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Comparative Dissection of Three Giant Genomes: Allium Cepa, Allium Sativum, and Allium Ursinum
International Journal of Molecular Sciences Article Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum Vratislav Peška 1,* , Terezie Mandáková 2 , Veronika Ihradská 1,2,† and Jiˇrí Fajkus 1,2,* 1 Institute of Biophysics, The Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic; [email protected] 2 Mendel Centre for Plant Genomics and Proteomics, CEITEC, Masaryk University, Kamenice 5, CZ-62500 Brno, Czech Republic; [email protected] * Correspondence: [email protected] (V.P.); [email protected] (J.F.); Tel.: +420-541-517-199 (V.P.); +420-549-494-003 (J.F.) † Current address: Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center, Slovak Academy of Sciences, Akademická 2, P.O. Box 39A, 950 07 Nitra, Slovakia. Received: 4 January 2019; Accepted: 2 February 2019; Published: 9 February 2019 Abstract: Knowledge of the fascinating world of DNA repeats is continuously being enriched by newly identified elements and their hypothetical or well-established biological relevance. Genomic approaches can be used for comparative studies of major repeats in any group of genomes, regardless of their size and complexity. Such studies are particularly fruitful in large genomes, and useful mainly in crop plants where they provide a rich source of molecular markers or information on indispensable genomic components (e.g., telomeres, centromeres, or ribosomal RNA genes). Surprisingly, in Allium species, a comprehensive comparative study of repeats is lacking. Here we provide such a study of two economically important species, Allium cepa (onion), and A. sativum (garlic), and their distantly related A. -
Seedling Establishment, Bud Movement, and Subterranean Diversity of Geophilous Systems in Apiaceae
Flora (2002) 197, 385–393 http://www.urbanfischer.de/journals/flora Seedling establishment, bud movement, and subterranean diversity of geophilous systems in Apiaceae Norbert Pütz1* & Ina Sukkau2 1 Institute of Nature Conservation and Environmental Education, University of Vechta, Driverstr. 22, D-49377 Vechta, Germany 2 Institute of Botany, RWTH Aachen, Germany * author for correspondence: e-mail: [email protected] Received: Nov 29, 2001 · Accepted: Jun 10, 2002 Summary Geophilous systems of plants are not only regarded as organs of underground storage. Such systems also undergo a large range of modifications in order to fulfill other ‚cryptical‘ functions, e.g. positioning of innovation buds, vegetative cloning, and vege- tative dispersal. Seedlings should always be the point of departure for any investigation into the structure of geophilous systems. This is because in the ability to survive of geophilous plants it is of primary importance that innovation buds can reach a safe position in the soil by the time the first period hostile to vegetation commences. Our analysis of such systems thus focused on examining the development of 34 species of the Apiaceae, beginning with their germination. Independent of life-form and life-span, all species exhibit noticeable terminal bud movement with the aid of contractile organs. Movement was found to be at least 5 mm, reaching a maximum of 45 mm. All species exhibit a noticeable contraction of the primary root. In most cases the contraction phenomenon also occurs in the hypocotyl, and some species show contraction of their lateral and / or adventitious roots. Analysis of movement shows the functional importance of pulling the inno- vation buds down into the soil. -
New Jan16.2011
Spring 2011 Mail Order Catalog Cistus Nursery 22711 NW Gillihan Road Sauvie Island, OR 97231 503.621.2233 phone 503.621.9657 fax order by phone 9 - 5 pst, visit 10am - 5pm, fax, mail, or email: [email protected] 24-7-365 www.cistus.com Spring 2011 Mail Order Catalog 2 USDA zone: 2 Symphoricarpos orbiculatus ‘Aureovariegatus’ coralberry Old fashioned deciduous coralberry with knock your socks off variegation - green leaves with creamy white edges. Pale white-tinted-pink, mid-summer flowers attract bees and butterflies and are followed by bird friendly, translucent, coral berries. To 6 ft or so in most any normal garden conditions - full sun to part shade with regular summer water. Frost hardy in USDA zone 2. $12 Caprifoliaceae USDA zone: 3 Athyrium filix-femina 'Frizelliae' Tatting fern An unique and striking fern with narrow fronds, only 1" wide and oddly bumpy along the sides as if beaded or ... tatted. Found originally in the Irish garden of Mrs. Frizell and loved for it quirkiness ever since. To only 1 ft tall x 2 ft wide and deciduous, coming back slowly in spring. Best in bright shade or shade where soil is rich. Requires summer water. Frost hardy to -40F, USDA zone 3 and said to be deer resistant. $14 Woodsiaceae USDA zone: 4 Aralia cordata 'Sun King' perennial spikenard The foliage is golden, often with red stems, and dazzling on this big and bold perennial, quickly to 3 ft tall and wide, first discovered in a department store in Japan by nurseryman Barry Yinger. Spikes of aralia type white flowers in summer are followed by purple-black berries. -
Index Seminum Et Sporarum Quae Hortus Botanicus Universitatis Biarmiensis Pro Mutua Commutatione Offert
INDEX SEMINUM ET SPORARUM QUAE HORTUS BOTANICUS UNIVERSITATIS BIARMIENSIS PRO MUTUA COMMUTATIONE OFFERT ИК Е И , я ии ии . .Г. Гя и и ии , ия Biarmiae 2017 Federal State Budgetary Educational Institution of Higher Education «Perm State University», Botanic Garden ______________________________________________________________________________________ , ! 1922 . . .. – .. , .. , .. , . .. , . : , , . 2,7 . 7 500 , , , . . , . , - . . , . . , . , . 1583 . , , , , . , , (--, 1992). ... .. Ш Index Seminum 2017 2 Federal State Budgetary Educational Institution of Higher Education «Perm State University», Botanic Garden ______________________________________________________________________________________ Dear friends of the Botanic Gardens, Dear colleagues! The Botanic Garden of Perm State National Research University was founded in 1922 on the initiative of Professor A.H. Henckel and under his supervision. Many famous botanists: P.A. Sabinin, V.I. Baranov, P.A. Henckel, E.A. Pavskiy made a great contribution to the development of the biological science in the Urals. The Botanic Garden named after Prof. A.H. Henckel is a member of the Regional Council of Botanic Gardens in the Urals and has got a status of the scientific institution with protected territory. Some -
Special-Status Plants and Invasive/Noxious Weeds Technical Report
SACRAMENTO MUNICIPAL UTILITY DISTRICT UPPER AMERICAN RIVER PROJECT (FERC NO. 2101) SPECIAL-STATUS PLANTS AND INVASIVE/NOXIOUS WEEDS TECHNICAL REPORT Prepared by: Devine Tarbell & Associates, Inc. Sacramento, California Prepared for: Sacramento Municipal Utility District Sacramento, California JULY 2004 Sacramento Municipal Utility District Upper American River Project FERC Project No. 2101 TABLE OF CONTENTS Section & Description Page 1.0 INTRODUCTION .............................................................................................................. 1 2.0 BACKGROUND ................................................................................................................ 2 2.1 Special-Status Plants Study Plan ............................................................................ 2 2.2 Invasive/Noxious Weeds Study Plan...................................................................... 3 2.3 Water Year Types................................................................................................... 4 2.4 Agency Requested Information .............................................................................. 5 3.0 METHODS ......................................................................................................................... 5 3.1 Special-Status Plants............................................................................................... 5 3.2 Noxious Weeds ....................................................................................................... 6 4.0 RESULTS .......................................................................................................................... -
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A Cytochrome-P450-Inhibitor *Unless otherwise noted all references are to Duke, James A. 1992. Handbook of phytochemical constituents of GRAS herbs and other economic plants. Boca Raton, FL. CRC Press. Plant # Chemicals Total PPM Acacia farnesiana Huisache; Cassie; Popinac; Sweet Acacia; Opopanax 2 Achillea millefolium Yarrow; Milfoil 1 Acorus calamus Flagroot; Sweetroot; Sweet Calamus; Myrtle Flag; Calamus; Sweetflag 1 384.0 Agastache rugosa 1 Ageratum conyzoides Mexican ageratum 1 Aloysia citrodora Lemon Verbena 1 Alpinia officinarum Lesser Galangal; Chinese Ginger 1 800.0 Alpinia galanga Siamese Ginger; Languas; Greater Galangal 1 24000.0 Ammi majus Bishop's Weed 2 16000.0 Anacardium occidentale Cashew 1 Anethum graveolens Garden Dill; Dill 1 Angelica dahurica Bai Zhi 2 Angelica archangelica Angelica; Wild Parsnip; Garden Angelica 2 5050.0 Apium graveolens Celery 3 Artemisia dracunculus Tarragon 2 141.0 Boronia megastigma Scented Boronia 1 Calamintha nepeta Turkish Calamint 1 Camellia sinensis Tea 2 Cananga odorata Cananga; Ylang-Ylang 1 Capsicum frutescens Tabasco; Cayenne; Chili; Hot Pepper; Spur Pepper; Red Chili 1 35800.0 Capsicum annuum Cherry Pepper; Cone Pepper; Paprika; Bell Pepper; Sweet Pepper; Green Pepper 2 8000.0 Centaurea calcitrapa Star-Thistle 1 Chenopodium album Lambsquarter 1 Cinnamomum verum Ceylon Cinnamon; Cinnamon 1 20320.0 Cinnamomum camphora Camphor; Ho Leaf 1 Cinnamomum aromaticum Cassia Lignea; Chinese Cassia; Chinesischer Zimtbaum (Ger.); Canela de la China (Sp.); 1 Saigon Cinnamon; Chinazimt (Ger.); Kashia-Keihi -
Biological Value and Morphological Traits of Pollen of Selected Garlic Species Allium L
ACTA AGROBOTANICA Vol. 60 (1): 67 71 2007 BIOLOGICAL VALUE AND MORPHOLOGICAL TRAITS OF POLLEN OF SELECTED GARLIC SPECIES ALLIUM L. Beata Żuraw Department of Botany, Agricultural University, 20 950 Lublin, Akademicka str. 15 e mail: [email protected] Received: 20.04.2007 Summary (A. cernuum), violet (A. aflatunense) to purple (A. atro- This study was conducted in the years 1997 1999. From purpureum). Some species form blue (A. caeruleum) or the collection of the UMCS Botanical Garden, nine species of yellow flowers (A. moly, A. flavum). Most species are garlic were selected (A. aflatunense, A. atropurpureum, A. caeru- grown for cut flowers or as ornamentals on flower beds leum, A. cernuum, A. ledebourianum, A. lineare, A. sphaeroce- due to winter hardiness and low nutritional requirements phalon, A. victorialis, A. ursinum) and one subspecies (A. scoro- (K r z y m i ń s k a , 2003). Flower easily set seeds. Seeds doprasum subsp. jajlae). Pollen grain viability was evaluated on should be sown to the seed-bed in the autumn or directly microscopic slides stained with acetocarmine, germination abi to the soil in the spring (K amenetsky and Gutter- lity on the agar medium and measurements of grains were made m a n , 2000). The easiest way of propagation is the di- on glycerin jelly slides. The studied species were characterized vision of adventitious bulbs that should be set from the by high pollen viability (87 99%) what indicates the great value middle of September up to middle of November. of garlic flowers as a source of protein rich feed for honey bee Flowers of species from the genus L. -
Isolation and Identification of Plant Growth Promoting Rhizobacteria On
Isolation and Identification of Plant Growth Promoting Rhizobacteria on Allium caeruleum Jordan Caine Lena Hunt S08 10 April 2013 Introduction Plant growth promoting rhizobacteria (PGPRs) are bacteria that live on the root and root hairs of plants. PGPRs either directly promote plant growth or provide protection against harmful environmental factors (Lugtenberg, et. al., 2009.) Some PGPRs are known as biofertilizers, and can increase the concentration of mineral nutrients and efficiency of nutrient uptake for plants (Vessey, 2002.) For limiting nutrients such as Nitrogen and Phosphorus, these bacteria can provide greater access to usable nutrients either by fixing nitrogen or solubilizing phosphorus (Orhan, et. al., 2006.) Other PGPRs help the plant by controlling pathogenic organisms such a fungi (Lugtenberg, et. al. 2009.) PGPRs also gain nutrients from the plant to survive, creating a symbiotic relationship. The Allium caeruleum plant was chosen to examine the PGPRs present on the root system. This plant was chosen because it is abundant on the Loyola Marymount campus, has an extensive root system and is relevant to the nearby habitat. A. caeruleum is a species of onion, commonly known as the blue globe onion; it is native to California and produces clusters of bright blue flowers. The blue globe onion is a perennial monocot. The techniques chosen to examine the PGPRs of the A. caeruleum included plating the isolated bacteria on certain medias that would indicate for specific PGPRs. The plates would test for plant growth promoting properties including phosphate solubilization, siderophore production, IAA production, cellulase production, and ACC deaminase activity. The sixteen initial isolates were narrowed down to three for continued study. -
Peucedanum Ostruthium Inhibits E-Selectin and VCAM-1 Expression in Endothelial Cells Through Interference with NF-Κb Signaling
biomolecules Article Peucedanum ostruthium Inhibits E-Selectin and VCAM-1 Expression in Endothelial Cells through Interference with NF-κB Signaling Christoph Lammel 1, Julia Zwirchmayr 2 , Jaqueline Seigner 1 , Judith M. Rollinger 2,* and Rainer de Martin 1 1 Department of Vascular Biology and Thrombosis Research, Medical University of Vienna, Schwarzspanierstaße 17, 1090 Vienna, Austria; [email protected] (C.L.); [email protected] (J.S.); [email protected] (R.d.M.) 2 Department of Pharmacognosy, Faculty of Life Sciences, University of Vienna, Althanstraße 14, 1090 Vienna, Austria; [email protected] * Correspondence: [email protected]; Tel.: +43-1-4277-55255; Fax: +43-1-4277-855255 Received: 5 June 2020; Accepted: 18 August 2020; Published: 21 August 2020 Abstract: Twenty natural remedies traditionally used against different inflammatory diseases were probed for their potential to suppress the expression of the inflammatory markers E-selectin and VCAM-1 in a model system of IL-1 stimulated human umbilical vein endothelial cells (HUVEC). One third of the tested extracts showed in vitro inhibitory effects comparable to the positive control oxozeaenol, an inhibitor of TAK1. Among them, the extract derived from the roots and rhizomes of Peucedanum ostruthium (i.e., Radix Imperatoriae), also known as masterwort, showed a pronounced and dose-dependent inhibitory effect. Reporter gene analysis demonstrated that inhibition takes place on the transcriptional level and involves the transcription factor NF-κB. A more detailed analysis revealed that the P. ostruthium extract (PO) affected the phosphorylation, degradation, and resynthesis of IκBα, the activation of IKKs, and the nuclear translocation of the NF-κB subunit RelA. -
Effects of Breed of Sheep and Dietary Onions on Bitterweed (Hymenoxys Odorata DC) Toxicity
Volume 29, 2014 - December Effects of Breed of Sheep and Dietary Onions on Bitterweed (Hymenoxys odorata DC) Toxicity E. S. Campbell1,3, T. R. Whitney2, C. A. Taylor, Jr.1, N. E. Garza1 1 Texas A&M AgriLife Research Center, Sonora, TX 76950 2 Texas A&M AgriLife Research and Extension Center, San Angelo, TX 76901 3 Corresponding author: [email protected] ACKNOWLEDGMENT Partial support for the research was provided by the Texas Food and Fiber Commission/ Texas Department of Agriculture, Austin, TX. Summary isonitrogenous diets consisted of alfalfa elicited a breed effect (P< 0.05) for pellets to provide 32 g DM/kg BW per serum measurements reflective of bitter- Bitterweed (Hymenoxys odorata day. Animals were group-fed onions for a weed toxicity; bilirubin, gamma-glu- DC) toxicity is a major cause of death 10-d preconditioning period, then tamyltransferase (GGT) and AST con- losses in Rambouillet sheep. This study penned and fed individually for study. centrations were greater (P ≤ 0.001) for compared the susceptibility of two Individual onion feeding commenced on DBBs than for Rambouillets. The AST, breeds [Rambouillet and Dorper × Bar- d 0 and continued through d 7. On d 3 of bilirubin, creatinine, GGT, and SUN bados Blackbelly (DBB)], of wool and onion feeding, lambs were dosed with an were clinically high for all treatments, hair sheep lambs to bitterweed toxicosis; aqueous slurry of dried bitterweed (0.25 including controls, indicating acute tox- and the potential for cull onions (Allium percent of BW, DM-basis) daily through icity. Feed refusals did not differ among cepa) to mitigate bitterweed toxicity. -
Many-Uses-Of-Udo-PM83.Pdf
THE MANY USES FAMILY: Araliaceae CHINESE: Shi Yong Tu Dang Gui ENGLISH: Japanese Asparagus, Udo of FRENCH: Aralie à Feuilles Cordées GERMAN: Japanische Bergangelika JAPANESE: Udo Stephen Barstow invites you to savour a remarkableU DOwild edible, Udo ralia cordata or udo is grown in many countries and deserves to be much more popular in the West. For what is basically Aa wild plant, it is remarkably productive, and the highest yielding vegetable that I have grown. It is a herbaceous perennial reaching 3m (9.8ft) tall in the course of the summer months. It is a close relative of ginseng (Panax ginseng) and is in fact some- times used as a substitute for the latter. There are about eight herbaceous Aralia species restricted to North America and Asia. Udo is wild-foraged in Japan, Korea and China but so popular in Japan that it is now cultivated. Author Joy Larkcom stumbled on cultivated plants in a market in Tokyo in the 1990s whilst researching her book, Oriental Vegetables, describing them as 60cm (23in) long with white stalks. Behind Larkcom’s blanched udo stalks lies a very unusual production method. So-called Nanpaku-udo, or simply Tokyo-udo, is cultivated mainly under- ground beneath Western Tokyo (Tachikawa and Kokubunji City). The roots are forced during the winter months in naturally warm subterranean caverns excavated in the special Kanto loam, of volcanic origin, which can be excavated without danger of collapse. These caverns were originally used to store vegetables, but have been used for forcing udo off-season since about 1927. A pit is first dug 3-4m (9.8-13ft) deep and then several horizontal tunnels are excavated from the bottom of the pit. -
Article 1. General Provisions
Article 1. General Provisions ― 1 ― Article 1. General Provisions 1. General Principles This Food Code shall be principally interpreted and applied by general provisions, except as otherwise specified. 1) This Food Code contains the following items. (1) Standard about methods of manufacturing, processing, using, cooking, storing foods and specification about food components under the regulations of Paragraph 1 in Article 7 of Food Sanitation Act. (2) Standard about manufacturing methods of utensil, container, packaging and specification about utensil, container, packaging and their raw materials under the regulations of Paragraph 1 in Article 9 of Food Sanitation Act. (3) Labeling standard about food, food additives, utensil, container, packaging and GMO under the regulations of Paragraph 1 in Article 10 of Food Sanitation Act. 2) Weights and measures shall be applied by the metric system and are indicated in following codes. (1) Length : m, cm, mm,μ m, nm (2)Volume:L,mL,μ L (3)Weight : kg, g, mg,μ g, ng, pg (4) Area : cm 2 (5) Calorie : kcal, kj 3) Weight percentage is indicated with the symbol of %. However, material content (g) in 100 mL solution is indicated with w/v% and material content (mL) in 100 mL solution with v/v%. Weight parts per million may be indicated with the symbol of mg/kg, ppm, or mg/L. 4) Temperature indication adopts Celsius(℃ ) type. 5) Standard temperature is defined as 20℃ , and ordinary temperature as 15~25 ℃ , and room temperature as 1~3 5℃ , and slightly warm temperature as 30~40℃ . 6) Except as otherwise specified, cold water is defined as waterof15℃ orlower,hotwater aswaterof60~70 ℃ , boiling water as water of about 100℃ , and heating temperature "in/under water bath" is, except as otherwise specified, defined as about 100℃ and water bath can be replaced with steam bath of about 100℃ .