infesting Cupressaceae and Taxodiaceae seemed to be specialized to particular host genera or even to be species specific, which was consistent with a taxonomic radiation following initial host adaptation. By contrast, Megastigmus species associated with Pinaceae appeared capable of shifting onto different congeneric species or even onto a new host genus, with their evolution apparently less constrained by plant association. We hypothesized that the Megastigmus groupassociatedwithPinaceaemay have a much higher invasive potential than that related to Cupressaceae. The study also confirmed the presence of invasive Nearctic species in the Palaearctic, and demonstrated the existence of a cryptic species complex. -
Zum Problem Der Eiszeitlichen Waldrefugien Und Zur Geschichte Des Menschlichen Eingriffs in Den Haushalt Der Natur Ost- Und Ze
Vegetationsgeschichtliche Untersuchung zur Geschichte des menschlichen Eingriffs in den Haushalt der Natur Ost-, Zentral-Tibets und West-Sichuans, sowie zum Problem der eiszeitlichen Waldrefugien Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Fakultät Naturwissenschaften Universität Hohenheim Institut für Botanik vorgelegt von Sonja Bettina Adamczyk aus Esslingen a.N. 2009 II Dekan: Prof. Dr. Heinz Breer 1. berichtende Person: Prof. Dr. Manfred Küppers 2. berichtende Person: Prof. Dr. Achim Bräuning Eingereicht am: 25. November 2009 Mündliche Prüfung am: 23. September 2010 Die vorliegende Arbeit wurde am 24. Juni 2010 von der Fakultät Naturwissenschaften der Universität Hohenheim als „Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften“ angenommen. III Danksagung Mein ganz besonderer Dank für die Themenübergabe und die während der Arbeiten außerordentlich gute Betreuung gilt Herrn Prof. Dr. Dr. h.c. Burkhard Frenzel, Institut für Botanik der Universität Hohenheim, der leider während der Endphase des Promotionsverfahrens nach Abgabe der Dissertation verstarb. Sehr wertvoll waren unsere vielen Gespräche und Diskussionen, die nicht nur zum Gelingen dieses Vorhabens beigetragen haben. Des Weiteren danke ich für seinen Einsatz zur Ermöglichung der Probendatierung, die für die Interpretation der pollenanalytischen Ergebnisse absolut notwendig waren. Besonderer Dank gilt seinen Bemühungen zur Beschaffung von Drittmitteln, sowie seiner Unterstützung durch Übersetzungen, Informationen und Bereitstellung -
Polyploidy in Gymnosperms-A Reappraisal
22 Deepak Ohri . Silvae Genetica (2021) 70, 22 - 38 Polyploidy in Gymnosperms-A Reappraisal Deepak Ohri Research Cell, Amity University Uttar Pradesh, Lucknow Campus, Malhaur, (Near Railway Station), P.O. Chinhat, Luck- now-226028, U.P., India, E-mail: [email protected] Abstract paleopolyploidies in the geological past (Bowers et al., 2003, Blanc and Wolfe 2004, Cui et al., 2006, Fawcett et al. 2009, Recent polyploidy in gymnosperms is unusually scarce being Paterson et al. 2009, Soltis et al. 2009, International Brachypo- present in only 9.80 % of the 714 taxa studied cytologically. dium Initiative 2010, Jiao et al. 2011, 2014, Amborella Genome Polyploid forms are represented by sporadic seedlings and Project 2013, Van der Peer et al. 2017, Leebens-Mack et al. 2019, individual trees, intraspecific polyploidy in cultivation or in Wu et al. 2020) resulting in a burst of adaptive radiation and wild and entirely polyploid species and genera. Polyploidy high level of biodiversity represented by estimated 3,52,000 shows a non-random distribution in different genera being species (The Angiosperm Phylogeny Group 2009). Furthermo- mostly prevalent in Ephedra and Juniperus, besides the classic re, a large number of crop and ornamental species are of poly- examples of Sequoia and Fitzroya. Remarkably, both Ephedra ploid origin which again underlines the significance of poly- and Juniperus show adaptive radiation by interspecific hybridi- ploidy in their evolution and domestication (Reney-Byfield and zation followed by polyploidy while in Ginkgo viable polyploid Wendel 2014, Khoshoo 1979, Ohri 2013, Salman-Minkov et al cytotypes are found in cultivation. Induced polyploidy has not 2016).