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Mitochondrial Genomes of African Pangolins and Insights Into Evolutionary Patterns and Phylogeny of the Family Manidae Zelda Du Toit1,2, Morné Du Plessis2, Desiré L
du Toit et al. BMC Genomics (2017) 18:746 DOI 10.1186/s12864-017-4140-5 RESEARCH ARTICLE Open Access Mitochondrial genomes of African pangolins and insights into evolutionary patterns and phylogeny of the family Manidae Zelda du Toit1,2, Morné du Plessis2, Desiré L. Dalton1,2,3*, Raymond Jansen4, J. Paul Grobler1 and Antoinette Kotzé1,2,4 Abstract Background: This study used next generation sequencing to generate the mitogenomes of four African pangolin species; Temminck’s ground pangolin (Smutsia temminckii), giant ground pangolin (S. gigantea), white-bellied pangolin (Phataginus tricuspis) and black-bellied pangolin (P. tetradactyla). Results: The results indicate that the mitogenomes of the African pangolins are 16,558 bp for S. temminckii, 16,540 bp for S. gigantea, 16,649 bp for P. tetradactyla and 16,565 bp for P. tricuspis. Phylogenetic comparisons of the African pangolins indicated two lineages with high posterior probabilities providing evidence to support the classification of two genera; Smutsia and Phataginus. The total GC content between African pangolins was observed to be similar between species (36.5% – 37.3%). The most frequent codon was found to be A or C at the 3rd codon position. Significant variations in GC-content and codon usage were observed for several regions between African and Asian pangolin species which may be attributed to mutation pressure and/or natural selection. Lastly, a total of two insertions of 80 bp and 28 bp in size respectively was observed in the control region of the black-bellied pangolin which were absent in the other African pangolin species. Conclusions: The current study presents reference mitogenomes of all four African pangolin species and thus expands on the current set of reference genomes available for six of the eight extant pangolin species globally and represents the first phylogenetic analysis with six pangolin species using full mitochondrial genomes. -
The World at the Time of Messel: Conference Volume
T. Lehmann & S.F.K. Schaal (eds) The World at the Time of Messel - Conference Volume Time at the The World The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment and the History of Early Primates 22nd International Senckenberg Conference 2011 Frankfurt am Main, 15th - 19th November 2011 ISBN 978-3-929907-86-5 Conference Volume SENCKENBERG Gesellschaft für Naturforschung THOMAS LEHMANN & STEPHAN F.K. SCHAAL (eds) The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates 22nd International Senckenberg Conference Frankfurt am Main, 15th – 19th November 2011 Conference Volume Senckenberg Gesellschaft für Naturforschung IMPRINT The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates 22nd International Senckenberg Conference 15th – 19th November 2011, Frankfurt am Main, Germany Conference Volume Publisher PROF. DR. DR. H.C. VOLKER MOSBRUGGER Senckenberg Gesellschaft für Naturforschung Senckenberganlage 25, 60325 Frankfurt am Main, Germany Editors DR. THOMAS LEHMANN & DR. STEPHAN F.K. SCHAAL Senckenberg Research Institute and Natural History Museum Frankfurt Senckenberganlage 25, 60325 Frankfurt am Main, Germany [email protected]; [email protected] Language editors JOSEPH E.B. HOGAN & DR. KRISTER T. SMITH Layout JULIANE EBERHARDT & ANIKA VOGEL Cover Illustration EVELINE JUNQUEIRA Print Rhein-Main-Geschäftsdrucke, Hofheim-Wallau, Germany Citation LEHMANN, T. & SCHAAL, S.F.K. (eds) (2011). The World at the Time of Messel: Puzzles in Palaeobiology, Palaeoenvironment, and the History of Early Primates. 22nd International Senckenberg Conference. 15th – 19th November 2011, Frankfurt am Main. Conference Volume. Senckenberg Gesellschaft für Naturforschung, Frankfurt am Main. pp. 203. -
Learning About Mammals
Learning About Mammals The mammals (Class Mammalia) includes everything from mice to elephants, bats to whales and, of course, man. The amazing diversity of mammals is what has allowed them to live in any habitat from desert to arctic to the deep ocean. They live in trees, they live on the ground, they live underground, and in caves. Some are active during the day (diurnal), while some are active at night (nocturnal) and some are just active at dawn and dusk (crepuscular). They live alone (solitary) or in great herds (gregarious). They mate for life (monogamous) or form harems (polygamous). They eat meat (carnivores), they eat plants (herbivores) and they eat both (omnivores). They fill every niche imaginable. Mammals come in all shapes and sizes from the tiny pygmy shrew, weighing 1/10 of an ounce (2.8 grams), to the blue whale, weighing more than 300,000 pounds! They have a huge variation in life span from a small rodent living one year to an elephant living 70 years. Generally, the bigger the mammal, the longer the life span, except for bats, which are as small as rodents, but can live for up to 20 years. Though huge variation exists in mammals, there are a few physical traits that unite them. 1) Mammals are covered with body hair (fur). Though marine mammals, like dolphins and whales, have traded the benefits of body hair for better aerodynamics for traveling in water, they do still have some bristly hair on their faces (and embryonically - before birth). Hair is important for keeping mammals warm in cold climates, protecting them from sunburn and scratches, and used to warn off others, like when a dog raises the hair on its neck. -
Identificado El Primer Fósil De Pangolín En La Península Ibérica
TIERRA Identificado el primer fósil de pangolín en la península ibérica El análisis del fémur de un pangolín de hace 16 millones de años, hallado en los años 70 en el yacimiento de Can Cerdà, en la cuenca del Vallès-Penedès (Cataluña), ha permitido identificar el primer registro de pangolines fósiles en la península ibérica. Los restos conservan características primitivas y se han asignado a un género ya extinto. Estos animales actualmente viven en Asia y África, pero hace más de cinco millones de años estuvieron también presentes en Europa. SINC 21/3/2018 10:30 CEST Ejemplar joven de pangolín asiático (Smutsia temminckii). / Maria Diekmann of Rare and Endangered Species Trust / CC BY 2.0 En la actualidad, los pangolines (u osos hormigueros escamosos) están representados por tres géneros, que difieren en su distribución geográfica y adaptaciones locomotoras. Los pangolines asiáticos se incluyen en el género Manis, mientras que los africanos están incluidos en Smutsia (pangolines de tierra) y Phataginus (pangolines arbóreos). Pero durante el Eoceno (hace más de 33 millones de años, los pangolines se extendían TIERRA desde Asia hasta América del Norte. El fémur fue excavado hace varias décadas en el yacimiento de Can Cerdà, pero el material nunca fue dibujado o descrito, y aparentemente fue olvidado En el Mioceno se encontraron exclusivamente en Europa, donde estuvieron representados por el género extinto Necromanis, de relaciones inciertas con las especies actuales. En Europa se han identificado distintas especies de este género durante el Oligoceno (hace más de 23 millones de años) y el Mioceno (hace entre 23 y 5 millones de años), generalmente representadas por restos fósiles fragmentarios. -
Autecology of the Sunda Pangolin (Manis Javanica) in Singapore
AUTECOLOGY OF THE SUNDA PANGOLIN (MANIS JAVANICA) IN SINGAPORE LIM T-LON, NORMAN (B.Sc. (Hons.), NUS) A THESIS SUBMITTED FOR THE DEGREE OF MASTER OF SCIENCE DEPARTMENT OF BIOLOGICAL SCIENCES NATIONAL UNIVERSITY OF SINGAPORE 2007 An adult male Manis javanica (MJ17) raiding an arboreal Oceophylla smaradgina nest. By shutting its nostrils and eyes, the Sunda Pangolin is able to protect its vulnerable parts from the powerful bites of this ant speces. The scales and thick skin further reduce the impacts of the ants’ attack. ii ACKNOWLEDGEMENTS My supervisor Professor Peter Ng Kee Lin is a wonderful mentor who provides the perfect combination of support and freedom that every graduate student should have. Despite his busy schedule, he always makes time for his students and provides the appropriate advice needed. His insightful comments and innovative ideas never fail to impress and inspire me throughout my entire time in the University. Lastly, I am most grateful to Prof. Ng for seeing promise in me and accepting me into the family of the Systematics and Ecology Laboratory. I would also like to thank Benjamin Lee for introducing me to the subject of pangolins, and subsequently introducing me to Melvin Gumal. They have guided me along tremendously during the preliminary phase of the project and provided wonderful comments throughout the entire course. The Wildlife Conservation Society (WCS) provided funding to undertake this research. In addition, field biologists from the various WCS offices in Southeast Asia have helped tremendously throughout the project, especially Anthony Lynam who has taken time off to conduct a camera-trapping workshop. -
The Conservation Biology of Tortoises
The Conservation Biology of Tortoises Edited by Ian R. Swingland and Michael W. Klemens IUCN/SSC Tortoise and Freshwater Turtle Specialist Group and The Durrell Institute of Conservation and Ecology Occasional Papers of the IUCN Species Survival Commission (SSC) No. 5 IUCN—The World Conservation Union IUCN Species Survival Commission Role of the SSC 3. To cooperate with the World Conservation Monitoring Centre (WCMC) The Species Survival Commission (SSC) is IUCN's primary source of the in developing and evaluating a data base on the status of and trade in wild scientific and technical information required for the maintenance of biological flora and fauna, and to provide policy guidance to WCMC. diversity through the conservation of endangered and vulnerable species of 4. To provide advice, information, and expertise to the Secretariat of the fauna and flora, whilst recommending and promoting measures for their con- Convention on International Trade in Endangered Species of Wild Fauna servation, and for the management of other species of conservation concern. and Flora (CITES) and other international agreements affecting conser- Its objective is to mobilize action to prevent the extinction of species, sub- vation of species or biological diversity. species, and discrete populations of fauna and flora, thereby not only maintain- 5. To carry out specific tasks on behalf of the Union, including: ing biological diversity but improving the status of endangered and vulnerable species. • coordination of a programme of activities for the conservation of biological diversity within the framework of the IUCN Conserva- tion Programme. Objectives of the SSC • promotion of the maintenance of biological diversity by monitor- 1. -
Pangolin Trade in the Mong La Wildlife Market and the Role of Myanmar in the Smuggling of Pangolins Into China
Global Ecology and Conservation 5 (2016) 118–126 Contents lists available at ScienceDirect Global Ecology and Conservation journal homepage: www.elsevier.com/locate/gecco Original research article Pangolin trade in the Mong La wildlife market and the role of Myanmar in the smuggling of pangolins into China Vincent Nijman a, Ming Xia Zhang b, Chris R. Shepherd c,∗ a Oxford Wildlife Trade Research Group, Oxford Brookes University, Oxford, UK b Xishuangbanna Tropical Botanical Gardens, Chinese Academy of Sciences, Mengla, China c TRAFFIC, Petaling Jaya, Malaysia article info a b s t r a c t Article history: We report on the illegal trade in live pangolins, their meat, and their scales in the Special Received 7 November 2015 Development Zone of Mong La, Shan State, Myanmar, on the border with China, and Received in revised form 18 December 2015 present an analysis of the role of Myanmar in the trade of pangolins into China. Mong Accepted 18 December 2015 La caters exclusively for the Chinese market and is best described as a Chinese enclave in Myanmar. We surveyed the morning market, wildlife trophy shops and wild meat restaurants during four visits in 2006, 2009, 2013–2014, and 2015. We observed 42 bags Keywords: of scales, 32 whole skins, 16 foetuses or pangolin parts in wine, and 27 whole pangolins for Burma CITES sale. Our observations suggest Mong La has emerged as a significant hub of the pangolin Conservation trade. The origin of the pangolins is unclear but it seems to comprise a mixture of pangolins Manis from Myanmar and neighbouring countries, and potentially African countries. -
The Illegal Wildlife Trade: Through the Eyes of a One-Year-Old Pangolin (Manis Javanica)
Animal Studies Journal Volume 9 Number 2 Article 6 2020 The Illegal Wildlife Trade: Through The Eyes of a One-Year-Old Pangolin (Manis javanica) Lelia Bridgeland-Stephens University of Birmingham, [email protected] Follow this and additional works at: https://ro.uow.edu.au/asj Part of the Animal Studies Commons, Creative Writing Commons, Criminology Commons, Natural Resources and Conservation Commons, Other Animal Sciences Commons, and the Other Anthropology Commons Recommended Citation Bridgeland-Stephens, Lelia, The Illegal Wildlife Trade: Through The Eyes of a One-Year-Old Pangolin (Manis javanica), Animal Studies Journal, 9(2), 2020, 111-146. Available at:https://ro.uow.edu.au/asj/vol9/iss2/6 Research Online is the open access institutional repository for the University of Wollongong. For further information contact the UOW Library: [email protected] The Illegal Wildlife Trade: Through The Eyes of a One-Year-Old Pangolin (Manis javanica) Abstract This paper explores the literature on the illegal wildlife trade (IWT) by following the journey of a single imagined Sunda pangolin (Manis javanica) through the entire trading process. Literature on IWT frequently refers to non-human animals in terms of collectives, species, or body parts, for example ‘tons of pangolin scales’, rather than as subjective individuals. In contrast, this paper centralizes the experiences of an individual pangolin by using a cross- disciplinary methodology, combining fact with a fictional narrative of subjective pangolin experience, in an empathetic and egomorphic process. The paper draws together known legislation, trade practices, and pangolin biology, structured around the journey of an imagined pangolin. -
PROCEEDINGS of the WORKSHOP on TRADE and CONSERVATION of PANGOLINS NATIVE to SOUTH and SOUTHEAST ASIA 30 June – 2 July 2008, Singapore Zoo Edited by S
PROCEEDINGS OF THE WORKSHOP ON TRADE AND CONSERVATION OF PANGOLINS NATIVE TO SOUTH AND SOUTHEAST ASIA 30 June – 2 July 2008, Singapore Zoo Edited by S. Pantel and S.Y. Chin Wildlife Reserves Singapore Group PROCEEDINGS OF THE WORKSHOP ON TRADE AND CONSERVATION OF PANGOLINS NATIVE TO SOUTH AND SOUTHEAST ASIA 30 JUNE –2JULY 2008, SINGAPORE ZOO EDITED BY S. PANTEL AND S. Y. CHIN 1 Published by TRAFFIC Southeast Asia, Petaling Jaya, Selangor, Malaysia © 2009 TRAFFIC Southeast Asia All rights reserved. All material appearing in these proceedings is copyrighted and may be reproduced with permission. Any reproduction, in full or in part, of this publication must credit TRAFFIC Southeast Asia as the copyright owner. The views of the authors expressed in these proceedings do not necessarily reflect those of the TRAFFIC Network, WWF or IUCN. The designations of geographical entities in this publication, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of TRAFFIC or its supporting organizations concerning the legal status of any country, territory, or area, or its authorities, or concerning the delimitation of its frontiers or boundaries. The TRAFFIC symbol copyright and Registered Trademark ownership is held by WWF. TRAFFIC is a joint programme of WWF and IUCN. Layout by Sandrine Pantel, TRAFFIC Southeast Asia Suggested citation: Sandrine Pantel and Chin Sing Yun (ed.). 2009. Proceedings of the Workshop on Trade and Conservation of Pangolins Native to South and Southeast Asia, 30 June-2 July -
Zoo Boise's Animal Collection
Updated: 10/29/2020 Zoo Boise’s Animal Collection Zoo Boise’s animal collection changes frequently and all animals in the collection are available to adopt. 3-banded Armadillo Long·haired Fruit Bat African Clawed Frog Madagascar Hissing Cockroach African Crested Porcupine Magellanic Penguin African Wild Dog Maned Wolf African Plated Lizard Mission golden-eyed tree frog Aldabra Tortoise Speckled Mousebird Alexandrine Parakeet Nile Crocodile Annam Stick Insect North American Porcupine Amazon Milk Frog Nyala Amur Tiger Olive Baboon Bat-eared Fox Patas Monkey Black-handed Spider Monkey Pied Crow Black-tailed Prairie Dog Prehensile-tailed Skink Blue-bellied Roller Red Panda·Red-capped cardinal Blue-Grey Tanager Red Billed Fire Finch California King Snake Red Legged Running Frog Cape-thick Knee Ring-tailed Lemur Capybara Rock Hyrax Cichlid Russian Tortoise Cotton-top Tamarin Sea Eagle Crested Gecko Serval Desert Tortoise Sheep East African Grey Crowned-Crane Silvery Cheeked Hornbill Giant Anteater Slender-tailed Meerkat Giant African Millipede Sloth Bear·Snow Leopard Gibbon Striped Hyena Gila Monster Spotted running frog Giraffe South African Vervet Goat Southern three-banded armadillo Gorongosa Girdled Lizard Southern Ground Hornbill Great Horned Owl Spotted-necked Otter Greater Rhea Striped Skunk Green Tree Python Tailless Whip Scorpion Grevy’s Zebra Trumpeter Hornbill Inca Tern Warthog Indian Flying Fox Orange Breasted Waxbill Indian Sarus Crane Western Red-Tailed Hawk Kenyan Sand Boa Western Screech Owl Kinkajou White-backed Vulture Komodo dragon White-eyed assassin bug Linne’s Two-Toed Sloth White nosed Coati Lion Yellow-headed poison frog . -
71St Annual Meeting Society of Vertebrate Paleontology Paris Las Vegas Las Vegas, Nevada, USA November 2 – 5, 2011 SESSION CONCURRENT SESSION CONCURRENT
ISSN 1937-2809 online Journal of Supplement to the November 2011 Vertebrate Paleontology Vertebrate Society of Vertebrate Paleontology Society of Vertebrate 71st Annual Meeting Paleontology Society of Vertebrate Las Vegas Paris Nevada, USA Las Vegas, November 2 – 5, 2011 Program and Abstracts Society of Vertebrate Paleontology 71st Annual Meeting Program and Abstracts COMMITTEE MEETING ROOM POSTER SESSION/ CONCURRENT CONCURRENT SESSION EXHIBITS SESSION COMMITTEE MEETING ROOMS AUCTION EVENT REGISTRATION, CONCURRENT MERCHANDISE SESSION LOUNGE, EDUCATION & OUTREACH SPEAKER READY COMMITTEE MEETING POSTER SESSION ROOM ROOM SOCIETY OF VERTEBRATE PALEONTOLOGY ABSTRACTS OF PAPERS SEVENTY-FIRST ANNUAL MEETING PARIS LAS VEGAS HOTEL LAS VEGAS, NV, USA NOVEMBER 2–5, 2011 HOST COMMITTEE Stephen Rowland, Co-Chair; Aubrey Bonde, Co-Chair; Joshua Bonde; David Elliott; Lee Hall; Jerry Harris; Andrew Milner; Eric Roberts EXECUTIVE COMMITTEE Philip Currie, President; Blaire Van Valkenburgh, Past President; Catherine Forster, Vice President; Christopher Bell, Secretary; Ted Vlamis, Treasurer; Julia Clarke, Member at Large; Kristina Curry Rogers, Member at Large; Lars Werdelin, Member at Large SYMPOSIUM CONVENORS Roger B.J. Benson, Richard J. Butler, Nadia B. Fröbisch, Hans C.E. Larsson, Mark A. Loewen, Philip D. Mannion, Jim I. Mead, Eric M. Roberts, Scott D. Sampson, Eric D. Scott, Kathleen Springer PROGRAM COMMITTEE Jonathan Bloch, Co-Chair; Anjali Goswami, Co-Chair; Jason Anderson; Paul Barrett; Brian Beatty; Kerin Claeson; Kristina Curry Rogers; Ted Daeschler; David Evans; David Fox; Nadia B. Fröbisch; Christian Kammerer; Johannes Müller; Emily Rayfield; William Sanders; Bruce Shockey; Mary Silcox; Michelle Stocker; Rebecca Terry November 2011—PROGRAM AND ABSTRACTS 1 Members and Friends of the Society of Vertebrate Paleontology, The Host Committee cordially welcomes you to the 71st Annual Meeting of the Society of Vertebrate Paleontology in Las Vegas. -
A Pangolin Genome Hub for the Research Community
Database, 2016, 1–10 doi: 10.1093/database/baw063 Original article Original article PGD: a pangolin genome hub for the research community Tze King Tan1,2, Ka Yun Tan1,3, Ranjeev Hari1,2, Aini Mohamed Yusoff1,2, Guat Jah Wong1, Cheuk Chuen Siow1, Naresh V.R. Mutha1, Mike Rayko4, Aleksey Komissarov4, Pavel Dobrynin4, Ksenia Krasheninnikova4, Gaik Tamazian4, Ian C. Paterson2,5, Wesley C. Warren6, Warren E. Johnson7, Stephen J. O’Brien4,8 and Siew Woh Choo1,2,9,* 1Genome Informatics Research Laboratory, Centre for Research in Biotechnology for Agriculture (CEBAR), High Impact Research Building, University of Malaya, 50603 Kuala Lumpur, Malaysia, 2Department of Oral and Craniofacial Sciences, Faculty of Dentistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, 3Institute of Biology Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur Malaysia, 4Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg 199004, Russia, 5Oral Cancer Research and Coordinating Centre, Faculty of Dentistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, 6McDonnell Genome Institute, Washington University, St Louis, MO 63108, USA, 7Smithsonian Conservation Biology Institute, Front Royal, Virginia 22630, USA, 8Oceanographic Center, Nova Southeastern University, Ft Lauderdale, FL, 33004, USA and 9Genome Solutions Sdn Bhd, Suite 8, Innovation Incubator UM, Level 5, Research Management & Innovation Complex, University of Malaya, 50603 Kuala Lumpur, Malaysia *Corresponding author: Tel: þ603-79676463; Email: [email protected] Citation details: Tan,T.K., Tan,K.Y., Hari,R. et al. PGD: a pangolin genome hub for the research community. Database (2016) Vol. 2016: article ID baw063; doi:doi:10.1093/database/baw063 Received 24 October 2015; Revised 15 March 2016; Accepted 11 April 2016 Abstract Pangolins (order Pholidota) are the only mammals covered by scales.