Around the World with Brassicas
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Research Team Led by NYBG Scientist Identifies the Likely Original Relative of Many Food Crops, a Resource That Could Make Them More Environmentally Resilient
FOR IMMEDIATE RELEASE: May 24, 2021 Research Team Led by NYBG Scientist Identifies the Likely Original Relative of Many Food Crops, a Resource That Could Make Them More Environmentally Resilient Turnips, Broccoli Rabe, Bok Choy, and Others Might Benefit from the Genetic Diversity of Their Ancestor, Wild Brassica rapa, Probably First Domesticated More Than 3,000 Years Ago Wild Brassica rapa has been domesticated into a wide variety of related food crops, including turnips, broccoli rabe, bok choy, and oilseeds such as turnip rape and sarson. Illustration by Alex McAlvay, Ph.D. Bronx, NY—In a peer-reviewed article published online by the journal Molecular Biology and Evolution, a research team led by a New York Botanical Garden (NYBG) scientist identifies the likely wild, original relative of a group of important domesticated food plants, including turnips, broccoli rabe, bok choy, napa cabbage, and mizuna, a finding that could help improve the productivity and resilience of these crops and prioritize conservation efforts. Alex McAlvay, Ph.D., the Kate E. Tode Assistant Curator in NYBG’s Institute of Economic Botany, and his collaborators traced the ancestry of these plants, all of which are members of the same species, Brassica rapa, to the mountains of Central Asia, where they believe the species might have been originally domesticated more than 3,000 years ago. nybg.org “The wild relatives of crops harbor diversity that has been lost through generations of breeding and crop selection,” Dr. McAlvay said. “Identifying the center of origin of the individual crop plant is important as it often indicates where most of the crop diversity is present.” Thousands of years of selective breeding by humans for various desirable traits have led to the diversification of B. -
Brassica Rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes Alex C
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.05.438488; this version posted April 6, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Brassica rapa domestication: untangling wild and feral forms and convergence of crop morphotypes Alex C. McAlvay, Aaron P. Ragsdale, Makenzie E. Mabry, Xinshuai Qi, Kevin A. Bird, Pablo Velasco, Hong An, J. Chris Pires, Eve Emshwiller Abstract The study of domestication contributes to our knowledge of evolution and crop genetic resources. Human selection has shaped wild Brassica rapa into diverse turnip, leafy, and oilseed crops. Despite its worldwide economic importance and potential as a model for understanding diversification under domestication, insights into the number of domestication events and initial crop(s) domesticated in B. rapa have been limited due to a lack of clarity about the wild or feral status of conspecific non-crop relatives. To address this gap and reconstruct the domestication history of B. rapa, we analyzed 68,468 genotyping-by-sequencing-derived SNPs for 416 samples in the largest diversity panel of domesticated and weedy B. rapa to date. To further understand the center of origin, we modeled the potential range of wild B. rapa during the mid-Holocene. Our analyses of genetic diversity across B. rapa morphotypes suggest that non-crop samples from the Caucasus, Siberia, and Italy may be truly wild, while those occurring in the Americas and much of Europe are feral. -
Comparative Mapping Between Arabidopsis Thaliana and Brassica Nigra Indicates That Brassica Genomes Have Evolved Through Extensi
Copyright 1998 by the Genetics Society of America Comparative Mapping Between Arabidopsis thaliana and Brassica nigra Indicates That Brassica Genomes Have Evolved Through Extensive Genome Replication Accompanied by Chromosome Fusions and Frequent Rearrangements Ulf Lagercrantz Department of Plant Biology, Swedish University of Agricultural Sciences, S-750 07 Uppsala, Sweden Manuscript received March 27, 1998 Accepted for publication July 24, 1998 ABSTRACT Chromosome organization and evolution in the Brassicaceae family was studied using comparative linkage mapping. A total of 160 mapped Arabidopsis thaliana DNA fragments identi®ed 284 homologous loci covering 751 cM in Brassica nigra. The data support that modern diploid Brassica species are descended from a hexaploid ancestor, and that the A. thaliana genome is similar in structure and complexity to those of each of the hypothetical diploid progenitors of the proposed hexaploid. Thus, the Brassica lineage probably went through a triplication after the divergence of the lineages leading to A. thaliana and B. nigra. These duplications were also accompanied by an exceptionally high rate of chromosomal rearrangements. The average length of conserved segments between A. thaliana and B. nigra was estimated at 8 cM. This estimate corresponds to z90 rearrangements since the divergence of the two species. The estimated rate of chromosomal rearrangements is higher than any previously reported data based on comparative mapping. Despite the large number of rearrangements, ®ne-scale comparative mapping between model plant A. thal- iana and Brassica crops is likely to result in the identi®cation of a large number of genes that affect important traits in Brassica crops. NE important aspect of genome evolution is polyploid (Masterson 1994). -
S41598-018-21689-Z.Pdf
www.nature.com/scientificreports OPEN Demographic analysis of arrhenotokous parthenogenesis and bisexual reproduction Received: 10 October 2017 Accepted: 8 February 2018 of Frankliniella occidentalis Published: xx xx xxxx (Pergande) (Thysanoptera: Thripidae) Tianbo Ding1, Hsin Chi2, Ayhan Gökçe2, Yulin Gao3 & Bin Zhang 1 Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae) is a serious pest that is capable of bisexual and arrhenotokous reproduction. In arrhenotokous reproduction, virgin females initially produce male ofspring; later, when their sons are sexually mature, the mothers begin bisexual reproduction by carrying out oedipal mating with their sons. Because a virgin female produces many male ofspring before oedipal mating occurs, multiple oedipal mating is common. In this study, we investigated the efect of multiple oedipal mating on the population growth of F. occidentalis by using the age-stage, two-sex life table theory. In the arrhenotokous cohorts, all unfertilized eggs developed into males. In the bisexual cohorts, the ofspring sex ratio was signifcantly female biased with the mean number of female ofspring and male ofspring being 72.68 and 29.00, respectively. These were the same as the net reproductive rate of female ofspring and male ofspring. In arrhenotokous cohorts, the number of males available for oedipal mating signifcantly afected the production of female ofspring. The number of female ofspring increased as the number of sons available for oedipal mating increased. Correctly characterizing this unique type of reproduction will provide important information for predicting the timing of future outbreaks of F. occidentalis, as well as aiding in formulating successful management strategies against the species. Te western fower thrips (WFT), Frankliniella occidentalis (Pergande) (Tysanoptera: Tripidae), is one of the most economically important insect pests of many horticultural crops especially in greenhouses1,2. -
Summer CSA Week #18, 2019
SS oo ll aaA mi nisGGtry of Strr. Maatthetwt Liuithaaeran CFhFurch aa rr mm John and I arrived at the farm at 5am Saturday morning to pack up for market and found our first frost. Our av - erage first frost date here is October 16, but I don’t think in all six years that I’ve been with the farm that we’ve actually had a frost even within two weeks of this date, let alone BEFORE it. What a swing…nearly 80 degrees earlier in the week down to freezing! But then a few October 15, 2019 things are different this time of year than others. For one we have Brussel sprouts almost ready to harvest. LAST MARKETS Every year we’ve grown these, they have matured (and OF THE SEASON! sweetened) close to the first week of December…just after our CSA season ends. But this year, John added a new heat-tolerant variety to the mix so we should have an extended sprout season URBANA this year! We’re also growing parsnips for the first time. I can’t tell you how many people ask MARKET for parsnips at the November markets. Nobody else in town grows them so we finally suc - AT THE cumbed to the pressure. They are a very long season crop (which means a long weeding season and tying up the field), so we really SQUARE hope all of the parsnip enthusiasts show up! Both of these Fall treats ENDS OCTOBER 26 should hit your box before the end of October. Saturdays - 7am-12pm Each year, we listen to our customers and try to respond for improved Lincoln Square variety, quality, etc (and Brussel sprouts and parsnips!). -
Nutritional Guidance in Sakado Folate Project
Chapter 4 Nutritional Guidance in Sakado Folate Project Notification of thethe C677T GenotypeGenotype of of Methylenetetrahydrofolate Reductase IncreasedIncreased both both Serum Serum Folate Folate and and the the Intake Intake of ofGreen Green Veg‐ etablesVegetables MayumiMayumi Yurimoto, Yurimoto, Mami Hiraoka,Mami Hiraoka, MitsuyoMitsuyo Kageyama, Kageyama, Yoshiko Kontai,Yoshiko Kontai, ChiharuChiharu Nishijima, Nishijima, KaoriKaori Sakamoto Sakamoto and YasuoYasuo Kagawa Kagawa Additional information is available at the end of the chapter http://dx.doi.org/10.5772/intechopen.74396 Abstract Background: Serum folate levels are lower in TT homozygotes of the single-nucleotide polymorphism (rs1801133) of methylenetetrahydrofolate reductase (MTHFR) than in CC homozygotes and CT heterozygotes. Objective: To improve folate status, the genotype was notified to each subject to motivate them to eat more green-yellow vegetables. Design: Genotype, dietary folate intake, and blood biochemistry were determined and statistically analyzed for 404 subjects (109 males, mean 58.9 years; 295 females, mean 61.8 years). Their serum folate and total homocysteine (tHcy) concentrations were mea- sured before and after receiving nutritional guidance and genotype notification. Results: The frequencies of the CC, CT, and TT MTHFR genotypes were 35.4, 49.7, and 14.8%, respectively. TT homozygote participants significantly increased their intake of green-yellow vegetables (p < 0.01) and of food-derived folate (p < 0.05) following nutritional guidance. The increase in serum folate (p < 0.001) and the decrease in tHcy (p < 0.001) in TT homozygotes following nutritional guidance were more than twice that of the CC homozygote and CT heterozygote participants. An increase in broccoli, spinach and Komatsuna intake was observed following nutritional guidance, irrespective of the season. -
Brassica Rapa)Ssp
Li et al. Horticulture Research (2020) 7:212 Horticulture Research https://doi.org/10.1038/s41438-020-00449-z www.nature.com/hortres ARTICLE Open Access A chromosome-level reference genome of non- heading Chinese cabbage [Brassica campestris (syn. Brassica rapa)ssp. chinensis] Ying Li 1,Gao-FengLiu1,Li-MingMa2,Tong-KunLiu 1, Chang-Wei Zhang 1, Dong Xiao1, Hong-Kun Zheng2, Fei Chen1 and Xi-Lin Hou 1 Abstract Non-heading Chinese cabbage (NHCC) is an important leafy vegetable cultivated worldwide. Here, we report the first high-quality, chromosome-level genome of NHCC001 based on PacBio, Hi-C, and Illumina sequencing data. The assembled NHCC001 genome is 405.33 Mb in size with a contig N50 of 2.83 Mb and a scaffold N50 of 38.13 Mb. Approximately 53% of the assembled genome is composed of repetitive sequences, among which long terminal repeats (LTRs, 20.42% of the genome) are the most abundant. Using Hi-C data, 97.9% (396.83 Mb) of the sequences were assigned to 10 pseudochromosomes. Genome assessment showed that this B. rapa NHCC001 genome assembly is of better quality than other currently available B. rapa assemblies and that it contains 48,158 protein-coding genes, 99.56% of which are annotated in at least one functional database. Comparative genomic analysis confirmed that B. rapa NHCC001 underwent a whole-genome triplication (WGT) event shared with other Brassica species that occurred after the WGD events shared with Arabidopsis. Genes related to ascorbic acid metabolism showed little variation among the three B. rapa subspecies. The numbers of genes involved in glucosinolate biosynthesis and catabolism 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; were higher in NHCC001 than in Chiifu and Z1, due primarily to tandem duplication. -
The Effect of Plant Development on Thrips Resistance in Capsicum
Arthropod-Plant Interactions https://doi.org/10.1007/s11829-018-9645-6 ORIGINAL PAPER The effect of plant development on thrips resistance in Capsicum Pauline van Haperen1,2 · Roeland E. Voorrips1 · Joop J. A. van Loon2 · Ben Vosman1 Received: 28 March 2018 / Accepted: 25 September 2018 © The Author(s) 2018 Abstract Western flower thrips [Frankliniella occidentalis (Pergande)] is a worldwide pest insect that causes damage in pepper cul- tivation, so growers would benefit from host plant resistance. The objectives of this study were (1) to evaluate the effect of plant age on thrips resistance using nine Capsicum accessions with different levels of thrips resistance at three different plant ages, and (2) to study the effect of leaf age on thrips resistance in a resistant and a susceptible pepper accession. The fraction of first instar larvae that did not develop into second instar was used as a measure for thrips resistance. Our results show that plants start to develop thrips resistance when they are between 4 and 8 weeks old. This transition was most marked on the resistant accession CGN16975, on which about 50% of the L1 larvae developed into the next stage on 4-week-old plants, whereas none of them developed beyond the L1 stage on 8- or 12-week-old plants. Furthermore, it is shown that youngest fully opened leaves of the resistant accession CGN16975 are significantly more resistant to thrips than older leaves; 89% of the L1 larvae did not develop into the next stage on the youngest leaves, whereas 57% did not develop beyond the L1 stage on the oldest leaves. -
Comparative Antimicrobial Activity Study of Brassica Oleceracea †
Proceedings Comparative Antimicrobial Activity Study of Brassica oleceracea † Sandeep Waghulde *, Nilofar Abid Khan *, Nilesh Gorde, Mohan Kale, Pravin Naik and Rupali Prashant Yewale Konkan Gyanpeeth Rahul Dharkar College of Pharmacy and Research Institute, Karjat, Dist-Raigad, Pin code 410201, India; [email protected] (N.G.); [email protected] (M.K.); [email protected] (P.N.); [email protected] (R.P.Y.) * Correspondence: [email protected] (S.W.); [email protected] (N.A.K.) † Presented at the 22nd International Electronic Conference on Synthetic Organic Chemistry, 15 November– 15 December 2018. Available Online: https://sciforum.net/conference/ecsoc-22. Published: 14 November 2018 Abstract: Medicinal plants are in rich source of antimicrobial agents. The present study was carried out to evaluate the antimicrobial effect of plants from the same species as Brassica oleceracea namely, white cabbage and red cabbage. The preliminary phytochemical analysis was tested by using a different extract of these plants for the presence of various secondary metabolites like alkaloids, flavonoids, tannins, saponins, terpenoids, glycosides, steroids, carbohydrates, and amino acids. The in vitro antimicrobial activity was screened against clinical isolates viz gram positive bacteria Staphylococcus aureus, Streptococcus pyogenes, gram negative bacteria Escherichia coli, Pseudomonas aeruginosa. Extracts found significant inhibition against all the pathogens. Keywords: plant extract; phytochemicals; antibacterial activity; antifungal activity 1. Introduction Despite great progress in the development of medicines, infectious diseases caused by bacteria, fungi, viruses and parasites are still a major threat to public health. The impact is mainly observed in developing countries due to relative unavailability of medicines and the emergence of widespread drug resistance [1]. -
Materials for Beating Flea Beetles in Brassicas
Materials for Beating Flea Beetles in Brassicas Ruth Hazzard, Extension Vegetable Program, University of Massachusetts – Amherst, Department of Plant, Soil and Insect Science, Agricultural Engineering Building, Amherst MA 01003-9295, 413-545-3696 [email protected] Early spring plantings of Brassica crops are often hit hard by flea beetles. Crucifer and striped flea beetles feed on Brassica crops as well as weeds that are in the same family, such as yellow rocket or wild mustard. The crucifer flea beetle (Phyllotreta cruciferae) is uniformly black and shiny, about 2 mm in length, while the striped flea beetle (Phyllotreta striolata) has two yellow stripes on its back. Other species of flea beetles attack other crop families: solanaceous crops such as eggplant, potato, and tomato, or sweet corn. These beetles may look very similar to those found on Brassicas, but if they are feeding on a different crop group, they are almost certainly a different species of flea beetle. While this article will discuss biorational insecticides that will suppress flea beetle, it is important for growers to be familiar with the life cycle of flea beetles and to combine insecticides with many cultural practices to reduce damage and keep populations from building up to unmanageable levels. Feeding damage and crop preference. Flea beetle adults feed on leaves and stems, resulting in numerous ‘shot-holes’. Heavy feeding can kill plants, especially seedlings, and moderate damage can reduce plant size, delay maturity, reduce yield, or render crops unmarketable. Flea beetle larvae feed on roots. The impact of their feeding damage on crop yield is not well understood. -
Dietary Guidelines for Americans 2005
Dietary Guidelines for Americans 2005 U.S. Department of Health and Human Services U.S. Department of Agriculture www.healthierus.gov/dietaryguidelines i MESSAGE FROM THE SECRETARIES We are pleased to present the 2005 Dietary Guidelines for Americans. This document is intended to be a primary source of dietary health information for policymakers, nutrition educators, and health providers. Based on the latest scientific evidence, the 2005 Dietary Guidelines provides information and advice for choosing a nutritious diet, maintaining a healthy weight, achieving adequate exercise, and “keeping foods safe” to avoid foodborne illness. This document is based on the recommendations put forward by the Dietary Guidelines Advisory Committee. The Committee was composed of scientific experts who were responsible for reviewing and analyzing the most current dietary and nutritional information and incorporating this into a scientific evidence-based report. We want to thank them and the other public and private professionals who assisted in developing this document for their hard work and dedication. The more we learn about nutrition and exercise, the more we recognize their importance in everyday life. Children need a healthy diet for normal growth and development, and Americans of all ages may reduce their risk of chronic disease by adopting a nutritious diet and engaging in regular physical activity. However, putting this knowledge into practice is difficult. More than 90 million Americans are affected by chronic diseases and conditions that compromise their quality of life and well-being. Overweight and obesity, which are risk factors for diabetes and other chronic diseases, are more common than ever before. To correct this problem, many Americans must make significant changes in their eating habits and lifestyles. -
21 CFR Ch. I (4–1–10 Edition) § 582.20
§ 582.20 21 CFR Ch. I (4–1–10 Edition) Common name Botanical name of plant source Marjoram, sweet .......................................................................... Majorana hortensis Moench. Mustard, black or brown .............................................................. Brassica nigra (L.) Koch. Mustard, brown ............................................................................ Brassica juncea (L.) Coss. Mustard, white or yellow .............................................................. Brassica hirta Moench. Nutmeg ........................................................................................ Myristica fragrans Houtt. Oregano (oreganum, Mexican oregano, Mexican sage, origan) Lippia spp. Paprika ......................................................................................... Capsicum annuum L. Parsley ......................................................................................... Petroselinum crispum (Mill.) Mansf. Pepper, black ............................................................................... Piper nigrum L. Pepper, cayenne ......................................................................... Capsicum frutescens L. or Capsicum annuum L. Pepper, red .................................................................................. Do. Pepper, white ............................................................................... Piper nigrum L. Peppermint .................................................................................. Mentha piperita L. Poppy seed