Surface Friction Alters the Agility of a Small Australian Marsupial Rebecca Wheatley1,*, Christofer J
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Parque Estadual Carlos Botelho
PARQUE ESTADUAL CARLOS BOTELHO ANEXOS Fundação Florestal Imagens da Capa: Interior da floresta - Fabio Colombini Esquerda: Beija-flor-preto-e-branco - Fabio Colombini Centro: Bromélia - Fabio Colombini Direita: Cachoeira Água da Vaca - Rogério Zaglobinski Este Plano de Manejo foi elaborado com a Coordenação Executiva do Instituto EKOS Brasil como parte integrante do Termo de Compromisso de Compensação Ambiental (TCCA) pela ampliação da Mina Limeira em Ribeirão Grande, formalizado no Processo SMA 13.603/99 e detalhado no Plano de Trabalho dos Planos de Manejo (Processo 043.176/2005). ÍNDICE Anexo 1. Agenda e Lista de Presença das Oficinas de Planejamento Anexo 2. Bibliografia Anexo 3. Imagens das Unidades de Terreno e Relevo do PECB Anexo 4. Fichas Cadastrais dos Impactos Ambientais da Rodovia SP-139 Anexo 5. Sistema de Descrição da Vegetação Adotado para o Mapeamento Anexo 6. Espécies de Plantas Vasculares com Ocorrência Registrada Anexo 7. Espécies de Invertebrados com Ocorrência Registrada Anexo 8. Espécies de Peixes com Ocorrência Registrada Anexo 9. Espécies da Herpetofauna com Ocorrência Registrada Anexo 10. Espécies da Avifauna com Ocorrência Registrada Anexo 11. Espécies de Grandes Mamíferos com Ocorrência Registrada Anexo 12. Grandes e Médios Mamíferos do Vale do Ribeira e Alto Paranapanema Anexo 13. Espécies de Pequenos Mamíferos e Quirópteros com Ocorrência Registrada Anexo 14. Definição dos Grupos Faunísticos Estudados Anexo 15. Caracterização dos Bairros Localizados no Entorno do PECB Anexo 16. Sítios Arqueológicos Cadastrados no IPHAN Anexo 17. Evidências e Indicações do Patrimônio Cultural Anexo 18. Cenários Históricos Anexo 19. Matriz de Acessos ao Parque Estadual Carlos Botelho Anexo 20. Dados sobre a Passagem de Romeiros na Rodovia SP-139 Anexo 21. -
A New Computing Environment for Modeling Species Distribution
EXPLORATORY RESEARCH RECOGNIZED WORLDWIDE Botany, ecology, zoology, plant and animal genetics. In these and other sub-areas of Biological Sciences, Brazilian scientists contributed with results recognized worldwide. FAPESP,São Paulo Research Foundation, is one of the main Brazilian agencies for the promotion of research.The foundation supports the training of human resources and the consolidation and expansion of research in the state of São Paulo. Thematic Projects are research projects that aim at world class results, usually gathering multidisciplinary teams around a major theme. Because of their exploratory nature, the projects can have a duration of up to five years. SCIENTIFIC OPPORTUNITIES IN SÃO PAULO,BRAZIL Brazil is one of the four main emerging nations. More than ten thousand doctorate level scientists are formed yearly and the country ranks 13th in the number of scientific papers published. The State of São Paulo, with 40 million people and 34% of Brazil’s GNP responds for 52% of the science created in Brazil.The state hosts important universities like the University of São Paulo (USP) and the State University of Campinas (Unicamp), the growing São Paulo State University (UNESP), Federal University of São Paulo (UNIFESP), Federal University of ABC (ABC is a metropolitan region in São Paulo), Federal University of São Carlos, the Aeronautics Technology Institute (ITA) and the National Space Research Institute (INPE). Universities in the state of São Paulo have strong graduate programs: the University of São Paulo forms two thousand doctorates every year, the State University of Campinas forms eight hundred and the University of the State of São Paulo six hundred. -
Wildlife Matters Wildlife Conservancy
australian wildlife matters wildlife conservancy Spring 2009 Pungalina reveals one of Australia’s rarest mammals Carpentarian Pseudantechinus 2 australian saving australia’s threatened wildlife wildlife Pictograph conservancy Welcome to the Spring 2009 edition of Wildlife Matters. As this edition goes to print, we are in the process of fi nalising the acquisition of Bowra (see pages 4-5), a 14,000 the awc mission hectare property located in the heart of the Mulga Lands in Queensland. Bowra will The mission of Australian Wildlife Conservancy be our 21st sanctuary, bringing the AWC network to more than 2.56 million hectares (AWC) is the effective conservation of all (6.3 million acres). Australian animal species and the habitats in While the overall scale of the portfolio is impressive, it is not the number of properties or which they live. To achieve this mission, our hectares that really count. A more accurate measure of the value of the portfolio is the actions are focused on: number of species and ecosystems that occur within the AWC estate. In this respect, • Establishing a network of sanctuaries the statistics are even more impressive – for example, around 80% of all Australian which protect threatened wildlife and terrestrial bird species and over 60% of all terrestrial mammal species occur on one or ecosystems: AWC now manages 20 more of our sanctuaries. sanctuaries covering over 2.56 million The fact that our portfolio captures such a high percentage of Australia’s wildlife species hectares (6.3 million acres). refl ects a deliberate, science-based strategy to ensure that AWC invests in properties • Implementing practical, on-ground of the highest environmental value. -
Digit Evolution in Gymnophthalmid Lizards JULIANA G
Int. J. Dev. Biol. 58: 895-908 (2014) doi: 10.1387/ijdb.140255jg www.intjdevbiol.com Digit evolution in gymnophthalmid lizards JULIANA G. ROSCITO*,1, PEDRO M.S. NUNES2 and MIGUEL T. RODRIGUES1 1Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo-SP and 2Departamento de Zoologia, Centro de Ciências Biológicas, Universidade Federal de Pernambuco, Brazil ABSTRACT The tetrapod limb is a highly diverse structure, and reduction or loss of this structure accounts for many of the limb phenotypes observed within species. Squamate reptiles are one of the many tetrapod lineages in which the limbs have been greatly modified from the pentadactyl generalized pattern, including different degrees of reduction in the number of limb elements to complete limblessness. Even though limb reduction is widespread, the evolutionary and develop- mental mechanisms involved in the formation of reduced limb morphologies remains unclear. In this study, we present an overview of limb morphology within the microteiid lizard group Gymn- ophthalmidae, focusing on digit arrangement. We show that there are two major groups of limb- reduced gymnophthalmids. The first group is formed by lizard-like (and frequently pentadactyl) species, in which minor reductions (such as the loss of 1-2 phalanges mainly in digits I and V) are the rule; these morphologies generally correspond to those seen in other squamates. The second group is formed by species showing more drastic losses, which can include the absence of an ex- ternally distinct limb in adults. We also present the expression patterns of Sonic Hedgehog (Shh) in the greatly reduced fore and hindlimb of a serpentiform gymnophthalmid. -
Introduced Cats Felis Catus Eating a Continental Fauna: Inventory and Traits of Australian Mammal Species Killed
This is the peer reviewed version of the following article: Woolley, L.‐A., Geyle, H.M., Murphy, B.P., Legge, S.M., Palmer, R., Dickman, C.R., Augusteyn, J., Comer, S., Doherty, T.S., Eager, C., Edwards, G., Harley, D.K., Leiper, I., McDonald, P.J., McGregor, H.W., Moseby, K.E., Myers, C., Read, J.L., Riley, J., Stokeld, D., Turpin, J.M. and Woinarski, J.C. (2019) Introduced cats Felis catus eating a continental fauna: inventory and traits of Australian mammal species killed. Mammal Review, Volume 49, Issue 4, Pp 354‐368, which has been published in final form at https://doi.org/10.1111/mam.12167. This article may be used for non‐commercial purposes in accordance with Wiley Terms and Conditions for Self‐Archiving. Introduced cats (Felis catus) eating a continental fauna: inventory and traits of Australian mammal species killed Leigh-Ann Woolley* NESP Threatened Species Recovery Hub, Research Institute for the Environment and Livelihoods, Charles Darwin University, Casuarina, NT 0909, Australia. Email: [email protected] Hayley M. Geyle NESP Threatened Species Recovery Hub, Research Institute for the Environment and Livelihoods, Charles Darwin University, Casuarina, NT 0909, Australia. Email: [email protected] Brett P. Murphy NESP Threatened Species Recovery Hub, Research Institute for the Environment and Livelihoods, Charles Darwin University, Casuarina, NT 0909, Australia. Email: [email protected] Sarah M. Legge NESP Threatened Species Recovery Hub, Centre for Biodiversity and Conservation Science, University of Queensland, St Lucia, Qld 4072, Australia. Email: [email protected] Russell Palmer Department of Biodiversity, Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre, WA 6983, Australia. -
Instituto Amigos Da Reserva Da Biosfera Da Mata Atlântica
INSTITUTO AMIGOS DA RESERVA DA BIOSFERA DA MATA ATLÂNTICA Realização Execução Apoio INSTITUTO AMIGOS DA RESERVA DA BIOSFERA DA MATA ATLÂNTICA PROJETO TCCA/FF MOSAICO PARANAPIACABA 5.1.2. Estudo técnico especializado com indicação de proposta para ampliação, adequação ou criação de áreas naturais protegidas Gleba Lageado - Jeremias Produto II – Relatório Consolidado e Proposta IA-RBMA Março 2014 Realização Execução Apoio INSTITUTO AMIGOS DA RESERVA DA BIOSFERA DA MATA ATLÂNTICA Realização: Fundação para a Conservação e a Produção Florestal do Estado de São Paulo – Fundação Florestal Secretaria de Meio Ambiente do Estado de São Paulo - SMA Execução: Instituto Amigos da Reserva da Biosfera da Mata Atlântica – IA-RBMA Coordenação Geral: Fundação Florestal Jeannette Vieira Geenen – coordenação Kátia Regina Pisciotta Ivaldo José Santos Braz Maria Aparecida Resende Gestores das UC´s do Mosaico de Paranapiacaba: PEI, PETAR, PECB, PENAP, EE Xituê e APA dos Quilombos do Médio Ribeira IA - RBMA Clayton Ferreira Lino – Presidente e Coordenação Geral Nelson Antônio Calil Filho – Coordenação Técnica Nilson Máximo de Oliveira – Coordenação Executiva Realização Execução Apoio INSTITUTO AMIGOS DA RESERVA DA BIOSFERA DA MATA ATLÂNTICA Consultorias Técnicas Especializadas envolvidas nos Projetos: PROJETO MOSAICO PARANAPIACABA – TCCA/FF: Coordenação Geral: Clayton Ferreira Lino – Presidente IA-RBMA Coordenação Técnica: Nelson Antonio Calil Filho Coordenação Temática: Kátia Carolino – Sistema Fundiário José Antonio Basso Scaleante – Uso Público Kátia Mazzei - Geoprocessamento Marcos Melo – Ocupação Antrópica Nelson Antonio Calil Filho – Meio Biótico Nilson Máximo de Oliveira – Mosaicos Sérgio Serafini Júnior – Meio Físico Carlos Eduardo Martins - Meio Físico - Aspectos do Carste Equipe executora: Meio Biótico - Meio Ambiente Consult Msc. Nelson Antônio Calil Filho – coordenador Dr. -
Publications for Mathew Crowther 2021 2020 2019
Publications for Mathew Crowther 2021 Editorial: Trends in Urban Rodent Monitoring and Mitigation: Fardell, L., Bedoya-Perez, M., Dickman, C., Crowther, M., Improving Our Understanding of Population and Disease Pavey, C., Narayan, E. (2021). Are physiological and Ecology, Surveillance and Control. Frontiers in Ecology and behavioural responses to stressors displayed concordantly by Evolution, 7, 522. <a wild urban rodents? Science of Nature, 108(1), 5. <a href="http://dx.doi.org/10.3389/fevo.2019.00522">[More href="http://dx.doi.org/10.1007/s00114-020-01716-8">[More Information]</a> Information]</a> van Eeden, L., Slagle, K., Newsome, T., Crowther, M., Spencer, E., Dickman, C., Greenville, A., Crowther, M., Kutt, Dickman, C., Bruskotter, J. (2020). Exploring nationality and A., Newsome, T. (2021). Carcasses attract invasive species and social identity to explain attitudes toward conservation actions increase artificial nest predation in a desert environment. Global in the United States and Australia. Conservation Biology, 34(5), Ecology and Conservation, 27, e01588. <a 1165-1175. <a href="http://dx.doi.org/10.1016/j.gecco.2021.e01588">[More href="http://dx.doi.org/10.1111/cobi.13488">[More Information]</a> Information]</a> Crowther, M., Dargan, J., Madani, G., Rus, A., Krockenberger, Cairns, K., Nesbitt, B., Laffan, S., Letnic, M., Crowther, M. M., McArthur, C., Moore, B., Lunney, D., Mella, V. (2021). (2020). Geographic hot spots of dingo genetic ancestry in Comparison of three methods of estimating the population size southeastern Australia despite hybridisation with domestic of an arboreal mammal in a fragmented rural landscape. dogs. Conservation Genetics, 21(1), 77-90. <a Wildlife Research, 48(2), 105-114. -
Discovered and Disappearing? Conservation Genetics of a Recently Named Australian Carnivorous Marsupial
This may be the author’s version of a work that was submitted/accepted for publication in the following source: Mutton, Thomas, Fuller, Susan, Tucker, David,& Baker, Andrew (2018) Discovered and disappearing? Conservation genetics of a recently named Australian carnivorous marsupial. Ecology and Evolution, 8(18), pp. 9413-9425. This file was downloaded from: https://eprints.qut.edu.au/123092/ c Consult author(s) regarding copyright matters This work is covered by copyright. Unless the document is being made available under a Creative Commons Licence, you must assume that re-use is limited to personal use and that permission from the copyright owner must be obtained for all other uses. If the docu- ment is available under a Creative Commons License (or other specified license) then refer to the Licence for details of permitted re-use. It is a condition of access that users recog- nise and abide by the legal requirements associated with these rights. If you believe that this work infringes copyright please provide details by email to [email protected] License: Creative Commons: Attribution 2.5 Notice: Please note that this document may not be the Version of Record (i.e. published version) of the work. Author manuscript versions (as Sub- mitted for peer review or as Accepted for publication after peer review) can be identified by an absence of publisher branding and/or typeset appear- ance. If there is any doubt, please refer to the published source. https://doi.org/10.1002/ece3.4376 Received: 6 October 2017 | Revised: 14 March 2018 | Accepted: 15 March 2018 DOI: 10.1002/ece3.4376 ORIGINAL RESEARCH Discovered and disappearing? Conservation genetics of a recently named Australian carnivorous marsupial Thomas Y. -
Vol II Pnunes.Pdf
ii Pedro Murilo Sales Nunes Morfologia hemipeniana dos lagartos microteídeos e suas implicações nas relações filogenéticas da família Gymnophthalmidae (Teiioidea: Squamata) Volume II (Pranchas e Apêndices) São Paulo 2011 iii Nunes, Pedro Murilo Sales Morfologia hemipeniana dos lagartos microteídeos e suas implicações nas relações filogenéticas da família Gymnophthalmidae (Teiioidea: Squamata). Vol. 2 – Pranchas e Apêndices. 184 pp. Tese (Doutorado) – Instituto de Biociências da Universidade de São Paulo. Departamento de Zoologia. 1. Gymnophthalmidae 2. Morfologia 3. Hemipênis I. Universidade de São Paulo. Instituto de Biociências. Departamento de Zoologia. Comissão Julgadora: _______________________ _____________________ Prof. Dr. Prof. Dr. _______________________ _____________________ Prof. Dr. Prof. Dr. ________________________ Prof. Dr. Miguel Trefaut Rodrigues Orientador iv INDICE – VOLUME II 1- PRANCHAS...................................................................................................... 1 2- APÊNDICE 1 – MATERIAL EXAMINADO............................................................. 82 3- APÊNDICE 2 – RODRIGUES ET AL., 2008. A NEW SPECIES OF THE LIZARD GENUS BACHIA (SQUAMATA: GYMNOPHTHALMIDAE) FROM THE CERRADOS OF CENTRAL BRAZIL. ZOOTAXA 1875: 39-50 4- APÊNDICE 3 – RIVAS ET AL., NO PRELO. TAXONOMY, HEMIPENIAL MORPHOLOGY AND NATURAL HISTORY OF TWO POORLY KNOWN SPECIES OF ANADIA (GYMNOPHTHALMIDAE) FROM NORTHERN SOUTH AMERICA. JOURNAL OF HERPETOLOGY, NO PRELO 5- APENDICE 4 – SANCHEZ-PACHECO ET AL. 2011. A NEW SPECIES -
Description and Phylogenetic Relationships of a New Genus and Two New Species of Lizards from Brazilian Amazonia, with Nomenclat
Zootaxa 4000 (4): 401–427 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.4000.4.1 http://zoobank.org/urn:lsid:zoobank.org:pub:9D8F0DD1-B28B-4E43-8817-0E165467D68B Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata) GUARINO R. COLLI1,8, MARINUS S. HOOGMOED2, DAVID C. CANNATELLA3, JOSÉ CASSIMIRO4, JERRIANE OLIVEIRA GOMES2, JOSÉ MÁRIO GHELLERE4, PEDRO M. SALES NUNES5, KÁTIA C. M. PELLEGRINO6, PATRICIA SALERNO7, SERGIO MARQUES DE SOUZA4 & MIGUEL TREFAUT RODRIGUES4 1Departamento de Zoologia, Universidade de Brasília, 70910-900 Brasília, DF, Brazil 2Museu Paraense Emílio Goeldi/CZO, Caixa Postal 399, 66017-970 Belém, PA, Brazil 3The University of Texas at Austin, Section of Integrative Biology, 1 University Station C0930, 78712, Austin, Texas, USA 4Universidade de São Paulo, Instituto de Biociências, Departamento de Zoologia, Caixa Postal 11.461, 05422-970, São Paulo, SP, Brazil 5Universidade Federal de Pernambuco, Centro de Ciências Biológicas, Departamento de Zoologia, Av. Professor Moraes Rego, s/n. Cidade Universitária CEP 50670-901, Recife, PE, Brazil 6Universidade Federal de São Paulo, Departamento de Ciências Biológicas, Rua Prof. Artur Riedel, 275, 09972-270, Diadema, SP, Brazil 7Department of Biology, Colorado State University, 80523, Fort Collins, CO, USA 8Corresponding author. E-mail: [email protected] Abstract We describe a new genus and two new species of gymnophthalmid lizards based on specimens collected from Brazilian Amazonia, mostly in the "arc of deforestation". -
Living with Fire: Ecology and Genetics of the Dasyurid Mammal Dasykaluta Rosamondae
Living with fire: Ecology and genetics of the dasyurid mammal Dasykaluta rosamondae Genevieve Louise Tavani Hayes Bachelor of Science (Wildlife Management) Hons This thesis is presented for the degree of Doctor of Philosophy of The University of Western Australia School of Biological Sciences 2018 Thesis Declaration I, Genevieve Louise Tavani Hayes, certify that: This thesis has been substantially accomplished during enrolment in the degree. This thesis does not contain material which has been accepted for the award of any other degree or diploma in my name, in any university or other tertiary institution. No part of this work will, in the future, be used in a submission in my name, for any other degree or diploma in any university or other tertiary institution without the prior approval of The University of Western Australia and where applicable, any partner institution responsible for the joint-award of this degree. This thesis does not contain any material previously published or written by another person, except where due reference has been made in the text. The work(s) are not in any way a violation or infringement of any copyright, trademark, patent, or other rights whatsoever of any person. The research involving animal data reported in this thesis was assessed and approved by The University of Western Australia Animal Ethics Committee. Approval #: RA/3/100/1235. The following approvals were obtained prior to commencing the relevant work described in this thesis: Health and Safety Induction, Permission to Use Animals (PUA), Program in Animal Welfare, Ethics and Science (PAWES), Department of Parks and Wildlife Regulation 4: Permission to enter DPaW lands and/or waters for the purpose of undertaking research (licence numbers: CE004035 and CE004508) and Department of Parks and Wildlife Regulation 17: Licence to take fauna for scientific purposes (licence numbers: SF009353 and SF009924).