Natural History Notes and Range Extension of Loxopholis Ferreirai
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Gardner, Michael George. Breakdown of Phylogenetic Signal: a Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species
PUBLISHED VERSION Meglécz, Emese; Nève, Gabriel; Biffin, Edward Sturt; Gardner, Michael George. Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model Eukaryote species. PLoS ONE, 2012; 7(7):e40861 Copyright: © 2012 Meglécz et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. PERMISSIONS http://www.plosone.org/static/policies.action#copyright 3. Copyright and License Policies Open access agreement. Upon submission of an article, its authors are asked to indicate their agreement to abide by an open access Creative Commons license (CC-BY). Under the terms of this license, authors retain ownership of the copyright of their articles. However, the license permits any user to download, print out, extract, reuse, archive, and distribute the article, so long as appropriate credit is given to the authors and source of the work. The license ensures that the authors' article will be available as widely as possible and that the article can be included in any scientific archive. Open access agreement: US government authors. Papers authored by one or more US government employees are not copyrighted, but are licensed under a Creative Commons public domain license (CC0), which allows unlimited distribution and reuse of the article for any lawful purpose. Authors should read about CC-BY or CC0 before submitting papers. Archiving in PubMed Central. Upon publication, PLoS also deposits all articles in PubMed Central. This complies with the policies of funding agencies, such as the NIH in the USA, the Wellcome Trust, and the Research Councils in the UK, and the Deutsche Forschungsgemeinschaft in Germany, which request or require deposition of the published articles that they fund into publicly available databases. -
The Reptile Collection of the Museu De Zoologia, Pecies
Check List 9(2): 257–262, 2013 © 2013 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution The Reptile Collection of the Museu de Zoologia, PECIES S Universidade Federal da Bahia, Brazil OF Breno Hamdan 1,2*, Daniela Pinto Coelho 1 1, Eduardo José dos Reis Dias3 ISTS 1 L and Rejâne Maria Lira-da-Silva , Annelise Batista D’Angiolella 40170-115, Salvador, BA, Brazil. 1 Universidade Federal da Bahia, Instituto de Biologia, Departamento de Zoologia, Núcleo Regional de Ofiologia e Animais Peçonhentos. CEP Sala A0-92 (subsolo), Laboratório de Répteis, Ilha do Fundão, Av. Carlos Chagas Filho, N° 373. CEP 21941-902. Rio de Janeiro, RJ, Brazil. 2 Programa de Pós-Graduação em Zoologia, Museu Nacional/UFRJ. Universidade Federal do Rio de Janeiro Centro de Ciências da Saúde, Bloco A, Carvalho. CEP 49500-000. Itabaian, SE, Brazil. * 3 CorrUniversidadeesponding Federal author. de E-mail: Sergipe, [email protected] Departamento de Biociências, Laboratório de Biologia e Ecologia de Vertebrados (LABEV), Campus Alberto de Abstract: to its history. The Reptile Collection of the Museu de Zoologia from Universidade Federal da Bahia (CRMZUFBA) has 5,206 specimens and Brazilian 185 species scientific (13 collections endemic to represent Brazil and an 9important threatened) sample with of one the quarter country’s of biodiversitythe known reptile and are species a testament listed in Brazil, from over 175 municipalities. Although the CRMZUFBA houses species from all Brazilian biomes there is a strong regional presence. Knowledge of the species housed in smaller collections could avoid unrepresentative species descriptions and provide information concerning intraspecific variation, ecological features and geographic coverage. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Breakdown of Phylogenetic Signal: a Survey of Microsatellite
Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species Emese Meglécz, Gabriel Nève, Ed Biffin, Michael Gardner To cite this version: Emese Meglécz, Gabriel Nève, Ed Biffin, Michael Gardner. Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species. PLoS ONE, Public Library of Science, 2012, 7 (7), 10.1371/journal.pone.0040861. hal-01794109 HAL Id: hal-01794109 https://hal-amu.archives-ouvertes.fr/hal-01794109 Submitted on 17 May 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species Emese Megle´ cz1,2*, Gabriel Ne`ve1,2, Ed Biffin3, Michael G. Gardner2,3,4 1 IMBE UMR 7263 CNRS IRD, Aix-Marseille University, Marseille, France, 2 School of Biological Sciences, Flinders University, Adelaide, Australia, 3 Australian Centre for Evolutionary Biology and Biodiversity, School of Earth and Environmental Science, University of Adelaide, Adelaide, Australia, 4 Evolutionary Biology Unit, South Australian Museum, Adelaide, Australia Abstract Microsatellites are ubiquitous in Eukaryotic genomes. -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their -
Herpetology at the Isthmus Species Checklist
Herpetology at the Isthmus Species Checklist AMPHIBIANS BUFONIDAE true toads Atelopus zeteki Panamanian Golden Frog Incilius coniferus Green Climbing Toad Incilius signifer Panama Dry Forest Toad Rhaebo haematiticus Truando Toad (Litter Toad) Rhinella alata South American Common Toad Rhinella granulosa Granular Toad Rhinella margaritifera South American Common Toad Rhinella marina Cane Toad CENTROLENIDAE glass frogs Cochranella euknemos Fringe-limbed Glass Frog Cochranella granulosa Grainy Cochran Frog Espadarana prosoblepon Emerald Glass Frog Sachatamia albomaculata Yellow-flecked Glass Frog Sachatamia ilex Ghost Glass Frog Teratohyla pulverata Chiriqui Glass Frog Teratohyla spinosa Spiny Cochran Frog Hyalinobatrachium chirripoi Suretka Glass Frog Hyalinobatrachium colymbiphyllum Plantation Glass Frog Hyalinobatrachium fleischmanni Fleischmann’s Glass Frog Hyalinobatrachium valeroi Reticulated Glass Frog Hyalinobatrachium vireovittatum Starrett’s Glass Frog CRAUGASTORIDAE robber frogs Craugastor bransfordii Bransford’s Robber Frog Craugastor crassidigitus Isla Bonita Robber Frog Craugastor fitzingeri Fitzinger’s Robber Frog Craugastor gollmeri Evergreen Robber Frog Craugastor megacephalus Veragua Robber Frog Craugastor noblei Noble’s Robber Frog Craugastor stejnegerianus Stejneger’s Robber Frog Craugastor tabasarae Tabasara Robber Frog Craugastor talamancae Almirante Robber Frog DENDROBATIDAE poison dart frogs Allobates talamancae Striped (Talamanca) Rocket Frog Colostethus panamensis Panama Rocket Frog Colostethus pratti Pratt’s Rocket -
Nematode Parasites of Costa Rican Snakes (Serpentes) with Description of a New Species of Abbreviata (Physalopteridae)
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of 2011 Nematode Parasites of Costa Rican Snakes (Serpentes) with Description of a New Species of Abbreviata (Physalopteridae) Charles R. Bursey Pennsylvania State University - Shenango, [email protected] Daniel R. Brooks University of Toronto, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Bursey, Charles R. and Brooks, Daniel R., "Nematode Parasites of Costa Rican Snakes (Serpentes) with Description of a New Species of Abbreviata (Physalopteridae)" (2011). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 695. https://digitalcommons.unl.edu/parasitologyfacpubs/695 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Comp. Parasitol. 78(2), 2011, pp. 333–358 Nematode Parasites of Costa Rican Snakes (Serpentes) with Description of a New Species of Abbreviata (Physalopteridae) 1,3 2 CHARLES R. BURSEY AND DANIEL R. BROOKS 1 Department of Biology, Pennsylvania State University, Shenango Campus, Sharon, Pennsylvania 16146, U.S.A. (e-mail: -
Reptiles of Ecuador: a Resource-Rich Online Portal, with Dynamic
Offcial journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 13(1) [General Section]: 209–229 (e178). Reptiles of Ecuador: a resource-rich online portal, with dynamic checklists and photographic guides 1Omar Torres-Carvajal, 2Gustavo Pazmiño-Otamendi, and 3David Salazar-Valenzuela 1,2Museo de Zoología, Escuela de Ciencias Biológicas, Pontifcia Universidad Católica del Ecuador, Avenida 12 de Octubre y Roca, Apartado 17- 01-2184, Quito, ECUADOR 3Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad Tecnológica Indoamérica, Machala y Sabanilla EC170301, Quito, ECUADOR Abstract.—With 477 species of non-avian reptiles within an area of 283,561 km2, Ecuador has the highest density of reptile species richness among megadiverse countries in the world. This richness is represented by 35 species of turtles, fve crocodilians, and 437 squamates including three amphisbaenians, 197 lizards, and 237 snakes. Of these, 45 species are endemic to the Galápagos Islands and 111 are mainland endemics. The high rate of species descriptions during recent decades, along with frequent taxonomic changes, has prevented printed checklists and books from maintaining a reasonably updated record of the species of reptiles from Ecuador. Here we present Reptiles del Ecuador (http://bioweb.bio/faunaweb/reptiliaweb), a free, resource-rich online portal with updated information on Ecuadorian reptiles. This interactive portal includes encyclopedic information on all species, multimedia presentations, distribution maps, habitat suitability models, and dynamic PDF guides. We also include an updated checklist with information on distribution, endemism, and conservation status, as well as a photographic guide to the reptiles from Ecuador. -
Ecography ECOG-03593 Tarr, S., Meiri, S., Hicks, J
Ecography ECOG-03593 Tarr, S., Meiri, S., Hicks, J. J. and Algar, A. C. 2018. A biogeographic reversal in sexual size dimorphism along a continental temperature gradient. – Ecography doi: 10.1111/ecog.03593 Supplementary material SUPPLEMENTARY MATERIAL A biogeographic reversal in sexual size dimorphism along a continental temperature gradient Appendix 1: Supplementary Tables and Figures Table A1. Placement of species missing from phylogeny. Species Comment Reference Most closely related to oaxaca and Campbell, J.A., et al. 2016. A new species of Abronia mixteca, most similar to mixteca Abronia cuetzpali (Squamata: Anguidae) from the Sierra Madre del Sur of according to Campbell et al. so add Oaxaca, Mexico. Journal of Herpetology 50: 149-156. as sister to mixteca Anolis alocomyos Both formerly part of tropidolepis, Köhler, G., et al. 2014. Two new species of the Norops & Anolis make a random clade with pachypus complex (Squamata, Dactyloidae) from Costa leditzigorum tropidolepis Rica. Mesoamerican Herpetology 1: 254–280. Part of a clade with microtus and Poe S, Ryan M.J. 2017. Description of two new species Anolis brooksi & ginaelisae so make a random clade similar to Anolis insignis (Squamata: Iguanidae) and Anolis kathydayae with these & brooksi & kathydayae, resurrection of Anolis (Diaphoranolis) brooksi. Amphibian based on Poe & Ryan. & Reptile Conservation 11: 1–16. Part of a clade with aquaticus and Köhler, J.J., et al. 2015. Anolis marsupialis Taylor 1956, a Anolis woodi so make a random clade with valid species from southern Pacific Costa Rica (Reptilia, marsupialis these Squamata, Dactyloidae). Zootaxa 3915111–122 Köhler, G., et al. 2016. Taxonomic revision of the Norops Anolis mccraniei, Formerly part of tropidonotus, so tropidonotus complex (Squamata, Dactyloidae), with the Anolis spilorhipis, split tropidonotus into a random resurrection of N. -
High Prevalence of Haemoparasites in Lizards Parasitol 10: 365-374
An Acad Bras Cienc (2020) 92(2): e20200428 DOI 10.1590/0001-3765202020200428 Anais da Academia Brasileira de Ciências | Annals of the Brazilian Academy of Sciences Printed ISSN 0001-3765 I Online ISSN 1678-2690 www.scielo.br/aabc | www.fb.com/aabcjournal BIOLOGICAL SCIENCES Under the light: high prevalence of Running title: Haemoparasites in haemoparasites in lizards (Reptilia: Squamata) lizards from Central Amazonia Academy Section: Biological Sciences from Central Amazonia revealed by microscopy AMANDA M. PICELLI, ADRIANE C. RAMIRES, GABRIEL S. MASSELI, e20200428 FELIPE A C. PESSOA, LUCIO A. VIANA & IGOR L. KAEFER 92 Abstract: Blood samples from 330 lizards of 19 species were collected to investigate the (2) occurrence of haemoparasites. Samplings were performed in areas of upland (terra- 92(2) fi rme) forest adjacent to Manaus municipality, Amazonas, Brazil. Blood parasites were detected in 220 (66%) lizards of 12 species and comprised four major groups: Apicomplexa (including haemogregarines, piroplasms, and haemosporidians), trypanosomatids, microfi larid nematodes and viral or bacterial organisms. Order Haemosporida had the highest prevalence, with 118 (35%) animals from 11 species. For lizard species, Uranoscodon superciliosus was the most parasitised host, with 103 (87%; n = 118) positive individuals. This species also presented the highest parasite diversity, with the occurrence of six taxa. Despite the diffi culties attributed by many authors regarding the use of morphological characters for taxonomic resolution of haemoparasites, our low- cost approach using light microscopy recorded a high prevalence and diversity of blood parasite taxa in a relatively small number of host species. This report is the fi rst survey of haemoparasites in lizards in the study region. -
Proefschrift Marieke Van Erp 300610
Tilburg University Accessing natural history van Erp, M.G.J. Publication date: 2010 Document Version Publisher's PDF, also known as Version of record Link to publication in Tilburg University Research Portal Citation for published version (APA): van Erp, M. G. J. (2010). Accessing natural history: Discoveries in data cleaning, structuring, and retrieval. TICC Dissertation Series 13. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 26. sep. 2021 Accessing Natural History Discoveries in Data Cleaning, Structuring, and Retrieval proefschrift ter verkrijging van de graad van doctor aan de Universiteit van Tilburg, op gezag van de rector magnificus, prof. dr. Ph. Eijlander, in het openbaar te verdedigen ten overstaan van een door het college voor promoties aangewezen commissie in de aula van de Universiteit op woensdag 30 juni 2010 om 14:15 uur door Maria Godefrida Jacoba van Erp geboren op 18 november 1982 te Breda ii Promotor: Prof. -
Endemism on a Threatened Sky Island
Offcial journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 14(2) [General Section]: 27–46 (e237). Endemism on a threatened sky island: new and rare species of herpetofauna from Cerro Chucantí, Eastern Panama 1,2,3Abel Batista, 2,4,*Konrad Mebert, 2Madian Miranda, 2Orlando Garcés, 2Rogemif Fuentes, and 5Marcos Ponce 1ADOPTA El Bosque PANAMÁ 2Los Naturalistas, P.O. Box 0426-01459 David, Chiriquí, PANAMÁ 3Universidad Autónoma de Chiriquí, Ciudad Universitaria El Cabrero David, Chiriquí, 427, PANAMÁ 4Programa de Pós-graduação em Zoologia, Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, Km 16, 45662-900, Ilhéus, Bahia, BRAZIL 5Museo Herpetológico de Chiriquí, PANAMÁ Abstract.—Cerro Chucantí in the Darién province is the highest peak in the Majé Mountains, an isolated massif in Eastern Panama. In addition to common herpetological species such as the Terraranas, Pristimantis cruentus, and P. caryophyllaceus, rare species such as Pristimantis moro and Strabomantis bufoniformis occur as well. Recent expeditions to Cerro Chucantí revealed a remarkably rich diversity of 41 amphibian (19% of the total in Panama) and 35 reptile (13% of the total in Panama) species, including new and endemic species such as a salamander, Bolitoglossa chucantiensis, a frog Diasporus majeensis, and a snake, Tantilla berguidoi. Here, an up-to-date summary is presented on the herpetological species observed on this sky island (an isolated mountain habitat with endemic species), including several species without defnitive taxonomic allocation, new elevation records, and an analysis of species diversity. Keywords. Amphibians, community, diversity, evaluation, integrative taxonomy, premontane, reptiles, surveys Resumen.—El Cerro Chucantí en la provincia de Darién es el pico más alto de las montañas de la serranía de Majé, un macizo aislado en el este de Panamá.