Evolutionary Relationships of Heteromyid Rodents John C
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Molecular Systematics of Spiny Pocket Mice (Subfamily Heteromyinae) Inferred from Mitochondrial and Nuclear Sequence Data
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2009-04-17 Molecular Systematics of Spiny Pocket Mice (Subfamily Heteromyinae) Inferred from Mitochondrial and Nuclear Sequence Data Melina Crystal Williamson Brigham Young University - Provo Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Biology Commons BYU ScholarsArchive Citation Williamson, Melina Crystal, "Molecular Systematics of Spiny Pocket Mice (Subfamily Heteromyinae) Inferred from Mitochondrial and Nuclear Sequence Data" (2009). Theses and Dissertations. 1718. https://scholarsarchive.byu.edu/etd/1718 This Thesis is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. MOLECULAR SYSTEMATICS OF SPINY POCKET MICE (SUBFAMILY HETEROMYINAE) INFERRED FROM MITOCHONDRIAL AND NUCLEAR SEQUENCE DATA by Melina C. Williamson A thesis submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Master of Science Department of Biology Brigham Young University August 2009 BRIGHAM YOUNG UNIVERSITY GRADUATE COMMITTEE APPROVAL of a thesis submitted by Melina C. Williamson This thesis has been read by each member of the following graduate committee and by majority vote has been found to be satisfactory. Date Duke S. Rogers, Chair Date Leigh A. Johnson Date Jack W. Sites, Jr. BRIGHAM YOUNG UNIVERSITY As chair of the candidate’s graduate committee, I have read the thesis of Melina C. Williamson in its final form and have found that (1) its format, citations, and bibliographical style are consistent and acceptable and fulfill university and department style requirements; (2) its illustrative materials including figures, tables, and charts are in place; and (3) the final manuscript is satisfactory to the graduate committee and is ready for submission to the university library. -
Classification of Mammals 61
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORCHAPTER SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Classification © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 4 NOT FORof SALE MammalsOR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 2ND PAGES 9781284032093_CH04_0060.indd 60 8/28/13 12:08 PM CHAPTER 4: Classification of Mammals 61 © Jones Despite& Bartlett their Learning,remarkable success, LLC mammals are much less© Jones stress & onBartlett the taxonomic Learning, aspect LLCof mammalogy, but rather as diverse than are most invertebrate groups. This is probably an attempt to provide students with sufficient information NOT FOR SALE OR DISTRIBUTION NOT FORattributable SALE OR to theirDISTRIBUTION far greater individual size, to the high on the various kinds of mammals to make the subsequent energy requirements of endothermy, and thus to the inabil- discussions of mammalian biology meaningful. -
Mammals of the California Desert
MAMMALS OF THE CALIFORNIA DESERT William F. Laudenslayer, Jr. Karen Boyer Buckingham Theodore A. Rado INTRODUCTION I ,+! The desert lands of southern California (Figure 1) support a rich variety of wildlife, of which mammals comprise an important element. Of the 19 living orders of mammals known in the world i- *- loday, nine are represented in the California desert15. Ninety-seven mammal species are known to t ':i he in this area. The southwestern United States has a larger number of mammal subspecies than my other continental area of comparable size (Hall 1981). This high degree of subspeciation, which f I;, ; leads to the development of new species, seems to be due to the great variation in topography, , , elevation, temperature, soils, and isolation caused by natural barriers. The order Rodentia may be k., 2:' , considered the most successful of the mammalian taxa in the desert; it is represented by 48 species Lc - occupying a wide variety of habitats. Bats comprise the second largest contingent of species. Of the 97 mammal species, 48 are found throughout the desert; the remaining 49 occur peripherally, with many restricted to the bordering mountain ranges or the Colorado River Valley. Four of the 97 I ?$ are non-native, having been introduced into the California desert. These are the Virginia opossum, ' >% Rocky Mountain mule deer, horse, and burro. Table 1 lists the desert mammals and their range 1 ;>?-axurrence as well as their current status of endangerment as determined by the U.S. fish and $' Wildlife Service (USWS 1989, 1990) and the California Department of Fish and Game (Calif. -
Special Publications Museum of Texas Tech University Number 63 18 September 2014
Special Publications Museum of Texas Tech University Number 63 18 September 2014 List of Recent Land Mammals of Mexico, 2014 José Ramírez-Pulido, Noé González-Ruiz, Alfred L. Gardner, and Joaquín Arroyo-Cabrales.0 Front cover: Image of the cover of Nova Plantarvm, Animalivm et Mineralivm Mexicanorvm Historia, by Francisci Hernández et al. (1651), which included the first list of the mammals found in Mexico. Cover image courtesy of the John Carter Brown Library at Brown University. SPECIAL PUBLICATIONS Museum of Texas Tech University Number 63 List of Recent Land Mammals of Mexico, 2014 JOSÉ RAMÍREZ-PULIDO, NOÉ GONZÁLEZ-RUIZ, ALFRED L. GARDNER, AND JOAQUÍN ARROYO-CABRALES Layout and Design: Lisa Bradley Cover Design: Image courtesy of the John Carter Brown Library at Brown University Production Editor: Lisa Bradley Copyright 2014, Museum of Texas Tech University This publication is available free of charge in PDF format from the website of the Natural Sciences Research Laboratory, Museum of Texas Tech University (nsrl.ttu.edu). The authors and the Museum of Texas Tech University hereby grant permission to interested parties to download or print this publication for personal or educational (not for profit) use. Re-publication of any part of this paper in other works is not permitted without prior written permission of the Museum of Texas Tech University. This book was set in Times New Roman and printed on acid-free paper that meets the guidelines for per- manence and durability of the Committee on Production Guidelines for Book Longevity of the Council on Library Resources. Printed: 18 September 2014 Library of Congress Cataloging-in-Publication Data Special Publications of the Museum of Texas Tech University, Number 63 Series Editor: Robert J. -
Biological Notes and Descriptions of Two New Moths Phoretic on Spiny Pocket Mice in Costa Rica (Lepidoptera, Tineoidea)
PROC. ENTOMOl. SOC. WASH. 88(1). 1986, pp. 98-109 NEOTROPICAL TlNEIDAE, U: BIOLOGICAL NOTES AND DESCRIPTIONS OF TWO NEW MOTHS PHORETIC ON SPINY POCKET MICE IN COSTA RICA (LEPIDOPTERA, TINEOIDEA) DoNALD R. DAVIS, DALE H . CLAYTON, DANIEL H . J ANZEN, AND ANNE P. BROOKE (DRD) Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, D. C. 20560; (DHC) Committee on Evo lutionary Biology, University of Chicago, Chicago, lIIinois 60637; (DHJ) De partment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 191 04; (APB) Museum of Vertebrate Zoology, Uni versity of Cali fomi a, Berkeley, California 94720. Abstract. - Two new species of tineid moths discovered riding on the backs of two species of spiny pocket mice (Heteromyidae) in Costa Rica are described. Amydria selvae. new species, was found on Heteromys desmarestianus Gray in the rainforest at Finca La Selva and Ptilopsaltis santarosae. new species, occurred on Liomys salvini (Thomas) in the dry forest at Santa Rosa National Park. Only female moths were observed and collected. Biological observations on both moths and their hosts in phoresy are summarized. Recent live-trapping of spiny pocket mice in Costa Rican forests has revealed the association of three species of ph ore tic moths of the family Tineidae. The life histories of the moths are still poorly understood and only the females are known to be phoretic. No males of any of the three species have been discovered. Exca vations of the burrows of the two species of spiny mice are now underway, which we hope will reveal not only the presence of males with associated immatures but also the larval biology. -
The Beaver's Phylogenetic Lineage Illuminated by Retroposon Reads
www.nature.com/scientificreports OPEN The Beaver’s Phylogenetic Lineage Illuminated by Retroposon Reads Liliya Doronina1,*, Andreas Matzke1,*, Gennady Churakov1,2, Monika Stoll3, Andreas Huge3 & Jürgen Schmitz1 Received: 13 October 2016 Solving problematic phylogenetic relationships often requires high quality genome data. However, Accepted: 25 January 2017 for many organisms such data are still not available. Among rodents, the phylogenetic position of the Published: 03 March 2017 beaver has always attracted special interest. The arrangement of the beaver’s masseter (jaw-closer) muscle once suggested a strong affinity to some sciurid rodents (e.g., squirrels), placing them in the Sciuromorpha suborder. Modern molecular data, however, suggested a closer relationship of beaver to the representatives of the mouse-related clade, but significant data from virtually homoplasy- free markers (for example retroposon insertions) for the exact position of the beaver have not been available. We derived a gross genome assembly from deposited genomic Illumina paired-end reads and extracted thousands of potential phylogenetically informative retroposon markers using the new bioinformatics coordinate extractor fastCOEX, enabling us to evaluate different hypotheses for the phylogenetic position of the beaver. Comparative results provided significant support for a clear relationship between beavers (Castoridae) and kangaroo rat-related species (Geomyoidea) (p < 0.0015, six markers, no conflicting data) within a significantly supported mouse-related clade (including Myodonta, Anomaluromorpha, and Castorimorpha) (p < 0.0015, six markers, no conflicting data). Most of an organism’s phylogenetic history is fossilized in their heritable genomic material. Using data from genome sequencing projects, particularly informative regions of this material can be extracted in sufficient num- bers to resolve the deepest history of speciation. -
Platypus Collins, L.R
AUSTRALIAN MAMMALS BIOLOGY AND CAPTIVE MANAGEMENT Stephen Jackson © CSIRO 2003 All rights reserved. Except under the conditions described in the Australian Copyright Act 1968 and subsequent amendments, no part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, duplicating or otherwise, without the prior permission of the copyright owner. Contact CSIRO PUBLISHING for all permission requests. National Library of Australia Cataloguing-in-Publication entry Jackson, Stephen M. Australian mammals: Biology and captive management Bibliography. ISBN 0 643 06635 7. 1. Mammals – Australia. 2. Captive mammals. I. Title. 599.0994 Available from CSIRO PUBLISHING 150 Oxford Street (PO Box 1139) Collingwood VIC 3066 Australia Telephone: +61 3 9662 7666 Local call: 1300 788 000 (Australia only) Fax: +61 3 9662 7555 Email: [email protected] Web site: www.publish.csiro.au Cover photos courtesy Stephen Jackson, Esther Beaton and Nick Alexander Set in Minion and Optima Cover and text design by James Kelly Typeset by Desktop Concepts Pty Ltd Printed in Australia by Ligare REFERENCES reserved. Chapter 1 – Platypus Collins, L.R. (1973) Monotremes and Marsupials: A Reference for Zoological Institutions. Smithsonian Institution Press, rights Austin, M.A. (1997) A Practical Guide to the Successful Washington. All Handrearing of Tasmanian Marsupials. Regal Publications, Collins, G.H., Whittington, R.J. & Canfield, P.J. (1986) Melbourne. Theileria ornithorhynchi Mackerras, 1959 in the platypus, 2003. Beaven, M. (1997) Hand rearing of a juvenile platypus. Ornithorhynchus anatinus (Shaw). Journal of Wildlife Proceedings of the ASZK/ARAZPA Conference. 16–20 March. -
Version 2020-04-20 Dark Kangaroo Mouse (Microdipodops
Version 2020-04-20 Dark Kangaroo Mouse (Microdipodops megacephalus) Species Status Statement. Distribution Dark kangaroo mouse is an inhabitant of the Great Basin Desert. Most of its distribution lies in Nevada and Utah, but it also occurs in small areas of California, Idaho, and Oregon (Auger and Black 2006, Hafner and Upham 2011). Within Utah, individual specimens of this species have been classified in two ways. They have either been attributed to one of two state-endemic subspecies (Microdipodops megacephalus leucotis and M. megacacephalus paululus) (Oliver 2018), or they have been attributed to one of three or four genetically distinct units (Hafner and Upham 2011, Light 2013, Andersen et al. 2013). Table 1. Utah counties currently occupied by this species. Dark Kangaroo Mouse BEAVER IRON JUAB MILLARD TOOELE Abundance and Trends When first described in the 1800’s, dark kangaroo mouse was considered locally common. Research in Utah over the last two decades failed to locate any individuals at most historically documented locations (Auger and Black 2006, Haug 2010, Phillips 2018). The Utah findings mirror rangewide concern of small, fragmented, and declining populations (Hafner and Upham 2011, Andersen et al. 2013). Statement of Habitat Needs and Threats to the Species. Habitat Needs Dark kangaroo mouse habitat generally consists of sandy shrubland with sparse vegetative cover. In Utah, most localities are in stabilized dunes along the margins of historical Lake Bonneville. Appropriate habitat is naturally fragmented and isolated. Threats to the Species Version 2020-04-20 Invasive plants, specifically cheatgrass, and the resulting changes in vegetative cover and fire cycle are the greatest threat to dark kangaroo mouse. -
Dipodomys Ingens)
Species Status Assessment Report for the Giant Kangaroo Rat (Dipodomys ingens) Photo by Elizabeth Bainbridge Version 1.0 August 2020 Prepared by the U.S. Fish and Wildlife Service August 2020 GKR SSA Report – August 2020 EXECUTIVE SUMMARY The U.S. Fish and Wildlife Service listed the giant kangaroo rat (Dipodomys ingens) as endangered under the Endangered Species Act in 1987 due to the threats of habitat loss and widespread rodenticide use (Service 1987, entire). The giant kangaroo rat is the largest species in the genus that contains all kangaroo rats. The giant kangaroo rat is found only in south-central California, on the western slopes of the San Joaquin Valley, the Carrizo and Elkhorn Plains, and the Cuyama Valley. The preferred habitat of the giant kangaroo rat is native, sloping annual grasslands with sparse vegetation (Grinnell, 1932; Williams, 1980). This report summarizes the results of a species status assessment (SSA) that the U. S. Fish and Wildlife Service (Service) completed for the giant kangaroo rat. To assess the species’ viability, we used the three conservation biology principles of resiliency, redundancy, and representation (together, the 3Rs). These principles rely on assessing the species at an individual, population, and species level to determine whether the species can persist into the future and avoid extinction by having multiple resilient populations distributed widely across its range. Giant kangaroo rats remain in fragmented habitat patches throughout their historical range. However, some areas where giant kangaroo rats once existed have not had documented occurrences for 30 years or more. The giant kangaroo rat is found in six geographic areas (units), representing the northern, middle, and southern portions of the range. -
Controlling Pocket Gopher Damage to Conifer Seedlings D.S
FOREST PROTECTION EC 1255 • Revised May 2003 $2.50 Controlling Pocket Gopher Damage to Conifer Seedlings D.S. deCalesta, K. Asman, and N. Allen Contents ocket gophers (or just plain Gopher habits and habitat.............. 1 P “gophers”) damage conifer seed- Control program ........................... 2 lings on thousands of Identifying the pest ......................2 acres in Washington, Assessing the need for treatment ...3 Idaho, and Oregon Damage control techniques ...........3 annually. They invade clearcuts and Applying controls .......................... 7 clip (cut off) roots or Figure 1.—Typical Oregon pocket gopher. Christmas tree plantations .............7 girdle (remove bark from) the bases of conifer seedlings and saplings, causing significant economic losses. Forest plantations ........................ 7 This publication will help you design a program to reduce or eliminate Summary .................................... 8 gopher damage to seedlings and saplings in your forest plantation or Christmas tree farm. Sources of supply ......................... 8 First, we describe pocket gophers, their habits, and habitats. Then we For further information .................. 8 discuss procedures for controlling pocket gopher damages—control techniques, their effectiveness and hazard(s) to the environment, and their use under a variety of tree-growing situations. Gopher habits and habitat Three species of pocket gopher can damage conifer seedlings. The two smaller ones, the northern pocket gopher and the Mazama pocket gopher, are 5 to 9 inches long and brown with some white beneath the chin and belly. The northern gopher is found east of the Cascade Mountains in Oregon and Washington and in Idaho; the Mazama lives in Oregon and Washington west of the Cascades. David S. deCalesta, former Exten- The Camas pocket gopher is similar looking, but larger (10 to 12 inches) sion wildlife specialist, and Kim than the two others. -
Hispid Pocket Mouse Chaetodipus Hispidus
Wyoming Species Account Hispid Pocket Mouse Chaetodipus hispidus REGULATORY STATUS USFWS: No special status USFS R2: No special status USFS R4: No special status Wyoming BLM: No special status State of Wyoming: Nongame Wildlife CONSERVATION RANKS USFWS: No special status WGFD: NSSU (U), Tier III WYNDD: G5, S1S3 Wyoming Contribution: LOW IUCN: Least Concern STATUS AND RANK COMMENTS The Wyoming Natural Diversity Database has assigned Hispid Pocket Mouse (Chaetodipus hispidus) a state conservation rank ranging from S1 (Critically Imperiled) to S3 (Vulnerable) because of uncertainty about the proportion of range occupied and population trends for this species in Wyoming. NATURAL HISTORY Taxonomy: Historically, there were four recognized subspecies of Hispid Pocket Mouse, and only C. h. paradoxus was found in Wyoming 1-5. A recent DNA-based study determined that the previously accepted subspecies are neither morphologically nor genetically distinct and instead proposed new subspecies boundaries delineated by four geographically and ecologically disjunct mitochondrial clades 6. Following this taxonomic revision, Wyoming remains within the distribution of the newly defined subspecies C. h. paradoxus 6. Description: It is possible to identify Hispid Pocket Mouse in the field. It is the largest Wyoming pocket mouse species; adults weigh between 40–60 g and can reach total lengths of 200–223 mm 2. Tail, hind foot, and ear length ranges from 90–113 mm, 25–28 mm, and 12–13 mm, respectively 2. Hispid Pocket Mouse is named for its distinctly coarse dorsal pelage, which is buff to yellowish orange mixed with black hairs, thus leading to an overall brownish or even olive appearance 1, 2, 4, 5, 7. -
Colorado Field Ornithologists the Colorado Field Ornithologists' Quarterly
Journal of the Colorado Field Ornithologists The Colorado Field Ornithologists' Quarterly VOL. 36, NO. 1 Journal of the Colorado Field Ornithologists January 2002 Vol. 36, No. 1 Journal of the Colorado Field Ornithologists January 2002 TABLE OF C ONTENTS A LETTER FROM THE E DITOR..............................................................................................2 2002 CONVENTION IN DURANGO WITH KENN KAUFMANN...................................................3 CFO BOARD MEETING MINUTES: 1 DECEMBER 2001........................................................4 TREE-NESTING HABITAT OF PURPLE MARTINS IN COLORADO.................................................6 Richard T. Reynolds, David P. Kane, and Deborah M. Finch OLIN SEWALL PETTINGILL, JR.: AN APPRECIATION...........................................................14 Paul Baicich MAMMALS IN GREAT HORNED OWL PELLETS FROM BOULDER COUNTY, COLORADO............16 Rebecca E. Marvil and Alexander Cruz UPCOMING CFO FIELD TRIPS.........................................................................................23 THE SHRIKES OF DEARING ROAD, EL PASO COUNTY, COLORADO 1993-2001....................24 Susan H. Craig RING-BILLED GULLS FEEDING ON RUSSIAN-OLIVE FRUIT...................................................32 Nicholas Komar NEWS FROM THE C OLORADO BIRD R ECORDS COMMITTEE (JANUARY 2002).........................35 Tony Leukering NEWS FROM THE FIELD: THE SUMMER 2001 REPORT (JUNE - JULY)...................................36 Christopher L. Wood and Lawrence S. Semo COLORADO F IELD O