Npc1 Is Involved in Sterol Trafficking in the Filamentous Fungus Fusarium

Total Page:16

File Type:pdf, Size:1020Kb

Npc1 Is Involved in Sterol Trafficking in the Filamentous Fungus Fusarium Fungal Genetics and Biology 48 (2011) 725–730 Contents lists available at ScienceDirect Fungal Genetics and Biology journal homepage: www.elsevier.com/locate/yfgbi Npc1 is involved in sterol trafficking in the filamentous fungus Fusarium graminearum ⇑ Andrew Breakspear a, Matias Pasquali b, Karen Broz c, Yanhong Dong a, H. Corby Kistler a,c, a Department of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA b Centre de Recherche Public-Gabriel Lippmann, Département Environnement et Agro-biotechnologies – 41, rue du Brill, L-4422 Belvaux, Luxembourg c USDA ARS Cereal Disease Laboratory, 1551 Lindig Street, St. Paul, MN 55108, USA article info abstract Article history: The ortholog of the human gene NPC1 was identified in the plant pathogenic, filamentous fungus Fusar- Received 7 January 2011 ium graminearum by shared amino acid sequence, protein domain structure and cellular localization of Accepted 1 March 2011 the mature fungal protein. The Fusarium Npc1 gene shares 34% amino acid sequence identity and 51% Available online 11 March 2011 similarity to the human gene, has similar domain structure and is constitutively expressed, although up-regulated in ungerminated macroconidia and ascospores. GFP-tagged Npc1p localizes to the fungal Keywords: vacuolar membrane. Cultures derived from a Dnpc1 mutant strain contain significantly more ergosterol Niemann–Pick type C disease than cultures of the wildtype. Staining with the fluorescent, sterol binding dye filipin, shows that ergos- Ergosterol terol accumulates in vacuoles of the Dnpc1 mutant but not the wildtype strain. The Dnpc1 mutant has a Azole antifungals Fungicides temperature dependent reduction in growth and greater sensitivity to the ergosterol synthesis inhibiting fungicide tebuconazole compared with the wildtype strain or the mutant complemented with wildtype Npc1. The mutant also is significantly reduced in pathogenicity to wheat. Our results are consistent with the interpretation that Npc1p is important for normal transport of ergosterol from the vacuole and is essential for proper membrane function under particular environmental conditions. Published by Elsevier Inc. 1. Introduction translocation of cholesterol from the endosome to the endoplasmic reticulum where the sterol may be utilized as a structural compo- The process of ergosterol biosynthesis has been exploited for nent of the cellular membranes (Kwon et al., 2009). It is currently the control of fungal diseases of both plants and animals. Allyla- unclear whether cholesterol binding and translocation may be the mine and azole antifungal compounds each inhibit different enzy- primary, or merely an ancillary, function of Npc1p or the major matic steps in ergosterol biosynthesis (Ghannoum and Rice, 1999). deficiency resulting in NPC. Despite the importance of these compounds and their action for The goal of this study was to determine if a homologous process control of fungal diseases, little is known about regulation of sterol of sterol trafficking exists in filamentous fungi and to discover the homeostasis and transport within cells of filamentous fungi. role of a putative fungal NPC1 ortholog in sterol homeostasis of the In human, the gene NPC1 appears to be required for proper lipid fungus. Because of the complex domain structure and multifunc- trafficking from the lysosome (Lloyd-Evans and Platt, 2010). Muta- tional biochemical properties of human NPC1, a microbial model tions in the human NPC1 gene result in a fatal autosomal recessive for protein structure and function would be advantageous. Addi- disorder known as Niemann–Pick type C disease (Munkacsi et al., tionally, because of the importance of ergosterol biosynthesis as 2009). Niemann–Pick type C disease (NPC) is associated with accu- a target for antifungal therapy of human and plant diseases, further mulation of cholesterol and other lipids derived from low-density knowledge of ergosterol utilization and movement is warranted. lipoprotein (LDL) particles in the late endosome. The cholesterol- binding, Npc1 protein (Npc1p) is located in the endosomal membrane and current models suggest that it may result in 2. Materials and methods 2.1. Mutant generation ⇑ Corresponding author. Address: USDA ARS Cereal Disease Laboratory, 1551 Lindig Street, University of Minnesota, St. Paul, MN 55108, USA. Fax: +1 651 649 The split marker recombination procedure (Catlett et al., 2003) 5054. was used for gene replacement mutation of Npc1 (FGSG_09254.3) E-mail addresses: [email protected] (A. Breakspear), matias.pasquali@ gmail.com (M. Pasquali), [email protected] (K. Broz), [email protected] in Fusarium graminearum strain PH-1 (NRRL 31084) (Supplemental (Y. Dong), [email protected] (H. Corby Kistler). Fig. 1). Mycelium was grown 7 days in Complete Medium (CM) 1087-1845/$ - see front matter Published by Elsevier Inc. doi:10.1016/j.fgb.2011.03.001 726 A. Breakspear et al. / Fungal Genetics and Biology 48 (2011) 725–730 (Correll et al., 1987) and DNA was extracted according to a pub- (Goswami et al., 2006). For verification of NPC1 deletion and com- lished protocol (Pasquali et al., 2004). PCR was performed using plementation, 2 lg of genomic DNA was digested with BstXI and primers listed in Table S1. PCR products were purified with QIA- probed with an internal fragment of the NPC1 gene amplified with quick PCR Purification kit (Qiagen, Valencia, CA). Protoplast prepa- primers FGSG_09254_INTF and FGSG_09254_INTR. For verification ration and fungal transformation were performed as described of the hygromycin resistance (hph) gene in these strains, 1.5 lgof previously (Hou et al., 2002). Transformants were cultivated on DNA was digested with BsrGI and probed with the hph gene frag- V8 juice agar (Seong et al., 2009) with 250 lg/ml hygromycin B ment amplified from pCX62 with primers HYG/F and HYG/R. For (Calbiochem, La Jolla, CA). Single spore isolates were preliminarily confirmation of GFP tagging, 1.5 lg of genomic DNA was digested screened by PCR and two candidate mutants were retained and with BglII and probed with the eGFP gene fragment amplified from analyzed by Southern blot as described below. In addition, PCR pGFP::hph::loxP with primers GFPcodF and GFPcodR. The hph was used for verification of mutants with primers 9254-N1F and probe and internal NPC1 fragment probe were used to verify pres- 9254-N2R (Table S1), using a rapid microwave treatment of the ence of hph and NPC1, respectively. fungal samples for DNA extraction (Pasquali et al., 2010). One mu- tant was chosen for further study and designated PH-1 Dnpc1. 2.3. Pathogenicity testing To complement the Dnpc1 mutant, wildtype Npc1 was ampli- fied from strain PH-1 genomic DNA using primers FGSG_09254FP Wheat plant growth, pathogenicity tests and mycotoxin analy- and FGSG_09254RP (Table S1) that were modified with 50 phos- sis were as detailed previously (Goswami and Kistler, 2005) but phate to permit ligation into a dephosphorylated vector. The with the following modifications. Wheat plants cv. Norm were fer- resulting product was purified using a QIAquick PCR purification tilized with Nutricote 13-13-13 type 100 two weeks after planting kit (Qiagen) and pSM334 (Hou et al., 2002) was completely and with 20-20-20 fertilizer 4 weeks after planting. Inoculum was digested with EcoRV and dephosphorylated using Antarctic phos- prepared by growing cultures in 100 ml CMC for 4–5 days at 25 °C, phatase (New England BioLabs, Ipswich, MA) to prevent re-circu- 12 h fluorescent light, with shaking at 150 rpm. Conidia were col- larization. The linear vector and Npc1 fragment were then ligated lected by filtering cultures through one layer of Miracloth and cen- using T4 DNA ligase (New England BioLabs) at a 3:1 insert vector trifuging the filtrate for 10 min at 2500g. Supernatant was ratio and 1 ll of the ligation mixture was used to transform One- discarded and pelleted conidia washed twice with sterile water Shot TOP10 chemically competent cells (Invitrogen, Carlsbad, (centrifuge 10 min, 2500g). The concentration of conidia was ad- CA). Ten colonies were picked and subject to plasmid purification justed to 106 conidia per ml water. To aid in adhesion to the wheat using the QIAprep spin miniprep kit (Qiagen). Restriction digests spikelet, Triton X-100 was added to a final concentration of 0.1% (v/ confirmed the presence of the insert in all ten colonies, and one, v). Awns were removed from the central spikelet of wheat heads at designated pNPC1COMP was chosen to transform the Dnpc1 mu- anthesis, and the central spikelet inoculated with 104 conidia using tant. Protoplasting and transformation was carried out as previ- a micropipette. Inoculated plants were then placed in a dew cham- ously described (Hou et al., 2002) and yielded two transformants ber for 24 h. The door to the chamber was then opened for a half that were cultivated on V8 juice agar supplemented with 250 lg/ hour, closed and dew applied for another 24 h. Inoculated plants ml geneticin. One transformant was selected for further study were then transferred to a growth chamber (18 °C, 16 h day, and designated PH-1 Dnpc1::Npc1. 16 °C night measured at head height) for 14 days. For each strain, To generate Npc1p tagged with green fluorescent protein (GFP), ten wheat heads were inoculated per replication. Each strain had a fusion PCR protocol was used (Yang et al., 2004). Primers GFPF four replicates for a total of 40 heads per strain. Head blight symp- and GFPR (Table S1) were used to amplify a 2.4 kb region of toms were rated 14 days post inoculation (dpi) by counting the pGFP::hph::loxP (GenBank accession: FJ457011) (Honda and number of symptomatic spikelets per inoculated head (Proctor et Selker, 2009) containing the GFP and hygromycin resistance genes al., 1995). A total of 10 spikelets were evaluated per head, four (Supplemental Fig. 2). A 1 kb region of Npc1 immediately upstream spikelets below the inoculated central spikelet, the inoculated of the predicted stop codon was amplified with primers 09254LF1F spikelet, and five spikelets above.
Recommended publications
  • Genotyping Approach for Potential Common Source of Enterocytozoon
    SYNOPSIS Genotyping Approach for Potential Common Source of Enterocytozoon bieneusi Infection in Hematology Unit Guillaume Desoubeaux, Céline Nourrisson, Maxime Moniot, Marie-Alix De Kyvon, Virginie Bonnin, Marjan Ertault De La Bretonniére, Virginie Morange, Éric Bailly, Adrien Lemaignen, Florent Morio, Philippe Poirier Microsporidiosis is a fungal infection that generally causes wide range of host species (1,4). At least 16 microsporidian digestive disorders, especially in immunocompromised species have been described in humans, but Enterocytozoon hosts. Over a 4-day period in January 2018, 3 patients with bieneusi is the most common (5). However, little is known hematologic malignancies who were admitted to the hema- about the actual epidemiology of E. bieneusi microsporidi- tology unit of a hospital in France received diagnoses of En- osis, and there is a need for a better understanding of its terocytozoon bieneusi microsporidiosis. This unusually high pathophysiology and parasitic cycle (3,5). Unfortunately, incidence was investigated by sequence analysis at the in- ternal transcribed spacer rDNA locus and then by 3 micro- epidemiologic studies are complicated because E. bieneusi satellites and 1 minisatellite for multilocus genotyping. The infection has a low incidence rate worldwide (6), and its 3 isolates had many sequence similarities and belonged to microbiological diagnosis is difficult and likely often over- a new genotype closely related to genotype C. In addition, looked (7). In addition, the species is not easy to cultivate multilocus genotyping showed high genetic distances with in vitro in routine practice. Investigations can be carried out all the other strains collected from epidemiologically unre- directly only from infected biologic samples, which usually lated persons; none of these strains belonged to the new use DNA from fecal specimens (1,3,7).
    [Show full text]
  • Alternatives in Molecular Diagnostics of Encephalitozoon and Enterocytozoon Infections
    Journal of Fungi Review Alternatives in Molecular Diagnostics of Encephalitozoon and Enterocytozoon Infections Alexandra Valenˇcáková * and Monika Suˇcik Department of Biology and Genetics, University of Veterinary Medicine and Pharmacy, Komenského 73, 04181 Košice, Slovakia; [email protected] * Correspondence: [email protected] Received: 15 June 2020; Accepted: 20 July 2020; Published: 22 July 2020 Abstract: Microsporidia are obligate intracellular pathogens that are currently considered to be most directly aligned with fungi. These fungal-related microbes cause infections in every major group of animals, both vertebrate and invertebrate, and more recently, because of AIDS, they have been identified as significant opportunistic parasites in man. The Microsporidia are ubiquitous parasites in the animal kingdom but, until recently, they have maintained relative anonymity because of the specialized nature of pathology researchers. Diagnosis of microsporidia infection from stool examination is possible and has replaced biopsy as the initial diagnostic procedure in many laboratories. These staining techniques can be difficult, however, due to the small size of the spores. The specific identification of microsporidian species has classically depended on ultrastructural examination. With the cloning of the rRNA genes from the human pathogenic microsporidia it has been possible to apply polymerase chain reaction (PCR) techniques for the diagnosis of microsporidial infection at the species and genotype level. The absence of genetic techniques for manipulating microsporidia and their complicated diagnosis hampered research. This study should provide basic insights into the development of diagnostics and the pitfalls of molecular identification of these ubiquitous intracellular pathogens that can be integrated into studies aimed at treating or controlling microsporidiosis. Keywords: Encephalitozoon spp.; Enterocytozoonbieneusi; diagnosis; molecular diagnosis; primers 1.
    [Show full text]
  • Supplemental Figure 2.Pdf
    Supplemental Figure 2. Published genomes used in this study Genome code proteome_file Genus species Acain1_GeneCatalog_proteins_20150 Acain1 309.aa.fasta Acaromyces ingoldii MCA 4198 Aciri1_iso_GeneCatalog_proteins_20 Aciri1iso 111207.aa.fasta Acidomyces richmondensis Agabivarbi Abisporus_varbisporusH97.v2.Filtere Agaricus bisporus var bisporus sH972 dModels3.proteins.fasta H97 Agabivarb Abisporus_varburnettii.v2.FilteredMo Agaricus bisporus var. burnettii ur1 dels1.proteins.fasta JB137-S8 Altal1_GeneCatalog_proteins_201410 Altal1 10.aa.fasta Alternaria alternata SRC1lrK2f Amamu1_GeneCatalog_proteins_201 Amamu1 20806.aa.fasta Amanita muscaria Koide Amath1_GeneCatalog_proteins_2012 Amath1 0702.aa.fasta Amanita thiersii Skay4041 Amore1_GeneCatalog_proteins_2011 Amore1 0719.aa.fasta Amorphotheca resinae Antav1_GeneCatalog_proteins_20130 Anthostoma_avocetta_NRRL_31 Antav1 828.aa.fasta 90 Armme1_1_GeneCatalog_proteins_20 Armme11 140802.aa.fasta Armillaria mellea Armos1 Armos1.aa.fasta Armillaria ostoye Artol1_GeneCatalog_proteins_201312 Arthrobotrys oligospora ATCC Artol1 09.aa.fasta 24927 Artbe1_GeneCatalog_proteins_20131 Arthroderma benhamiae CBS Artbe1 209.aa.fasta 112371 Artel1_GeneCatalog_proteins_201406 Artel1 30.aa.fasta Artolenzites elegans CIRM1663 Ascim1_GeneCatalog_proteins_20121 Ascim1 221.aa.fasta Ascobolus immersus RN42 Ascsa1_GeneCatalog_proteins_20140 Ascocoryne_sarcoides_NRRL500 Ascsa1 116.aa.fasta 72 Ascru1_GeneCatalog_proteins_20111 Ascoidea rubescens NRRL Ascru1 107.aa.fasta Y17699 Ashgo1_GeneCatalog_proteins_20130 Ashgo1
    [Show full text]
  • Enterocytozoon Bieneusi and Encephalitozoon Spp
    Deng et al. BMC Veterinary Research (2020) 16:212 https://doi.org/10.1186/s12917-020-02434-z RESEARCH ARTICLE Open Access First identification and genotyping of Enterocytozoon bieneusi and Encephalitozoon spp. in pet rabbits in China Lei Deng†, Yijun Chai†, Leiqiong Xiang†, Wuyou Wang†, Ziyao Zhou, Haifeng Liu, Zhijun Zhong, Hualin Fu and Guangneng Peng* Abstract Background: Microsporidia are common opportunistic parasites in humans and animals, including rabbits. However, only limited epidemiology data concern about the prevalence and molecular characterization of Enterocytozoon bieneusi and Encephalitozoon spp. in rabbits. This study is the first detection and genotyping of Microsporidia in pet rabbits in China. Results: A total of 584 faecal specimens were collected from rabbits in pet shops from four cities in Sichuan province, China. The overall prevalence of microsporidia infection was 24.8% by nested PCR targeting the internal transcribed spacer (ITS) region of E. bieneusi and Encephalitozoon spp. respectively. E. bieneusi was the most common species (n = 90, 15.4%), followed by Encephalitozoon cuniculi (n = 34, 5.8%) and Encephalitozoon intestinalis (n = 16, 2.7%). Mixed infections (E. bieneusi and E. cuniculi) were detected in five another rabbits (0.9%). Statistically significant differences in the prevalence of microsporidia were observed among different cities (χ2 = 38.376, df = 3, P < 0.01) and the rabbits older than 1 year were more likely to harbour microsporidia infections (χ2 =9.018,df=2,P <0.05).Elevendistinct genotypes of E. bieneusi were obtained, including five known (SC02, I, N, J, CHY1) and six novel genotypes (SCR01, SCR02, SCR04 to SCR07). SC02 was the most prevalent genotype in all tested cities (43.3%, 39/90).
    [Show full text]
  • Species-Specific Identification of Microsporidia in Stool and Intestinal Biopsy Specimens by the Polymerase Chain Reaction
    Article Vol. 16, No. 5 369 Eur. J. Clin. Microbiol. Infect. Dis., 1997, 16:369-376 Species-Specific Identification of Microsporidia in Stool and Intestinal Biopsy Specimens by the Polymerase Chain Reaction N.R Kock 1., H. Petersen 2, T. Fenner 2, I. Sobottka 3, C. Schmetz 4, R Deplazes 5, N.J. Pieniazek 6, H. Albrecht 7, J. Schottelius I In view of the increasing number of cases of human microsporidiosis, simple and rapid methods for clear identification of microsporidian parasites to the species level are re- quired. In the present study, the polymerase chain reaction (PCR) was used for species- specific detection of Encephalitozoon cunicufi, Encephalitozoon hellem, Encephafitozoon (Septata) intestinalis, and Enterocytozoon bieneusi in both tissue and stool. Using stool specimens and intestinal biopsies of patients infected with Enterocytozoon bieneusi (n = 9), Encephalitozoon spp. (n = 2), and Encephafitozoon intestinalis (n = 1) as well as stool spiked with spores of Encephafitozoon cunicufi and Encephalitozoon hellem and tissue cultures of Encephalitozoon cuniculi and Encephalitozoon hellem, three proce- dures were developed to produce PCR-ready DNA directly from the samples. Specific detection of microsporidian pathogens was achieved in the first PCR. The subsequent nested PCR permitted species determination and verified the first PCR products. With- out exception, the PCR assay confirmed electron microscopic detection of Enterocyto- zoon bieneusi and Encephalitozoon intestinalis in stool specimens and their correspond- ing biopsies and in spiked stool samples and tissue cultures infected with Encephalito- zoon cuniculi and Encephafitozoon hellem. Moreover, identification of Encephafito- zoon spp. could be specified as Encephalitozoon intestinalis. Whereas standard meth- ods such as light and transmission electron microscopy may lack sensitivity or require more time and special equipment, the PCR procedure described facilitates species- specific identification of microsporidian parasites in stool, biopsies, and, probably, other samples in about five hours.
    [Show full text]
  • Microsporidia: a Journey Through Radical Taxonomical Revisions
    fungal biology reviews 23 (2009) 1–8 journal homepage: www.elsevier.com/locate/fbr Review Microsporidia: a journey through radical taxonomical revisions Nicolas CORRADI, Patrick J. KEELING* Canadian Institute for Advanced Research, Department of Botany, University of British Columbia, 3529-6270 University Boulevard, Vancouver, BC V6T 1Z4, Canada article info abstract Article history: Microsporidia are obligate intracellular parasites of medical and commercial importance, Received 3 March 2009 characterized by a severe reduction, or even absence, of cellular components typical of Received in revised form eukaryotes such as mitochondria, Golgi apparatus and flagella. This simplistic cellular 23 May 2009 organization has made it difficult to infer the evolutionary relationship of Microsporidia Accepted 28 May 2009 to other eukaryotes, because they lack many characters historically used to make such comparisons. Eventually, it was suggested that this simplicity might be due to Microspor- Keywords: idia representing a very early eukaryotic lineage that evolved prior to the origin of many Complexity typically eukaryotic features, in particular the mitochondrion. This hypothesis was sup- Genome reduction ported by the first biochemical and molecular studies of the group. In the last decade, Microsporidia however, contrasting evidence has emerged, mostly from molecular sequences, that Phylogeny show Microsporidia are related to fungi, and it is now widely acknowledged that features Simplicity previously recognized as primitive are instead highly derived adaptations to their obligate Taxonomy parasitic lifestyle. The various sharply differing views on microsporidian evolution resulted in several radical reappraisals of their taxonomy. Here we will chronologically review the causes and consequences for these taxonomic revisions, with a special emphasis on why the unique cellular and genomic features of Microsporidia lured scientists towards the wrong direction for so long.
    [Show full text]
  • Evolution and Functional Insights of Different Ancestral Orthologous Clades of Chitin Synthase Genes in the Fungal Tree of Life
    ORIGINAL RESEARCH published: 01 February 2016 doi: 10.3389/fpls.2016.00037 Evolution and Functional Insights of Different Ancestral Orthologous Clades of Chitin Synthase Genes in the Fungal Tree of Life Mu Li 1 †, Cong Jiang 1 †, Qinhu Wang 1, Zhongtao Zhao 2, Qiaojun Jin 1, Jin-Rong Xu 1, 3 and Huiquan Liu 1* Edited by: Thiago Motta Venancio, 1 State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling, Universidade Estadual do Norte China, 2 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China, 3 Department of Botany and Fluminense, Brazil Plant Pathology, Purdue University, West Lafayette, IN, USA Reviewed by: Lakshminarayan M. Iyer, Chitin synthases (CHSs) are key enzymes in the biosynthesis of chitin, an important National Center for Biotechnology Information, National Library of structural component of fungal cell walls that can trigger innate immune responses in Medicine, National Institutes of Health, host plants and animals. Members of CHS gene family perform various functions in fungal USA Robson Francisco De Souza, cellular processes. Previous studies focused primarily on classifying diverse CHSs into Universidade de São Paulo, Brazil different classes, regardless of their functional diversification, or on characterizing their A. Maxwell Burroughs, functions in individual fungal species. A complete and systematic comparative analysis National Center for Biotechnology Information, National Library of of CHS genes based on their orthologous relationships will be valuable for elucidating Medicine, National Institutes of Health, the evolution and functions of different CHS genes in fungi. Here, we identified and USA compared members of the CHS gene family across the fungal tree of life, including *Correspondence: Huiquan Liu 18 divergent fungal lineages.
    [Show full text]
  • Appendix a Bacteria
    Appendix A Complete list of 594 pathogens identified in canines categorized by the following taxonomical groups: bacteria, ectoparasites, fungi, helminths, protozoa, rickettsia and viruses. Pathogens categorized as zoonotic/sapronotic/anthroponotic have been bolded; sapronoses are specifically denoted by a ❖. If the dog is involved in transmission, maintenance or detection of the pathogen it has been further underlined. Of these, if the pathogen is reported in dogs in Canada (Tier 1) it has been denoted by an *. If the pathogen is reported in Canada but canine-specific reports are lacking (Tier 2) it is marked with a C (see also Appendix C). Finally, if the pathogen has the potential to occur in Canada (Tier 3) it is marked by a D (see also Appendix D). Bacteria Brachyspira canis Enterococcus casseliflavus Acholeplasma laidlawii Brachyspira intermedia Enterococcus faecalis C Acinetobacter baumannii Brachyspira pilosicoli C Enterococcus faecium* Actinobacillus Brachyspira pulli Enterococcus gallinarum C C Brevibacterium spp. Enterococcus hirae actinomycetemcomitans D Actinobacillus lignieresii Brucella abortus Enterococcus malodoratus Actinomyces bovis Brucella canis* Enterococcus spp.* Actinomyces bowdenii Brucella suis Erysipelothrix rhusiopathiae C Actinomyces canis Burkholderia mallei Erysipelothrix tonsillarum Actinomyces catuli Burkholderia pseudomallei❖ serovar 7 Actinomyces coleocanis Campylobacter coli* Escherichia coli (EHEC, EPEC, Actinomyces hordeovulneris Campylobacter gracilis AIEC, UPEC, NTEC, Actinomyces hyovaginalis Campylobacter
    [Show full text]
  • Phylogenomic Evolutionary Surveys of Subtilase Superfamily Genes in Fungi
    www.nature.com/scientificreports OPEN Phylogenomic evolutionary surveys of subtilase superfamily genes in fungi Received: 22 September 2016 Juan Li, Fei Gu, Runian Wu, JinKui Yang & Ke-Qin Zhang Accepted: 28 February 2017 Subtilases belong to a superfamily of serine proteases which are ubiquitous in fungi and are suspected Published: 30 March 2017 to have developed distinct functional properties to help fungi adapt to different ecological niches. In this study, we conducted a large-scale phylogenomic survey of subtilase protease genes in 83 whole genome sequenced fungal species in order to identify the evolutionary patterns and subsequent functional divergences of different subtilase families among the main lineages of the fungal kingdom. Our comparative genomic analyses of the subtilase superfamily indicated that extensive gene duplications, losses and functional diversifications have occurred in fungi, and that the four families of subtilase enzymes in fungi, including proteinase K-like, Pyrolisin, kexin and S53, have distinct evolutionary histories which may have facilitated the adaptation of fungi to a broad array of life strategies. Our study provides new insights into the evolution of the subtilase superfamily in fungi and expands our understanding of the evolution of fungi with different lifestyles. To survive, fungi depend on their ability to harvest nutrients from living or dead organic materials. The eco- logical diversification of fungi is profoundly affected by the array of enzymes they secrete to help them obtain such nutrients. Thus, the differences in their secreted enzymes can have a significant impact on their abilities to colonize plants and animals1. Among these enzymes, a superfamily of serine proteases named subtilases, ubiq- uitous in fungi, is suspected of having distinct functional properties which allowed fungi adapt to different eco- logical niches.
    [Show full text]
  • Host Specificity of Enterocytozoon Bieneusi Genotypes in Bactrian
    Qi et al. Parasites & Vectors (2018) 11:219 https://doi.org/10.1186/s13071-018-2793-9 RESEARCH Open Access Host specificity of Enterocytozoon bieneusi genotypes in Bactrian camels (Camelus bactrianus)inChina Meng Qi1,2†, Junqiang Li2†, Aiyun Zhao1, Zhaohui Cui2, Zilin Wei1, Bo Jing1* and Longxian Zhang2* Abstract Background: Enterocytozoon bieneusi is an obligate, intracellular fungus and is commonly reported in humans and animals. To date, there have been no reports of E. bieneusi infections in Bactrian camels (Camelus bactrianus). The present study was conducted to understand the occurrence and molecular characteristics of E. bieneusi in Bactrian camels in China. Results: Of 407 individual Bactrian camel fecal specimens, 30.0% (122) were E. bieneusi-positive by nested polymerase chain reaction (PCR) based on internal transcriber spacer (ITS) sequence analysis. A total of 14 distinct E. bieneusi ITS genotypes were obtained: eight known genotypes (genotype EbpC, EbpA, Henan-IV, BEB6, CM8, CHG16, O and WL17), and six novel genotypes (named CAM1 to CAM6). Genotype CAM1 (59.0%, 72/122) was the most predominant genotype in Bactrian camels in Xinjiang, and genotype EbpC (18.9%, 23/122) was the second-most predominant genotype. Phylogenetic analysis revealed that six known genotypes (EbpC, EbpA, WL17, Henan-IV, CM8 and O) and three novel genotypes (CAM3, CAM5 and CAM6) fell into the human-pathogenic group 1. Two known genotypes (CHG16 and BEB6) fell into the cattle host-specific group 2. The novel genotypes CAM1, CAM 2 and CAM4 cluster into group 8. Conclusions: To our knowledge, this is the first report of E. bieneusi in Bactrian camels.
    [Show full text]
  • Enterocytozoon Bieneusi Infection
    Microsporidiosis: Enterocytozoon bieneusi infection Dr. Ujjala Ghoshal Professor & Incharge Parasitology Department of Microbiology Sanjay Gandhi Postgraduate Institute of Medical ESCMIDSciences, Lucknow,eLibrary India E mail: [email protected] © by author Microsporidiosis Microsporidiosis is an opportunistic infection caused by a group of obligate intracellular eukaryotic pathogens, which is phylogenetically related to Fungi It is increasingly common pathology in humans due to growing number of persons with immunodepressive states About 1300 species of 150 genera known to infect vertebrates as well as invertebrates Fourteen species are implicated in human pathology, including Enterocytozoon bieneusi and Encephalitozoon intestinalis ESCMID eLibrary E. bieneusi known ©to cause by90 %authorof human infections Enterocytozoon bieneusi In 1985, E. bieneusi was first recognized as opportunistic pathogen in AIDS patient E. bieneusi has been increasingly reported in treatment induced immunosuppression Renal transplant (common) Bone marrow transplant Stem cell transplant and, Liver transplant recipients Cancer patients Patient with Inflammatory bowel disease (IBD) EESCMID. bieneusi has been reported eLibraryamong traveler's, children and elderly as well Lopez-Velez R et al. 1999 © by author Enterocytozoon bieneusi contd.. E. bieneusi has been identified in Pets and farm animals (dog, cat, pig, goat, donkey, cattle, rabbit) Wild animals (fox, otter, raccoon, nutria) Birds (industrial poultry, urban pigeons) Desportes livage I et al. 2005; Anane S et al. 2010 Spores of E. bieneusi have been detected in surface water and also certain fruits, vegetables and milk ESCMID eLibrary © by author E. bieneusi in HIV-infected patients Country Patients with No. of Prevalence diarrhea patients Weber et al. 1992 USA Mixed 134 4.5% Kotler et al.
    [Show full text]
  • The First United Workshop on Microsporidia from Invertebrate and Vertebrate Hosts
    FOLIA PARASITOLOGICA 52: 1–7, 2005 EDITORIAL INTRODUCTION The First United Workshop on Microsporidia from Invertebrate and Vertebrate Hosts Louis M. Weiss Departments of Pathology, and Medicine, Albert Einstein College of Medicine, Bronx, New York 10461, USA Key words: Microsporidia, taxonomy, phylogeny, meetings, differentiation, genome, insect pathogens, fish pathogens, microsporidiosis Abstract. The phylum Microsporidia is a large group of parasitic unicellular eukaryotes that infect a wide range of invertebrate and vertebrate taxa. These organisms are significant human and veterinary pathogens with impacts on medicine, agriculture and aquaculture. Scientists working on these pathogens represent diverse disciplines that have had limited opportunities for detailed interactions. A NATO Advanced Research Workshop ‘Emergent Pathogens in the 21st Century: First United Workshop on Mi- crosporidia from Invertebrate and Vertebrate Hosts’ was held July 12–15, 2004 at the Institute of Parasitology of the Academy of Sciences of the Czech Republic to bring together experts in insect, fish, veterinary and human microsporidiosis for the exchange of information on these pathogens. At this meeting, discussions were held on issues related to taxonomy and phylogeny. It was recognized that microsporidia are related to fungi, but the strong opinion of the participants was that the International Code of Zoological Nomenclature should continue to be applied for taxonomic descriptions of the Microsporidia and that they be treated as an independent group emerging from a paraphyletic fungi. There continues to be exponential growth in the pace and volume of research on these ubiquitous intracellular protists. The small genomes of these organisms and the reduction in the size of many of their genes are of interest to many disciplines.
    [Show full text]