Generation of Novel Conditional and Hypomorphic Alleles of the Smad2 Gene and the Effects of Smad2 Removal in Environments with Elevated Retinoid Signaling

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Generation of Novel Conditional and Hypomorphic Alleles of the Smad2 Gene and the Effects of Smad2 Removal in Environments with Elevated Retinoid Signaling GENERATION OF NOVEL CONDITIONAL AND HYPOMORPHIC ALLELES OF THE SMAD2 GENE AND THE EFFECTS OF SMAD2 REMOVAL IN ENVIRONMENTS WITH ELEVATED RETINOID SIGNALING DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Maria Helen Festing, B.S. ***** The Ohio State University 2007 Dissertation Committee: Approved by Professor Michael Weinstein, Ph.D., Advisor Professor Susan Cole, Ph.D. _________________________________ Professor Harold Fisk, Ph.D. Advisor Graduate Program in Molecular Genetics Professor Amanda Simcox, Ph.D. ABSTRACT Smad2 is an intracellular mediator of the transforming growth factor beta (TGF-β) signaling pathway, and regulates target gene transcription. It has been previously shown that, in the mouse, removal of functional Smad2 results in embryonic lethality due to defects in gastrulation. To circumvent this early lethality, the Cre-loxP system was utilized to generate a Smad2 conditional allele. Cre-mediated recombination results in a deletion allele which phenocopies the previously reported Smad2ΔC null mutation. The hypomorphic allele Smad23loxP was also created that can be maintained as a homozygote. However, Smad23loxP/Δ embryos are lethal and encompass a variety of phenotypes, including craniofacial midline defects. Holoprosencephaly (HPE) comprises a spectrum of craniofacial midline defects and is a congenital cephalic disorder. Many candidate factors have been identified that are associated with HPE in humans and animals, which include excessive alcohol and retinoic acid exposure, and mutations or deletions at 12 genetic loci. Seven of these 12 loci have been identified, and include TGIF. TGIF is a corepressor of the retinoid signaling pathway, and removal of this ii repressor results in increased retinoid signaling. TGIF can also function in as a corepressor the transforming growth factor-beta (TGF-β) pathway, interacting with Smad2. Research has indicated that mouse embryos harboring Tgif mutations are more susceptible to teratogenesis induced by exogenous all-trans retinoic acid (atRA) when compared to wild-type littermates, and frequently display HPE. Interestingly, embryos harboring either Smad2 null or hypomorphic alleles are also more susceptible to atRA teratogenesis, and frequently display HPE. Embryos that harbor mutations in both Smad2 and Tgif exhibit a partially- penetrant craniofacial phenotype, which encompasses the HPE spectrum. This indicates that retinoid signaling may be involved in these HPE phenotypes. There are many proteins involved in retinoid signaling, which includes both the retinoid signaling cascade and retinol metabolism. Analysis of gene transcription to determine a possible inherent susceptibility to teratogenesis in Smad2 heterozygous embryos indicated that Adh4 and Cyp26A1, which are both involved in retinol metabolism, were reduced in early embryonic stages when forebrain development is beginning. These transcriptional reductions do not by themselves result in lethality, but when combined with any other factor that perturbs retinoid signaling, HPE can result. Finally, as another method to affect retinoid signaling, a Cyp26A1 null allele was bred to the Smad2 heterozygotes. Consistent with affecting retinoid signaling, the Cyp26A1-/-; Smad2ΔE9,10/+ embryos display midline defects, including HPE. iii DEDICATION To my mother Fran, my father Tom, my brother Tommy, and my grandparents Bill and Helen, for their support and patience over the years. It is necessary to learn when to follow, and when to lead. iv ACKNOWLEDGMENTS I wish to thank my advisor, Dr. Michael Weinstein, for his advice and for allowing me to pursue the project designs, and Dr. Susan Cole, for helping with lab supplies. I am grateful to all my committee members throughout my graduate education: Dr. Susan Cole, Dr. Harold Fisk, Dr. Michael Ostrowski, and Dr. Amanda Simcox for their encouragement. I thank current and former members of the Weinstein Laboratory including Dr. Tessa Carrel, Dr. Mark Hester, Dr. Ye Liu, Samuel Lasse, Kara Keplinger, Samantha McCarthy, J Chris Thompson, Andy Chow, and Joe Mills for their insight, help, and discussion over the years. I also wish to thank Dr. Heithem El- Hodiri for his expertise in helping to perform the Xenopus laevis micro-injections. Finally, I wish to thank the editors of Genesis for the use of the previously published text and figures that are used in this dissertation. Generation of Novel Conditional and Hypomorphic Alleles of the Smad2 Gene, 40:118-123, is reprinted with the permission of Wiley-Liss, Inc., a subsidiary of John Wiley & Sons, Inc. v VITA 30 March 1979………………… Born – Tacoma, WA. May 2000………………………. The Pennsylvania State University, State College, PA. Biology (Genetics), BS. 2002 – present………………… Graduate Teaching Assistant. The Ohio State University. PUBLICATIONS Ye Liu, Maria Festing, John C Thompson, Mark Hester, Scott Rankin, Heithem M El-Hodiri, Aaron M Zorn, and Michael Weinstein. Smad2 and Smad3 coordinately regulate craniofacial and endodermal development. Dev Biol. 2004 June 15; 270(2): 411-426. Ye Liu, Maria H Festing, Mark Hester, John C Thompson, and Michael Weinstein. Generation of novel conditional and hypomorphic alleles of the Smad2 gene. Genesis. 2004 Oct; 40(2):118-123. FIELD OF STUDY Major Field: Molecular Genetics vi TABLE OF CONTENTS Page Abstract ……………………………………………………………………………….. ii Dedication…………………………………………………………………………….. iv Acknowledgments…………………………………………………………………… v Vita…………………………………………………………………………………….. vi List of Tables…………………………………………………………………………. x List of Figures……………………………………………………………………….. xi List of Abbreviations………………………………………………………………… xiii Chapters: 1. Introduction……………………………………………………………………. 1 1.1 Introduction……………………………………………………………. 1 1.2 Development of the Early Mouse Embryo…………………………. 2 1.3 Neural Tube Development and Defects……………………………. 3 1.3.1 Neural Tube Formation and Neural Tube Defects.………. 3 1.3.2 Prosencephalic Development an Holoprosencephaly...… 4 1.4 TGF-β Superfamily Signaling…………...………………………...… 6 1.4.1 The Receptors…….……………………………………….…. 7 1.4.2 The Smads………….……………………………………....... 8 2. Generation of Smad2 Conditional and Hypomorphic Alleles…………….. 16 2.1 Introduction……………………………………………………………. 16 2.2 Results……………………………………………………………….... 17 2.2.1 Creation and Confirmation of the Smad2 Alleles…………. 17 2.2.2 Smad2 3loxP Allele is Hypomorphic……………………….. 21 2.2.3 Conditional Removal of Smad2…………………………….. 24 2.3 Conclusions………………………………………………….………... 26 vii 2.4 Materials…………….………………………………………………… 28 2.4.1 Generation of Targeted ES Cells and Creation of Germline Chimeric Mice….…………………………………. 28 2.4.2 Southern Blot………………………………………………..... 29 2.4.3 Mice and Matings…………………………………………….. 30 2.4.4 Genotyping……………………………………………………. 31 2.4.5 Histology………………………………………………………. 32 2.4.6 Hematoxylin and Eosin Staining…………………………… 33 2.4.7 Xenopus laevis Injection Assay…………………………….. 34 2.4.8 RNA Extraction……………………………………………….. 35 2.4.9 Real-Time PCR…………………………………………...….. 36 3. Removal of Smad2 Results in Increased Sensitivity to Retinoic Acid Induced Holoprosencephaly…………………………………………………. 50 3.1 Introduction…………….……………………………………………… 50 3.1.1 Retinoic Acid Metabolism…………………………………… 51 3.1.2 Retinoid Signaling……………………………………………. 52 3.1.3 Retinoid Signaling Affects TGF-β Signaling………………. 54 3.2 Results………………………………………………………………… 55 3.2.1 Retinoic Acid Signaling is Affected in Smad2 Embryos…. 55 3.2.2 Sensitivity of Smad2 Embryos to Retinoic Acid Teratogenesis………………………………………………… 57 3.2.3 Retinoic Acid Metabolizing Enzymes ADH4 and Cyp26A1 are Affected in Smad2 Embryos……….…………...……… 59 3.3 Conclusions………………………………………………………….. 62 3.4 Materials…………….………………………………………………… 64 3.4.1 Mice and Matings…………………………………………….. 64 3.4.2 Genotyping……………………………………………………. 64 3.4.3 Teratogenic Application of Retinoic Acid………………….. 65 3.4.4 Whole Mount Visualization of β-galactosidase Expression……………………………………………………. 65 3.4.5 Quantification of β-galactosidase expression…………….. 66 3.4.6 RNA Extraction and Analysis……………………………….. 67 3.4.7 Real-Time PCR………………………...…………………….. 68 4. Smad2 and Tgif, in Addition to Strain Background, Work in Concert to Cause Murine Holoprosencephaly 80 4.1 Introduction….………………………………………………………… 80 4.2 Results………………………………………………………………… 80 4.2.1 Expression Domain of Tgif and Tgif2………………………. 80 4.2.2 Retinoid Signaling Affected in Tgif Embryos…………….... 83 4.2.3 Frequency and Penetrance of Holoprosencephaly in 84 Smad2/Tgif Embryos………………………………………… 4.2.4 Molecular Analysis of Smad2/Tgif Embryos………………. 87 4.2.5 Sensitivity of Smad2/Tgif Embryos to Retinoic Acid……... 89 4.3 Conclusions…………………...………………………………………. 90 4.4 Materials……………….……………………………………………… 94 viii 4.4.1 Mice and Matings…………………………………………….. 94 4.4.2 Genotyping……………………………………………….…… 95 4.4.3 Histology……………………………………………….……… 95 4.4.4 Whole Mount In Situ Hybridization………………….……… 96 4.4.5 Teratogenic Application of Retinoic Acid………….………. 99 4.4.6 RNA Extraction and Analysis……………………….………. 100 5. Smad2 and Cyp26A1 Mutations Work in Concert to Cause Murine Holoprosencephaly..…………..……………………………………………… 113 5.1 Introduction……………………………………………………………. 113 5.2 Results……………………………………………………...……….… 115 5.2.1 Frequency and Penetrance of Holoprosencephaly in 115 Smad2/Cyp26A1 Embryos….………………………………. 5.2.2 Cyp26A1 and the Smad2 Hypomorphic Allele…………… 117 5.2.3 Smad2, Cyp26A1, and Tgif………………….…………….... 117 5.3 Conclusions…………………………………………………………… 119 5.4 Materials...…………………………………………………………….. 120 5.4.1 Mice and
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