Road-Edge Effects on Herpetofauna in a Lowland Amazonian Rainforest
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Gardner, Michael George. Breakdown of Phylogenetic Signal: a Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species
PUBLISHED VERSION Meglécz, Emese; Nève, Gabriel; Biffin, Edward Sturt; Gardner, Michael George. Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model Eukaryote species. PLoS ONE, 2012; 7(7):e40861 Copyright: © 2012 Meglécz et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. PERMISSIONS http://www.plosone.org/static/policies.action#copyright 3. Copyright and License Policies Open access agreement. Upon submission of an article, its authors are asked to indicate their agreement to abide by an open access Creative Commons license (CC-BY). Under the terms of this license, authors retain ownership of the copyright of their articles. However, the license permits any user to download, print out, extract, reuse, archive, and distribute the article, so long as appropriate credit is given to the authors and source of the work. The license ensures that the authors' article will be available as widely as possible and that the article can be included in any scientific archive. Open access agreement: US government authors. Papers authored by one or more US government employees are not copyrighted, but are licensed under a Creative Commons public domain license (CC0), which allows unlimited distribution and reuse of the article for any lawful purpose. Authors should read about CC-BY or CC0 before submitting papers. Archiving in PubMed Central. Upon publication, PLoS also deposits all articles in PubMed Central. This complies with the policies of funding agencies, such as the NIH in the USA, the Wellcome Trust, and the Research Councils in the UK, and the Deutsche Forschungsgemeinschaft in Germany, which request or require deposition of the published articles that they fund into publicly available databases. -
Species Diversity and Conservation Status of Amphibians in Madre De Dios, Southern Peru
Herpetological Conservation and Biology 4(1):14-29 Submitted: 18 December 2007; Accepted: 4 August 2008 SPECIES DIVERSITY AND CONSERVATION STATUS OF AMPHIBIANS IN MADRE DE DIOS, SOUTHERN PERU 1,2 3 4,5 RUDOLF VON MAY , KAREN SIU-TING , JENNIFER M. JACOBS , MARGARITA MEDINA- 3 6 3,7 1 MÜLLER , GIUSEPPE GAGLIARDI , LILY O. RODRÍGUEZ , AND MAUREEN A. DONNELLY 1 Department of Biological Sciences, Florida International University, 11200 SW 8th Street, OE-167, Miami, Florida 33199, USA 2 Corresponding author, e-mail: [email protected] 3 Departamento de Herpetología, Museo de Historia Natural de la Universidad Nacional Mayor de San Marcos, Avenida Arenales 1256, Lima 11, Perú 4 Department of Biology, San Francisco State University, 1600 Holloway Avenue, San Francisco, California 94132, USA 5 Department of Entomology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, California 94118, USA 6 Departamento de Herpetología, Museo de Zoología de la Universidad Nacional de la Amazonía Peruana, Pebas 5ta cuadra, Iquitos, Perú 7 Programa de Desarrollo Rural Sostenible, Cooperación Técnica Alemana – GTZ, Calle Diecisiete 355, Lima 27, Perú ABSTRACT.—This study focuses on amphibian species diversity in the lowland Amazonian rainforest of southern Peru, and on the importance of protected and non-protected areas for maintaining amphibian assemblages in this region. We compared species lists from nine sites in the Madre de Dios region, five of which are in nationally recognized protected areas and four are outside the country’s protected area system. Los Amigos, occurring outside the protected area system, is the most species-rich locality included in our comparison. -
Bibliography and Scientific Name Index to Amphibians
lb BIBLIOGRAPHY AND SCIENTIFIC NAME INDEX TO AMPHIBIANS AND REPTILES IN THE PUBLICATIONS OF THE BIOLOGICAL SOCIETY OF WASHINGTON BULLETIN 1-8, 1918-1988 AND PROCEEDINGS 1-100, 1882-1987 fi pp ERNEST A. LINER Houma, Louisiana SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE NO. 92 1992 SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE The SHIS series publishes and distributes translations, bibliographies, indices, and similar items judged useful to individuals interested in the biology of amphibians and reptiles, but unlikely to be published in the normal technical journals. Single copies are distributed free to interested individuals. Libraries, herpetological associations, and research laboratories are invited to exchange their publications with the Division of Amphibians and Reptiles. We wish to encourage individuals to share their bibliographies, translations, etc. with other herpetologists through the SHIS series. If you have such items please contact George Zug for instructions on preparation and submission. Contributors receive 50 free copies. Please address all requests for copies and inquiries to George Zug, Division of Amphibians and Reptiles, National Museum of Natural History, Smithsonian Institution, Washington DC 20560 USA. Please include a self-addressed mailing label with requests. INTRODUCTION The present alphabetical listing by author (s) covers all papers bearing on herpetology that have appeared in Volume 1-100, 1882-1987, of the Proceedings of the Biological Society of Washington and the four numbers of the Bulletin series concerning reference to amphibians and reptiles. From Volume 1 through 82 (in part) , the articles were issued as separates with only the volume number, page numbers and year printed on each. Articles in Volume 82 (in part) through 89 were issued with volume number, article number, page numbers and year. -
The Reptile Collection of the Museu De Zoologia, Pecies
Check List 9(2): 257–262, 2013 © 2013 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution The Reptile Collection of the Museu de Zoologia, PECIES S Universidade Federal da Bahia, Brazil OF Breno Hamdan 1,2*, Daniela Pinto Coelho 1 1, Eduardo José dos Reis Dias3 ISTS 1 L and Rejâne Maria Lira-da-Silva , Annelise Batista D’Angiolella 40170-115, Salvador, BA, Brazil. 1 Universidade Federal da Bahia, Instituto de Biologia, Departamento de Zoologia, Núcleo Regional de Ofiologia e Animais Peçonhentos. CEP Sala A0-92 (subsolo), Laboratório de Répteis, Ilha do Fundão, Av. Carlos Chagas Filho, N° 373. CEP 21941-902. Rio de Janeiro, RJ, Brazil. 2 Programa de Pós-Graduação em Zoologia, Museu Nacional/UFRJ. Universidade Federal do Rio de Janeiro Centro de Ciências da Saúde, Bloco A, Carvalho. CEP 49500-000. Itabaian, SE, Brazil. * 3 CorrUniversidadeesponding Federal author. de E-mail: Sergipe, [email protected] Departamento de Biociências, Laboratório de Biologia e Ecologia de Vertebrados (LABEV), Campus Alberto de Abstract: to its history. The Reptile Collection of the Museu de Zoologia from Universidade Federal da Bahia (CRMZUFBA) has 5,206 specimens and Brazilian 185 species scientific (13 collections endemic to represent Brazil and an 9important threatened) sample with of one the quarter country’s of biodiversitythe known reptile and are species a testament listed in Brazil, from over 175 municipalities. Although the CRMZUFBA houses species from all Brazilian biomes there is a strong regional presence. Knowledge of the species housed in smaller collections could avoid unrepresentative species descriptions and provide information concerning intraspecific variation, ecological features and geographic coverage. -
Etar a Área De Distribuição Geográfica De Anfíbios Na Amazônia
Universidade Federal do Amapá Pró-Reitoria de Pesquisa e Pós-Graduação Programa de Pós-Graduação em Biodiversidade Tropical Mestrado e Doutorado UNIFAP / EMBRAPA-AP / IEPA / CI-Brasil YURI BRENO DA SILVA E SILVA COMO A EXPANSÃO DE HIDRELÉTRICAS, PERDA FLORESTAL E MUDANÇAS CLIMÁTICAS AMEAÇAM A ÁREA DE DISTRIBUIÇÃO DE ANFÍBIOS NA AMAZÔNIA BRASILEIRA MACAPÁ, AP 2017 YURI BRENO DA SILVA E SILVA COMO A EXPANSÃO DE HIDRE LÉTRICAS, PERDA FLORESTAL E MUDANÇAS CLIMÁTICAS AMEAÇAM A ÁREA DE DISTRIBUIÇÃO DE ANFÍBIOS NA AMAZÔNIA BRASILEIRA Dissertação apresentada ao Programa de Pós-Graduação em Biodiversidade Tropical (PPGBIO) da Universidade Federal do Amapá, como requisito parcial à obtenção do título de Mestre em Biodiversidade Tropical. Orientador: Dra. Fernanda Michalski Co-Orientador: Dr. Rafael Loyola MACAPÁ, AP 2017 YURI BRENO DA SILVA E SILVA COMO A EXPANSÃO DE HIDRELÉTRICAS, PERDA FLORESTAL E MUDANÇAS CLIMÁTICAS AMEAÇAM A ÁREA DE DISTRIBUIÇÃO DE ANFÍBIOS NA AMAZÔNIA BRASILEIRA _________________________________________ Dra. Fernanda Michalski Universidade Federal do Amapá (UNIFAP) _________________________________________ Dr. Rafael Loyola Universidade Federal de Goiás (UFG) ____________________________________________ Alexandro Cezar Florentino Universidade Federal do Amapá (UNIFAP) ____________________________________________ Admilson Moreira Torres Instituto de Pesquisas Científicas e Tecnológicas do Estado do Amapá (IEPA) Aprovada em de de , Macapá, AP, Brasil À minha família, meus amigos, meu amor e ao meu pequeno Sebastião. AGRADECIMENTOS Agradeço a CAPES pela conceção de uma bolsa durante os dois anos de mestrado, ao Programa de Pós-Graduação em Biodiversidade Tropical (PPGBio) pelo apoio logístico durante a pesquisa realizada. Obrigado aos professores do PPGBio por todo o conhecimento compartilhado. Agradeço aos Doutores, membros da banca avaliadora, pelas críticas e contribuições construtivas ao trabalho. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Breakdown of Phylogenetic Signal: a Survey of Microsatellite
Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species Emese Meglécz, Gabriel Nève, Ed Biffin, Michael Gardner To cite this version: Emese Meglécz, Gabriel Nève, Ed Biffin, Michael Gardner. Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species. PLoS ONE, Public Library of Science, 2012, 7 (7), 10.1371/journal.pone.0040861. hal-01794109 HAL Id: hal-01794109 https://hal-amu.archives-ouvertes.fr/hal-01794109 Submitted on 17 May 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species Emese Megle´ cz1,2*, Gabriel Ne`ve1,2, Ed Biffin3, Michael G. Gardner2,3,4 1 IMBE UMR 7263 CNRS IRD, Aix-Marseille University, Marseille, France, 2 School of Biological Sciences, Flinders University, Adelaide, Australia, 3 Australian Centre for Evolutionary Biology and Biodiversity, School of Earth and Environmental Science, University of Adelaide, Adelaide, Australia, 4 Evolutionary Biology Unit, South Australian Museum, Adelaide, Australia Abstract Microsatellites are ubiquitous in Eukaryotic genomes. -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their -
Antipredator Mechanisms of Post-Metamorphic Anurans: a Global Database and Classification System
Utah State University DigitalCommons@USU Ecology Center Publications Ecology Center 5-1-2019 Antipredator Mechanisms of Post-Metamorphic Anurans: A Global Database and Classification System Rodrigo B. Ferreira Utah State University Ricardo Lourenço-de-Moraes Universidade Estadual de Maringá Cássio Zocca Universidade Vila Velha Charles Duca Universidade Vila Velha Karen H. Beard Utah State University Edmund D. Brodie Jr. Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/eco_pubs Part of the Ecology and Evolutionary Biology Commons Recommended Citation Ferreira, R.B., Lourenço-de-Moraes, R., Zocca, C. et al. Behav Ecol Sociobiol (2019) 73: 69. https://doi.org/ 10.1007/s00265-019-2680-1 This Article is brought to you for free and open access by the Ecology Center at DigitalCommons@USU. It has been accepted for inclusion in Ecology Center Publications by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. 1 Antipredator mechanisms of post-metamorphic anurans: a global database and 2 classification system 3 4 Rodrigo B. Ferreira1,2*, Ricardo Lourenço-de-Moraes3, Cássio Zocca1, Charles Duca1, Karen H. 5 Beard2, Edmund D. Brodie Jr.4 6 7 1 Programa de Pós-Graduação em Ecologia de Ecossistemas, Universidade Vila Velha, Vila Velha, ES, 8 Brazil 9 2 Department of Wildland Resources and the Ecology Center, Utah State University, Logan, UT, United 10 States of America 11 3 Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais, Universidade Estadual 12 de Maringá, Maringá, PR, Brazil 13 4 Department of Biology and the Ecology Center, Utah State University, Logan, UT, United States of 14 America 15 16 *Corresponding author: Rodrigo B. -
Spindly Leg Syndrome, a Review by Ed Kowalski Photos © Ed Kowalski
Director’s Welcome The Magazine of Tree Walkers International Road to Stewardship There is a peculiar human drive to RON SKYLSTAD organize and categorize, and in the Editor conservation world it is no different. © Jason Brown When we first aligned ourselves organizationally with our goals at ED KOWALSKI TWI, we examined the individuals and organizations involved in NATHANIEL PAULL our corner of the amphibian conservation effort and looked for a Assistant Editors structure that would reflect the organization’s ethos. Eventually, we settled on “stewards” working as part of an amphibian “network.” And so, our loose grouping of captive amphibian keepers became the MARCOS OSORNO Amphibian Steward Network (ASN). Executive Director As we move forward, I ask for your help in the stewardship of two wonderful, interrelated things. First and foremost, in the continued BRENT L. BROCK care and conservation of amphibians and their habitat. In TWI, we Program Director all share a connection to our natural world through amphibians. Those who keep amphibians in captivity maintain a window into a natural habitat under immense pressures. This connection to nature MISSION STATEMENT is vital to maintaining a conservation ethos, and I am proud to be Tree Walkers International supports the part of a community through a wonderful hobby that is steeped protection, conservation, and restoration of in ethical traditions and perennially introspective in regards to its wild amphibian populations through hands-on future. action both locally and internationally. Next, I ask for your help in stewardship of the network itself. We foster personal relationships between people and nature by providing opportunities TWI and ASN are volunteer driven projects. -
Anura: Craugastoridae) with the Description of a New Species from Colombia
Acta Herpetologica 11(1): 31-45, 2016 DOI: 10.13128/Acta_Herpetol-16434 Molecular phylogenetics of the Pristimantis lacrimosus species group (Anura: Craugastoridae) with the description of a new species from Colombia Mauricio Rivera-Correa, Juan M. Daza* Grupo Herpetológico de Antioquia, Instituto de Biología, Universidad de Antioquia, Calle 67 # 53–108, Bloque 7–121, A.A. 1226, Medellín, Colombia. *Correspondig author. E-mail: [email protected] Submitted on 2015, 17th July; revised on 2015, 11thNovember; accepted on 2015, 16th November Editor: Adriana Bellati Abstract. The Pristimantis lacrimosus species group, with 24 species distributed in the Neotropics, is a group of arbo- real frogs commonly inhabiting bromeliads. Previous studies have claimed the group to be monophyletic but few spe- cies have been included in phylogenetic analyses. In this paper, we included five additional species from the northern Andes in Colombia and tested the monophyly of this phenetic group using genetic data under a Bayesian approach. Our results show that the P. lacrimosus group represents two distant and unrelated clades. Clade “A” is endemic to Colombia while Clade “B” encompasses species distributed in Central America, Ecuador and Peru. For the first time, we reveal the phylogenetic position of P. boulengeri and a new species is described. The new taxon is most closely related to P. brevifrons from southwestern Colombia with a genetic distance of 4.3% for 16S and 10.6% for COI. Our results suggest, one more time, that morphological similarity among species in the most diverse vertebrate genus not necessarily agree with its evolutionary history and that more effort in alpha taxonomy needs to be done in order to understand the tremendous radiation of this lineage in the Neotropics. -
Guía Dinámica De Los Anfibios Del Bosque Húmedo Tropical Amazónico
guía dinámica de los anfibios del bosque húmedo tropical amazónico santiago ron coordinador editorial Lista de especies Número de especies: 182 Anura Hemiphractidae Gastrotheca longipes, Rana marsupial de Pastaza Hemiphractus proboscideus, Rana de cabeza triangular de Sumaco Hemiphractus scutatus, Rana de cabeza triangular cornuda incubadora Hemiphractus bubalus, Rana de cabeza triangular de Ecuador Hemiphractus helioi, Rana de cabeza triangular del Cuzco Bufonidae Atelopus spumarius, Jambato amazónico Rhaebo ecuadorensis, Sapo gigante ecuatoriano Rhaebo guttatus, Sapo gigante de Cuyabeno Rhinella marina, Sapo de la caña Rhinella festae, Sapo del Valle de Santiago Rhinella ceratophrys, Sapo cornudo termitero Rhinella roqueana, Sapo de Roque Rhinella margaritifera, Sapo común sudamericano Rhinella proboscidea, Sapo hocicudo Rhinella dapsilis, Sapo orejón Rhinella poeppigii, Sapo de Monobamba Amazophrynella minuta, Sapo diminuto de hojarasca Centrolenidae Cochranella resplendens, Rana de cristal resplandeciente Hyalinobatrachium iaspidiense, Rana de cristal de Yuruani Hyalinobatrachium munozorum, Rana de cristal del Napo Hyalinobatrachium ruedai, Rana de cristal de Rueda Hyalinobatrachium yaku, Rana de cristal yaku Nymphargus laurae, Rana de cristal de Laura Nymphargus mariae, Rana de cristal de María Espadarana durrellorum, Rana de cristal de Jambué Teratohyla midas, Rana de cristal del Aguarico Teratohyla amelie, Rana de cristal de Amelie Vitreorana ritae, Rana de cristal de puntos negros Ceratophryidae Ceratophrys cornuta, Sapo bocón