Perlecan Expression Influences the Keratin 15-Positive Cell Population Fate in the Epidermis of Aging Skin

Total Page:16

File Type:pdf, Size:1020Kb

Perlecan Expression Influences the Keratin 15-Positive Cell Population Fate in the Epidermis of Aging Skin Perlecan expression influences the keratin 15-positive cell population fate in the epidermis of aging skin Morgan dos Santos, Anna Michopoulou, Valérie André-frei, Sophie Boulesteix, Christine Guicher, Guila Dayan, John Whitelock, Odile Damour, Patricia Rousselle To cite this version: Morgan dos Santos, Anna Michopoulou, Valérie André-frei, Sophie Boulesteix, Christine Guicher, et al.. Perlecan expression influences the keratin 15-positive cell population fate in the epidermis ofaging skin. Aging, Impact Journals, 2016, 8 (4), pp.751-768. 10.18632/aging.100928. hal-03041948 HAL Id: hal-03041948 https://hal.archives-ouvertes.fr/hal-03041948 Submitted on 5 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. www.impactaging.com AGING, April 2016, Vol 8 No 4 Research Paper Perlecan expression influences the keratin 15‐positive cell population fate in the epidermis of aging skin Morgan Dos Santos1,2,*, Anna Michopoulou1,*, Valérie André‐Frei2, Sophie Boulesteix1, Christine 1 1 3 1,4 1 Guicher , Guila Dayan , John Whitelock , Odile Damour , and Patricia Rousselle 1Laboratoire de Biologie Tissulaire et Ingénierie Thérapeutique, UMR 5305, CNRS, University Lyon 1, Lyon, France 2 BASF BCS France SAS, 69366, Lyon, France 3 Graduate School of Biomedical Engineering, University of New South Wales Sydney, Australia 4 Cell and Tissue Bank, Hôpital Edouard Herriot, Lyon, France *Equally contributed to this work Key words: basement membrane; perlecan; keratinocyte; skin aging; keratin 15, stem cell A bbreviations: DEJ, dermal‐epidermal junction; ECM, extracellular matrix; BM, basement membrane; HSPG, heparan sulfate p roteoglycan; NHK, normal human keratinocytes; SE, skin equivalent; DE, dermal equivalent Received: 01/13/16; Accepted: 02/23/16; Published: 03/17/16 Correspondence to: Patricia Rousselle, PhD; E‐mail: [email protected] Copyright: Dos Santos et al. This is an open‐access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Abstract: The epidermis is continuously renewed by stem cell proliferation and differentiation. Basal keratinocytes append the dermal‐epidermal junction, a cell surface‐associated, extracellular matrix that provides structural support and influences their behaviour. It consists of laminins, type IV collagen, nidogens, and perlecan, which are necessary for tissue organization and structural integrity. Perlecan is a heparan sulfate proteoglycan known to be involved in keratinocyte survival and differentiation. Aging affects the dermal epidermal junction resulting in decreased contact with keratinocytes, thus impacting epidermal renewal and homeostasis. We found that perlecan expression decreased during chronological skin aging. Our in vitro studies revealed reduced perlecan transcript levels in aged keratinocytes. The production of in vitro skin models revealed that aged keratinocytes formed a thin and poorly organized epidermis. Supplementing these models with purified perlecan reversed the phenomenon allowing restoration of a well‐differentiated multi‐layered epithelium. Perlecan down‐regulation in cultured keratinocytes caused depletion of the cell population that expressed keratin 15. This phenomenon depended on the perlecan heparan sulphate moieties, which suggested the involvement of a growth factor. Finally, we found defects in keratin 15 expression in the epidermis of aging skin. This study highlighted a new role for perlecan in maintaining the self‐renewal capacity of basal keratinocytes. INTRODUCTION leave the basal layer and move upward toward the surface, where they die and slough off [1]. Basal Skin constitutes the protective barrier of the body and keratinocytes append the DEJ, a cell surface-associated mediates its interaction with the environment. A highly extracellular matrix that forms as a concerted action of specialized extracellular matrix (ECM) named dermal both epidermal and dermal cells [2]. The DEJ provides epidermal junction (DEJ) separates the epidermal and both a structural support to keratinocytes and a specific dermal compartments. The epidermis, primarily made niche that mediates signals influencing their behaviour. of keratinocytes, is continuously renewed by the Similar to all basement membranes (BMs), the DEJ proliferation of stem cells and the differentiation of their primarily consists of laminins, type IV collagen, progeny, which undergo terminal differentiation as they nidogens, and the heparan sulfate proteoglycan (HSPG) www.impactaging.com 751 AGING, April 2016, Vol. 8 No.4 perlecan, all of which are necessary for tissue from young and elderly donors confirmed earlier studies organization and structural integrity. Keratinocytes showing that perlecan influences epidermal thickness committed to the differentiation program downregulate [10]. Finally, we found that perlecan down-regulation in integrins to become less adhesive, move to the keratinocytes resulted in the depletion of the cell suprabasal compartment and continue their upward population that expressed keratin 15 and ß1-integrin. movement until they are terminally differentiated and This depletion was reversed when we supplemented shed off. This produces several layers of keratinocytes, perlecan-deficient keratinocytes with purified perlecan. at different stages of differentiation that can be identified by the expression of keratins. Basal RESULTS keratinocytes express keratins (K) 5, K14 and K15, whereas differentiating keratinocytes express keratins Perlecan expression in epidermal and capillary BMs K1 and K10 [3]. in skin aging The appearance and mechanical functions of skin We performed an immunohistochemical analysis of undergo profound changes over time with both perlecan in a cohort of 38 human skin samples from increasing chronological age and cumulative exposure donors ranging in age from 22 to 73 years. We detected to external factors, such as ultraviolet radiation [4]. In perlecan expression with a monoclonal antibody (mAb) addition to an overall thinning of the epidermis and against perlecan domain III (Figure 1a). An analysis of dermis, a major change is the flattening of the DEJ the biopsies from donors that were 22 to 35 years old resulting from retraction of both epidermal papillae and revealed continuous staining at the DEJ and around microprojections of basal cells into the dermis [5,6]. In dermal capillaries (Figure 1b and c), consistent with genetically programmed aging, the progressive decrease previous studies [16,17]. Perlecan staining began to in epidermal cell renewal results from decreased decrease in biopsies from donors aged 39 to 50 years. proliferation [7,8] and the appearance of senescent Perlecan staining again decreased in both intensity and keratinocytes [9]. area in biopsies from donors aged 54 to 70 years (Figure 1b and d). This was also observed in the capillary BMs In addition to their function in the promotion of strong (Figure 1c and e). An analysis of perlecan domains I, epidermal/dermal attachment, DEJ components play IV, and V revealed that all domains were expressed crucial roles in biological events, including the along the DEJ and around dermal capillaries, similar to adhesion, migration, proliferation and differentiation of the domain III expression pattern (Figure 1f). In aged keratinocytes [2]. In particular, perlecan was shown to skin, both the DEJ and dermal capillary BM showed play a role in keratinocyte survival and terminal reduced staining of each domain; this result suggested differentiation [10] and in DEJ cohesion [11]. Perlecan that the entire perlecan molecule was subject to is a modular HSPG with broad tissue distribution and expression changes over time. multiple functions [12]. The 470-kDa perlecan core protein is made of five distinct modules, but together To characterize the perlecan expression pattern in with several O-linked oligosaccharides and heparan cultured keratinocytes, we first examined its sulfate chains, the protein can reach a molecular mass of localization in the ECM of young keratinocyte cultures over 800 kDa (Figure 1a). The various protein modules (Figure 2a). When the anti-perlecan mAb was applied to of perlecan and its heparan sulfate chains take part in confluent cells, the protein appeared to be regularly numerous interactions with partners, including growth distributed over the entire support, which suggested that factors, BM constituents such as laminin-111 or -511 perlecan was present in the underlying ECM. At the and collagen IV, as well as ß1 integrins [13,14]. Though individual cell level, we observed that the substrate both epidermal keratinocytes and dermal fibroblasts immediately adjacent to the cells was fluorescently express perlecan at the transcriptional level, DEJ stained in regularly aligned patches, resembling associated perlecan seems to be produced by adhesion contacts. Higher magnification revealed that keratinocytes [10,15]. the ends of actin cables
Recommended publications
  • Development and Maintenance of Epidermal Stem Cells in Skin Adnexa
    International Journal of Molecular Sciences Review Development and Maintenance of Epidermal Stem Cells in Skin Adnexa Jaroslav Mokry * and Rishikaysh Pisal Medical Faculty, Charles University, 500 03 Hradec Kralove, Czech Republic; [email protected] * Correspondence: [email protected] Received: 30 October 2020; Accepted: 18 December 2020; Published: 20 December 2020 Abstract: The skin surface is modified by numerous appendages. These structures arise from epithelial stem cells (SCs) through the induction of epidermal placodes as a result of local signalling interplay with mesenchymal cells based on the Wnt–(Dkk4)–Eda–Shh cascade. Slight modifications of the cascade, with the participation of antagonistic signalling, decide whether multipotent epidermal SCs develop in interfollicular epidermis, scales, hair/feather follicles, nails or skin glands. This review describes the roles of epidermal SCs in the development of skin adnexa and interfollicular epidermis, as well as their maintenance. Each skin structure arises from distinct pools of epidermal SCs that are harboured in specific but different niches that control SC behaviour. Such relationships explain differences in marker and gene expression patterns between particular SC subsets. The activity of well-compartmentalized epidermal SCs is orchestrated with that of other skin cells not only along the hair cycle but also in the course of skin regeneration following injury. This review highlights several membrane markers, cytoplasmic proteins and transcription factors associated with epidermal SCs. Keywords: stem cell; epidermal placode; skin adnexa; signalling; hair pigmentation; markers; keratins 1. Epidermal Stem Cells as Units of Development 1.1. Development of the Epidermis and Placode Formation The embryonic skin at very early stages of development is covered by a surface ectoderm that is a precursor to the epidermis and its multiple derivatives.
    [Show full text]
  • Hypomesus Transpacificus
    Aquatic Toxicology 105 (2011) 369–377 Contents lists available at ScienceDirect Aquatic Toxicology jou rnal homepage: www.elsevier.com/locate/aquatox Sublethal responses to ammonia exposure in the endangered delta smelt; Hypomesus transpacificus (Fam. Osmeridae) ∗ 1 2 Richard E. Connon , Linda A. Deanovic, Erika B. Fritsch, Leandro S. D’Abronzo , Inge Werner Aquatic Toxicology Laboratory, Department of Anatomy, Physiology and Cell Biology, School of Veterinary Medicine, University of California, Davis, California 95616, United States a r t i c l e i n f o a b s t r a c t Article history: The delta smelt (Hypomesus transpacificus) is an endangered pelagic fish species endemic to the Received 9 May 2011 Sacramento-San Joaquin Estuary in Northern California, which acts as an indicator of ecosystem health Received in revised form 29 June 2011 in its habitat range. Interrogative tools are required to successfully monitor effects of contaminants upon Accepted 2 July 2011 the delta smelt, and to research potential causes of population decline in this species. We used microarray technology to investigate genome-wide effects in fish exposed to ammonia; one of multiple contami- Keywords: nants arising from wastewater treatment plants and agricultural runoff. A 4-day exposure of 57-day Hypomesus transpacificus + old juveniles resulted in a total ammonium (NH4 –N) median lethal concentration (LC50) of 13 mg/L, Delta smelt ␮ Microarray and a corresponding un-ionized ammonia (NH3) LC50 of 147 g/L. Using the previously designed delta + Biomarker smelt microarray we assessed altered gene transcription in juveniles exposed to 10 mg/L NH4 –N from Ammonia this 4-day exposure.
    [Show full text]
  • Structural and Biochemical Changes Underlying a Keratoderma-Like Phenotype in Mice Lacking Suprabasal AP1 Transcription Factor Function
    Citation: Cell Death and Disease (2015) 6, e1647; doi:10.1038/cddis.2015.21 OPEN & 2015 Macmillan Publishers Limited All rights reserved 2041-4889/15 www.nature.com/cddis Structural and biochemical changes underlying a keratoderma-like phenotype in mice lacking suprabasal AP1 transcription factor function EA Rorke*,1, G Adhikary2, CA Young2, RH Rice3, PM Elias4, D Crumrine4, J Meyer4, M Blumenberg5 and RL Eckert2,6,7,8 Epidermal keratinocyte differentiation on the body surface is a carefully choreographed process that leads to assembly of a barrier that is essential for life. Perturbation of keratinocyte differentiation leads to disease. Activator protein 1 (AP1) transcription factors are key controllers of this process. We have shown that inhibiting AP1 transcription factor activity in the suprabasal murine epidermis, by expression of dominant-negative c-jun (TAM67), produces a phenotype type that resembles human keratoderma. However, little is understood regarding the structural and molecular changes that drive this phenotype. In the present study we show that TAM67-positive epidermis displays altered cornified envelope, filaggrin-type keratohyalin granule, keratin filament, desmosome formation and lamellar body secretion leading to reduced barrier integrity. To understand the molecular changes underlying this process, we performed proteomic and RNA array analysis. Proteomic study of the corneocyte cross-linked proteome reveals a reduction in incorporation of cutaneous keratins, filaggrin, filaggrin2, late cornified envelope precursor proteins, hair keratins and hair keratin-associated proteins. This is coupled with increased incorporation of desmosome linker, small proline-rich, S100, transglutaminase and inflammation-associated proteins. Incorporation of most cutaneous keratins (Krt1, Krt5 and Krt10) is reduced, but incorporation of hyperproliferation-associated epidermal keratins (Krt6a, Krt6b and Krt16) is increased.
    [Show full text]
  • Quantigene Flowrna Probe Sets Currently Available
    QuantiGene FlowRNA Probe Sets Currently Available Accession No. Species Symbol Gene Name Catalog No. NM_003452 Human ZNF189 zinc finger protein 189 VA1-10009 NM_000057 Human BLM Bloom syndrome VA1-10010 NM_005269 Human GLI glioma-associated oncogene homolog (zinc finger protein) VA1-10011 NM_002614 Human PDZK1 PDZ domain containing 1 VA1-10015 NM_003225 Human TFF1 Trefoil factor 1 (breast cancer, estrogen-inducible sequence expressed in) VA1-10016 NM_002276 Human KRT19 keratin 19 VA1-10022 NM_002659 Human PLAUR plasminogen activator, urokinase receptor VA1-10025 NM_017669 Human ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like VA1-10029 NM_017699 Human SIDT1 SID1 transmembrane family, member 1 VA1-10032 NM_000077 Human CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) VA1-10040 NM_003150 Human STAT3 signal transducer and activator of transcripton 3 (acute-phase response factor) VA1-10046 NM_004707 Human ATG12 ATG12 autophagy related 12 homolog (S. cerevisiae) VA1-10047 NM_000737 Human CGB chorionic gonadotropin, beta polypeptide VA1-10048 NM_001017420 Human ESCO2 establishment of cohesion 1 homolog 2 (S. cerevisiae) VA1-10050 NM_197978 Human HEMGN hemogen VA1-10051 NM_001738 Human CA1 Carbonic anhydrase I VA1-10052 NM_000184 Human HBG2 Hemoglobin, gamma G VA1-10053 NM_005330 Human HBE1 Hemoglobin, epsilon 1 VA1-10054 NR_003367 Human PVT1 Pvt1 oncogene homolog (mouse) VA1-10061 NM_000454 Human SOD1 Superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))
    [Show full text]
  • 140503 IPF Signatures Supplement Withfigs Thorax
    Supplementary material for Heterogeneous gene expression signatures correspond to distinct lung pathologies and biomarkers of disease severity in idiopathic pulmonary fibrosis Daryle J. DePianto1*, Sanjay Chandriani1⌘*, Alexander R. Abbas1, Guiquan Jia1, Elsa N. N’Diaye1, Patrick Caplazi1, Steven E. Kauder1, Sabyasachi Biswas1, Satyajit K. Karnik1#, Connie Ha1, Zora Modrusan1, Michael A. Matthay2, Jasleen Kukreja3, Harold R. Collard2, Jackson G. Egen1, Paul J. Wolters2§, and Joseph R. Arron1§ 1Genentech Research and Early Development, South San Francisco, CA 2Department of Medicine, University of California, San Francisco, CA 3Department of Surgery, University of California, San Francisco, CA ⌘Current address: Novartis Institutes for Biomedical Research, Emeryville, CA. #Current address: Gilead Sciences, Foster City, CA. *DJD and SC contributed equally to this manuscript §PJW and JRA co-directed this project Address correspondence to Paul J. Wolters, MD University of California, San Francisco Department of Medicine Box 0111 San Francisco, CA 94143-0111 [email protected] or Joseph R. Arron, MD, PhD Genentech, Inc. MS 231C 1 DNA Way South San Francisco, CA 94080 [email protected] 1 METHODS Human lung tissue samples Tissues were obtained at UCSF from clinical samples from IPF patients at the time of biopsy or lung transplantation. All patients were seen at UCSF and the diagnosis of IPF was established through multidisciplinary review of clinical, radiological, and pathological data according to criteria established by the consensus classification of the American Thoracic Society (ATS) and European Respiratory Society (ERS), Japanese Respiratory Society (JRS), and the Latin American Thoracic Association (ALAT) (ref. 5 in main text). Non-diseased normal lung tissues were procured from lungs not used by the Northern California Transplant Donor Network.
    [Show full text]
  • The Correlation of Keratin Expression with In-Vitro Epithelial Cell Line Differentiation
    The correlation of keratin expression with in-vitro epithelial cell line differentiation Deeqo Aden Thesis submitted to the University of London for Degree of Master of Philosophy (MPhil) Supervisors: Professor Ian. C. Mackenzie Professor Farida Fortune Centre for Clinical and Diagnostic Oral Science Barts and The London School of Medicine and Dentistry Queen Mary, University of London 2009 Contents Content pages ……………………………………………………………………......2 Abstract………………………………………………………………………….........6 Acknowledgements and Declaration……………………………………………...…7 List of Figures…………………………………………………………………………8 List of Tables………………………………………………………………………...12 Abbreviations….………………………………………………………………..…...14 Chapter 1: Literature review 16 1.1 Structure and function of the Oral Mucosa……………..…………….…..............17 1.2 Maintenance of the oral cavity...……………………………………….................20 1.2.1 Environmental Factors which damage the Oral Mucosa………. ….…………..21 1.3 Structure and function of the Oral Mucosa ………………...….……….………...21 1.3.1 Skin Barrier Formation………………………………………………….……...22 1.4 Comparison of Oral Mucosa and Skin…………………………………….……...24 1.5 Developmental and Experimental Models used in Oral mucosa and Skin...……..28 1.6 Keratinocytes…………………………………………………….….....................29 1.6.1 Desmosomes…………………………………………….…...............................29 1.6.2 Hemidesmosomes……………………………………….…...............................30 1.6.3 Tight Junctions………………………….……………….…...............................32 1.6.4 Gap Junctions………………………….……………….….................................32
    [Show full text]
  • Identification of Genes Involved in Regulatory Mechanism of Pigments in Broiler Chickens
    Identification of genes involved in regulatory mechanism of pigments in broiler chickens T.M. Tarique1,2, S. Yang1, Z. Mohsina1, J. Qiu1, Z. Yan1, G. Chen1 and A. Chen1 1State Key Laboratory of Agro-Product Quality and Safety, Institute of Quality Standards and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing, China 2Department of Agricultural Sciences, Faculty of Sciences, Allama Iqbal Open University, Islamabad, Pakistan Corresponding authors: T.M. Tarique / S.M. Yang E-mail: [email protected] / [email protected] Genet. Mol. Res. 13 (3): 7201-7216 (2014) Received January 2, 2014 Accepted May 15, 2014 Published September 5, 2014 DOI http://dx.doi.org/10.4238/2014.September.5.6 ABSTRACT. Chicken is an important model organism that unites the evolutionary gap between mammals and other vertebrates and provide major source of protein from meat and eggs for all over the world population. However, specific genes underlying the regulatory mechanism of broiler pigmentation have not yet been determined. In order to better understand the genes involved in the mechanism of pigmentation in the muscle tissues of broilers, the Affymetrix microarray hybridization experiment platform was used to identify gene expression profiles at 7 weeks of age. Broilers fed canthaxanthin, natural lutein, and orangeII pigments (100 mg/kg) were used to explore gene expression profiles). Our data showed that the 7th week of age was a very important phase with regard to gene expression profiles. We identified a number of differentially expressed genes; in canthaxanthin, natural lutein, and orangeII, there were 54 (32 upregulated and 22 downregulated), 23 (15 upregulated and 8 downregulated), and 7 (5 upregulated and 2 downregulated) known genes, respectively.
    [Show full text]
  • Product Data Sheet Purified Anti-Neurofilament H (NF-H)
    Version: 2 Revision Date: 2015-10-26 Product Data Sheet Purified anti-Neurofilament H (NF-H) Catalog # / Size: 822601 / 50 µl Previously: Covance Catalog# PCK-592P Clone: Poly28226 Isotype: Chicken IgY Immunogen: This antibody was raised in chickens against purified bovine Neurofilament H. Reactivity: Human, Rat, Mouse, Cat, Chicken Preparation: The antibody was purified by affinity chromatography. Formulation: Phosphate-buffered solution, pH 7.2, containing 10 mM sodium azide. Concentration: Lot-specific (please contact technical support for concentration and total µg amount) Storage: The antibody solution should be stored undiluted between 2°C and 8°C. Please note the storage condition for this antibody has been changed Rat hippocampus stained with rabbit from -20°C to between 2°C and 8°C. You can also check your vial or your anti-GFAP (red, AF568) and chicken CoA to find the most accurate storage condition for this antibody. anti-Neurofilament H (green, AF488). Photo courtesy of Molecular Applications: Expressions. Applications: WB, IF Recommended Usage: Each lot of this antibody is quality control tested by Western blotting. The optimal working dilution should be determined for each specific assay condition. • WB: 1:1,000,000* • IF: 1:100,000 Application Notes: This antibody is effective in immunoblotting (WB) and immunofluorescence (IF). This antibody does not bind to protein A or protein G. * Predicted MW = 200-220 kD Description: Neurofilaments (NF) are ~10 nanometer intermediate filaments found in neurons. They are a major component of the neuronal cytoskeleton, and function primarily to provide structural support for the axon and regulate axon diameter. Neurofilaments belong to the same protein family as the intermediate filaments of other tissues such as keratins, which make the filaments expressed in epithelia.
    [Show full text]
  • Taqman Probes ARF 5' Primer P16ink4a 5' Primer Exon 1/2
    a b Exon 1β 1α 23 ARF p16INK4a MDM2 Cyclin D CDK4/6 p53 pRB TaqMan Probes ARF 5’ Primer p16INK4a 5’ Primer Exon 1/2 Common Primer Exon 2/3 Common Primers Defective p53 Intact p53 A. Melanoma cell lines clustered by expression of p53 targets and INK4a/ARF expression. The p53 response to ionizing radiation is indicated. Top cluster: Cells with intact p53 response show increased expression of the eight indicated p53 targets, and decreased expression of ARF. Bottom cluster: TaqMan and microarray results for the p16INK4- and ARF- specific transcripts. Cell lines that demonstrated increased p16INK4a expression either harbored RB deletion, p16INK4a point 2 mutation or CDK4 point mutation (Supp Table 1). Pair-wise variances (r ) for the log2 transformed CDKN2a microarray 2 2 2 results versus the log10 transformed TaqMan results are: vs. Exon 2/3 r =0.78; vs. Exon1α/2 r =0.32; vs. Exon 1β/2 r =0.38. Note all four WT lines (PMWK, Mel505, SKMEL187 and RPMI8322) lack evidence of p53 function by all assays. B. The INK4a/ARF locus and with TaqMan strategies. The ARF transcript originates from exon 1β while the p16INK4a transcript originates from exon 1α. Both transcripts splice to exon 2 but in alternate reading frames. ARF stabilizes p53 by inhibiting MDM2, while p16INK4a activates RB by inhibiting CDK4. Primers and TaqMan probes are shown for the real-time RT-PCR strategy. Shields et al., Supp Figure 1 SKMEL 28 U01 24h SKMEL WM2664 U01 48h WM2664 U01 24h 24 U01 48h SKMEL 24 U01 24h SKMEL 24 Untreated SKMEL 24 DMSO 48h SKMEL 24 DMSO 24h SKMEL WM2664 DMSO 24h WM2664 DMSO 48h WM2644 Untreated 28 Untreated SKMEL 28 DMSO 48h SKMEL 28 DMSO 24h SKMEL -3.00 -2.00 -1.00 0.00 1.00 2.00 3.00 relative to median expression Genes decreased by UO1 (863) HIF1A Hypoxia-inducible factor 1, alpha subunit NM_001530 RBBP8 Retinoblastoma binding protein 8 NM_002894 Homo sapiens, clone IMAGE:4337652, mRNA BC018676 EIF4EBP1 Eukaryotic translation initiation factor 4E binding protein EXOSC8 Exosome component 8 NM_181503 ENST00000321524 MCM7 MCM7 minichromosome maintenance deficient 7 (S.
    [Show full text]
  • Transcriptome Profiling and Differential Gene Expression In
    G C A T T A C G G C A T genes Article Transcriptome Profiling and Differential Gene Expression in Canine Microdissected Anagen and Telogen Hair Follicles and Interfollicular Epidermis Dominique J. Wiener 1,* ,Kátia R. Groch 1 , Magdalena A.T. Brunner 2,3, Tosso Leeb 2,3 , Vidhya Jagannathan 2 and Monika M. Welle 3,4 1 Department of Veterinary Pathobiology, College of Veterinary Medicine & Biomedical Science, Texas A&M University, College Station, TX 77843, USA; [email protected] 2 Institute of Genetics, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland; [email protected] (M.A.T.B.); [email protected] (T.L.); [email protected] (V.J.) 3 Dermfocus, Vetsuisse Faculty, University Hospital of Bern, 3010 Bern, Switzerland; [email protected] 4 Institute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland * Correspondence: [email protected]; Tel.: +1-979-862-1568 Received: 30 June 2020; Accepted: 3 August 2020; Published: 4 August 2020 Abstract: The transcriptome profile and differential gene expression in telogen and late anagen microdissected hair follicles and the interfollicular epidermis of healthy dogs was investigated by using RNAseq. The genes with the highest expression levels in each group were identified and genes known from studies in other species to be associated with structure and function of hair follicles and epidermis were evaluated. Transcriptome profiling revealed that late anagen follicles expressed mainly keratins and telogen follicles expressed GSN and KRT15. The interfollicular epidermis expressed predominately genes encoding for proteins associated with differentiation. All sample groups express genes encoding for proteins involved in cellular growth and signal transduction.
    [Show full text]
  • Characterization and Isolation of Stem Cell–Enriched Human Hair Follicle Bulge Cells
    Characterization and isolation of stem cell–enriched human hair follicle bulge cells Manabu Ohyama, … , Mark C. Udey, Jonathan C. Vogel J Clin Invest. 2006;116(1):249-260. https://doi.org/10.1172/JCI26043. Research Article Dermatology The human hair follicle bulge is an important niche for keratinocyte stem cells (KSCs). Elucidation of human bulge cell biology could be facilitated by analysis of global gene expression profiles and identification of unique cell-surface markers. The lack of distinctive bulge morphology in human hair follicles has hampered studies of bulge cells and KSCs. In this study, we determined the distribution of label-retaining cells to define the human anagen bulge. Using navigated laser capture microdissection, bulge cells and outer root sheath cells from other follicle regions were obtained and analyzed with cDNA microarrays. Gene transcripts encoding inhibitors of WNT and activin/bone morphogenic protein signaling were overrepresented in the bulge, while genes responsible for cell proliferation were underrepresented, consistent with the existence of quiescent noncycling KSCs in anagen follicles. Positive markers for bulge cells included CD200, PHLDA1, follistatin, and frizzled homolog 1, while CD24, CD34, CD71, and CD146 were preferentially expressed by non- bulge keratinocytes. Importantly, CD200+ cells (CD200hiCD24loCD34loCD71loCD146lo) obtained from hair follicle suspensions demonstrated high colony-forming efficiency in clonogenic assays, indicating successful enrichment of living human bulge stem cells. The stem cell behavior of enriched bulge cells and their utility for gene therapy and hair regeneration will need to be assessed in in vivo assays. Find the latest version: https://jci.me/26043/pdf Related Commentary, page 19 Research article Characterization and isolation of stem cell– enriched human hair follicle bulge cells Manabu Ohyama,1 Atsushi Terunuma,1 Christine L.
    [Show full text]
  • Comparative Proteomics Analysis of Primary Cutaneous Amyloidosis
    3004 EXPERIMENTAL AND THERAPEUTIC MEDICINE 14: 3004-3012, 2017 Comparative proteomics analysis of primary cutaneous amyloidosis DAXING CAI1, YANG LI2, CHUNLEI ZHOU1, YULIN JIANG2, JIAN JIAO1 and LIN WU3 1Department of Dermatology, Qilu Hospital, Shandong University, Jinan, Shandong 250012; 2Beijing Protein Innovation Co., Ltd., Beijing 101318; 3Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, P.R. China Received August 16, 2016; Accepted May 25, 2017 DOI: 10.3892/etm.2017.4852 Abstract. Primary cutaneous amyloidosis (PCA) is a local- (adjusted P<0.001). KEGG analysis indicated that the upregu- ized skin disorder that is characterized by the abnormal lated proteins were significantly enriched in the signaling deposition of amyloid in the extracellular matrix (ECM) of pathways of cell communication, ECM receptor interaction the dermis. The pathogenesis of PCA is poorly understood. and focal adhesion (adjusted P<0.001). Furthermore, the The objective of the present study was to survey proteome upregulated proteins were enriched in the molecular func- changes in PCA lesions in order to gain insight into the tion of calcium ion binding, and the calcium binding proteins molecular basis and pathogenesis of PCA. Total protein from calmodulin-like protein 5, S100 calcium-binding protein A7 PCA lesions and normal skin tissue samples were extracted (S100A7)/fatty-acid binding protein and S100A8/A9 exhib- and analyzed using the isobaric tags for relative and abso- ited the highest levels of upregulation in PCA. This analysis lute quantitation technique. The function of differentially of differentially expressed proteins in PCA suggests that expressed proteins in PCA were analyzed by gene ontology increased focal adhesion, differentiation and wound healing is (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) associated with the pathogenesis of PCA.
    [Show full text]