Microsporidian Infections of Amphipods with Special Reference
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On the Current State of Taxonomy of the Baikal Lake Amphipods (Crustacea: Amphipoda) and the Typological Ways of Constructing Their System
Arthropoda Selecta 28(3): 374–402 © ARTHROPODA SELECTA, 2019 On the current state of taxonomy of the Baikal Lake amphipods (Crustacea: Amphipoda) and the typological ways of constructing their system Î ñîâðåìåííîì ñîñòîÿíèè òàêñîíîìèè áàéêàëüñêèõ àìôèïîä (Crustacea: Amphipoda) è òèïîëîãè÷åñêîì ñïîñîáå ïîñòðîåíèÿ èõ ñèñòåìû V.V. Takhteev1, 2 Â.Â. Òàõòååâ1, 2 1 Department of Biological and Soil Science at Irkutsk State University, Karl Marx St. 1, Irkutsk 664003, Russia. E-mail: [email protected] 1 Иркутский государственный университет, биолого-почвенный факультет, ул. К. Маркса, 1, Иркутск 664003, Россия. E-mail: [email protected] 2 Baikal Museum of Irkutsk Scientific Center SB RAS, Akademicheskaya St. 1, Listvyanka Settl., Irkutsk Region 664520, Russia. 2 Байкальский Музей Иркутского научного центра Сибирского отделения Российской академии наук, ул. Академическая, 1, пос. Листвянка Иркутской обл. 664520, Россия. KEY WORDS: amphipods, Lake Baikal, taxonomy, taxonomic inflation, archetype, core, deviations, estab- lishment of families. КЛЮЧЕВЫЕ СЛОВА: амфиподы, озеро Байкал, таксономия, таксономическая инфляция, архетип, ядро, отклонения, установление семейств. Editorial note On the publication “On the current state of taxonomy of the Baikal Lake amphipods (Crustacea, Amphipoda) and the typological ways of constructing their system” by V.V. Takhteev In this issue we present an extensive article prepared by Prof. Vadim V. Takhteev, which is based on his long time effort in the study of diversity of amphipods in Lake Baikal and its watershed. This paper is highly polemical and may even seem either archaic or heretical in the time of domination of the phylogenetic paradigms in systematics. The author advocates classical morphological taxonomy, which own tradition, methods (disregarding whether we call it typology or not) and the language are significantly older than the modern phylogenetic approach. -
Based Phylogeny of Endemic Lake Baikal Amphipod Species Flock
Molecular Ecology (2017) 26, 536–553 doi: 10.1111/mec.13927 Transcriptome-based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection SERGEY A. NAUMENKO,*†‡ MARIA D. LOGACHEVA,*† § NINA V. POPOVA,* ANNA V. KLEPIKOVA,*† ALEKSEY A. PENIN,*† GEORGII A. BAZYKIN,*†§¶ ANNA E. ETINGOVA,** NIKOLAI S. MUGUE,††‡‡ ALEXEY S. KONDRASHOV*§§ and LEV Y. YAMPOLSKY¶¶ *Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia, †Institute for Information Transmission Problems (Kharkevich Institute) of the Russian Academy of Sciences, Moscow, Russia, ‡Genetics and Genome Biology Program, The Hospital For Sick Children, Toronto, ON, Canada, §Pirogov Russian National Research Medical University, Moscow, Russia, ¶Skolkovo Institute of Science and Technology, Skolkovo, Russia, **Baikal Museum, Irkutsk Research Center, Russian Academy of Sciences, Listvyanka, Irkutsk region, Russia, ††Laboratory of Molecular Genetics, Russian Institute for Fisheries and Oceanography (VNIRO), Moscow, Russia, ‡‡Laboratory of Experimental Embryology, Koltsov Institute of Developmental Biology, Moscow, Russia, §§Department of Ecology and Evolution, University of Michigan, Ann Arbor, MI, USA, ¶¶Department of Biological Sciences, East Tennessee State University, Johnson City, TN, USA Abstract Endemic species flocks inhabiting ancient lakes, oceanic islands and other long-lived isolated habitats are often interpreted as adaptive radiations. Yet molecular evidence for directional -
Lake Baikal Bibliography, 1989- 1999
UC San Diego Bibliography Title Lake Baikal Bibliography, 1989- 1999 Permalink https://escholarship.org/uc/item/7dc9945d Author Limnological Institute of RAS SB Publication Date 1999-12-31 eScholarship.org Powered by the California Digital Library University of California Lake Baikal Bibliography, 1989- 1999 This is a bibliography of 839 papers published in English in 1989- 1999 by members of Limnological Institute of RAS SB and by their partners within the framework of the Baikal International Center for Ecological Research. Some of the titles are accompanied by abstracts. Coverage is on different aspects of Lake Baikal. Adov F., Takhteev V., Ropstorf P. Mollusks of Baikal-Lena nature reserve (northern Baikal). // World Congress of Malacology: Abstracts; Washington, D.C.: Unitas Malacologica; 1998: 6. Afanasyeva E.L. Life cycle of Epischura baicalensis Sars (Copepoda, Calanoida) in Lake Baikal. // VI International Conference on Copepoda: Abstracts; July 29-August 3, 1996; Oldenburg/Bremerhaven, Germany. Konstanz; 1996: 33. Afanasyeva E.L. Life cycle of Epischura baicalensis Sars (Copepoda, Calanoida) in Lake Baikal. // J. Mar. Syst.; 1998; 15: 351-357. Epischura baicalensis Sars is a dominant pelagic species of Lake Baikal zooplankton. This is endemic to Lake Baikal and inhabits the entire water column. It produces two generations per year: the winter - spring and the summer. These copepods develop under different ecological conditions and vary in the duration of life stages, reproduction time, maturation of sex products and adult males and females lifespan. The total life period of the animals from each generation is one year. One female can produce 10 egg sacks every 10 - 20 days during its life time. -
| a Modern Classification of Lake Baikal Amphipods
1 | A MODERN CLASSIFICATION OF LAKE BAIKAL AMPHIPODS Professor Ravil Kamaltynov of Irkutsk has recently published a catalogue of the very rich fauna of Lake Baikal Amphipoda in the new series “Index of Animal species inhabiting Lake Baikal and its catchment area”. The Amphipoda are on pp 572-831 of Vol I Book 1 of this series, published by the science editors Nauka in Novosibirsk in 2001. As this book is not all that easy to obtain in the west, prof. Kamaltynov has kindly allowed me to copy his classification of the Baikal amphipods on the amphipod website, thereby making it available and ‘downloadable’ for all colleagues. It should be noted, that Dr V.V.Tachteew, who also recently has published an important monograph on Lake Baikal amphipods :“Essays on the amphipods of Lake Baikal (systematics, comparative ecology, evolution)”( Irkutsk State University Press, Irkutsk, 2000, 356 pp) employs a somewhat different classification, with fewer families (cf pp 325-335 in his book); NB All taxa from this book are cited by Kamaltynov as published in 2001.. Both works are in Russian, but Kamaltynov gives English diagnoses of the new taxa described in his catalogue on pp 763-818. Here follows Kamaltynov’s classification: NB. The type species are denoted by an asterisk ACANTHOGAMMARIDAE Garjajeff, 1901 ACANTHOGAMMARINAE Garjajeff, 1901 Acanthogammarus Stebbing, 1899 Acanthogammarus Stebbing, 1899 A. (A.) albus (Garjajeff, 1901) *A. (A.) godlewskii (Dybowsky, 1874) A.(A.) gracilispinus Tachteew, 2001 Ancryracanthus Kamaltynov, 2001 A. (An.) lappaceus Tachteew, 2001 A. (An.) longispinus Tachteew, 2001 A. (An.) maculosus Dorogostaisky, 1930 *A. (An.) victorii (Dybowsky, 1874) Diplacanthus Kamaltynov, 2001 *D. -
V.V. Takhteev. Trends in the Evolution of Baikal Amphipods And
Trends in the Evolution of Baikal Amphipods and Evolutionary Parallels with some Marine Malacostracan Faunas V.V. TAKHTEEV I. Summary 197 II. Introduction.......... 198 III. Basic Tendencies in the Evolution of Baikalian Amphipods 199 A. Bathymetric Segregation.......... 199 B. Differentiation by Season of Reproduction 201 C. Segregation in Terms of Substrate Layer........................................... 203 D. Differentiation by Substrate 204 E. Trophic Differentiation 205 F. Transition to Marsupial Parasitism.................................................... 205 G. Appearance of Giant Forms 206 H. Appearance of Dwarf Forms (Hypomorphosis) 207 I. Occupation of the Shallow Gulf Habitats of the Lake...................... 207 J. Geographical Differentiation.............................................................. 209 IV. Parallel (Nomogenetic) Development of the Baikalian and Marine Malocostracan Faunas............................................................................... 211 Acknowledgements..................................................................................... 215 References................................................................................................ .. 215 I. SUMMARY The taxonomically rich amphipod fauna of Lake Baikal (at present 257 described species and 74 subspecies) shows great ecological diversity and a variety of evolutionary directions. The main trends in the intralacustrine evolution of this group are: habitat partitioning by depth, substrate type or layer; trophic differentiation; -
Evolutionary Histories of Symbioses Between Microsporidia and Their Amphipod Hosts : Contribution of Studying Two Hosts Over Their Geographic Ranges
Evolutionary histories of symbioses between microsporidia and their amphipod hosts : contribution of studying two hosts over their geographic ranges. Adrien Quiles To cite this version: Adrien Quiles. Evolutionary histories of symbioses between microsporidia and their amphipod hosts : contribution of studying two hosts over their geographic ranges.. Biodiversity and Ecology. Univer- sité Bourgogne Franche-Comté; Uniwersytet lódzki, 2019. English. NNT : 2019UBFCK094. tel- 02878707 HAL Id: tel-02878707 https://tel.archives-ouvertes.fr/tel-02878707 Submitted on 23 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. UNIVERSITÉ DE BOURGOGNE FRANCHE-COMTÉ, France - UMR CNRS 6282 Biogéosciences, Equipe Ecologie Evolutive. UNIVERSITY OF LODZ, Poland - Department of Invertebrate Zoology and Hydrobiology. Philosophiæ doctor in Life Sciences, Ecology and Evolution Adrien QUILES Evolutionary histories of symbioses between microsporidia and their amphipod hosts : contribution of studying two hosts over their geographic ranges. Ph.D defense will be held the -
A Review of Gammaridae (Crustacea: Amphipoda): the Family Extent, Its Evolutionary History, and Taxonomic Redefinition of Genera
Zoological Journal of the Linnean Society, 2016, 176, 323–348. A review of Gammaridae (Crustacea: Amphipoda): the family extent, its evolutionary history, and taxonomic redefinition of genera ZHONGE HOU1 and BORIS SKET2* 1Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China 2Department of Biology, Biotechnical Faculty, University of Ljubljana, PO Box 2995, Ljubljana SI-1001, Slovenia Received 30 March 2015; revised 22 June 2015; accepted for publication 24 June 2015 By molecular analysis of a high number of gammarids, including 29 out-group genera, we could assure the monophyly of Gammaridae. To avoid the paraphyly of the family, we propose the omission of Pontogammaridae, Typhlogammaridae, and all Baikalian families. Similarly, the genera Fontogammarus, Sinogammarus, Lagunogammarus, Pephredo, Neogammarus, and Laurogammarus may be cancelled. But, tens of Baikal genera, nested within Gammarus, are so diverse that they must be retained, although rendering Gammarus paraphyletic. Besides we propose the polyphyletic Echinogammarus–Chaetogammarus group to be divided into monophyletic genera Echinogammarus s. str., Homoeogammarus, Parhomoeogammarus, Marinogammarus, Relictogammarus gen. nov., Chaetogammarus, and Trichogammarus gen. nov. These solutions made it possible to complete the first analysis of the family evolu- tion in light of its phylogeny. Perimarine clades are mainly basally split clades, whereas in some ancient lakes extremely rich endemic faunas had developed polyphyletically. The troglobiotic Typhlogammarus group from Dinarides and Caucasus formed a monophylum, whereas the troglobiotic assemblage of Gammarus species is highly polyphyletic. Reduction of the uropod III endopodite, which classically distinguishes between the genera Gammarus and Echinogammarus, appeared to be highly polyphyletic. Protective dorsal pleonal projections occur scattered across the family and beyond, whereas lateral projections were limited to species of ancient lakes, so both structures were polyphyletic. -
Amphipod Newsletter 43 (2019)
AMPHIPOD NEWSLETTER 43 2019 Interview BIBLIOGRAPHY SWISS AMPHIPODA PAGE 4 PAGE 64 THIS NEWSLETTER FEATURES AN TAXON LIST INTERVIEW WITH PAGE 54 CHARLES GRIFFITHS PATAGONIAN LETTER FROM PAGE 2 AMPHIPODA SIDOROV PAGE 66 PAGE 63 AMPHIPOD NEWSLETTER 43 Dear Amphipodologists, AN 43 arrives only just after the 18th ICA in Dijon, where we again met many old friends and made many new ones. Sadly we have also in 2019 lost two dear colleagues. John Holsinger and Augusto Vigna Statistics from Taglianti. An extensive in memoriam for John Holsinger has been this Newsletter written by David Culver (see bibliography), while we hope to be able to include an in memoriam for Augusto Vigna Taglianti (Roma) in AN 53 new genera 44. We have an interview with Charles Griffiths in Cape Town, the foremost author on S. African amphipods, but someone who never 72 new species has made it to our conferences. There are also shorter contributions by Roman Alther and Dmitry Sidorov as well as a report from a workshop on Patagonian amphipoda. We are very happy to hear from you - and we are pleased to present both small and large reports from your work, worskhops and gatherings! Information about getting in contact with the newsletter is at page 63. The bibliography this time contains 392 papers. The number of new species contained in it is with 72 maybe a bit less than in the earlier newsletters, but 53 new genera in one Newsletter is probably a record, due mainly to Jim Lowry & Alan Myers revisionary work on the Talitroidea. The higher classification of our beloved amphipods is clearly still in a state of flux. -
Molecular and Morphological Evolution of the Amphipod Radiation of Lake Baikal
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2002 Molecular and morphological evolution of the amphipod radiation of Lake Baikal Kenneth S. Macdonald III College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Ecology and Evolutionary Biology Commons, Genetics Commons, Molecular Biology Commons, and the Zoology Commons Recommended Citation Macdonald, Kenneth S. III, "Molecular and morphological evolution of the amphipod radiation of Lake Baikal" (2002). Dissertations, Theses, and Masters Projects. Paper 1539616759. https://dx.doi.org/doi:10.25773/v5-axk5-fs83 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Reproduced with with permission permission of the of copyright the copyright owner. owner.Further reproductionFurther reproduction prohibited without prohibited permission. without permission. Molecular and Morphological Evolution of the Amphipod Radiation of Lake Baikal A Dissertation Presented to The Faculty of the School of Marine Science The College of William and Mary In Partial Fulfillment Of the Requirements for the Degree of Doctor of Philosophy by Kenneth S. Macdonald III 2002 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. Approval Sheet This dissertation is submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Kenneth Macdonald III Approved, September 2002 f j J. -
Multi-Locus Phylogenetic Analysis of Amphipoda Indicates a Single Origin of the Pelagic Suborder Hyperiidea
Multi-locus phylogenetic analysis of Amphipoda indicates a single origin of the pelagic suborder Hyperiidea Supplemental Material S1.Data Curation ii S2.Multiple-Sequence Alignment iii S3.Supplemental Discussion iii S4.Taxon Selection Table v Supplemental References xvii i S1. Data Curation Updated Identifications Due to their placement in preliminary gene trees, certain sequences from Browne et al. (2007) and Hurt et al. (2013) were re-identified by examining morphological vouchers pro- vided by Dr. William Browne at the University of Miami and using the dichotomous key in Zeidler (2004). The identifications of EF989686, KC428842, KC428893, and KC428944 were changed from Hyperietta par- viceps to Hyperioides sibaginis and the identifications of EF989667, KC428897, KC428846, and KC428948 were changed from Hyperoche medusarum to Hyperia sp. Based on personal communication with Dr. William Browne, the identifications of KC428923, KC428872, KC428974, and EF989655 were changed from Streetsia porcella or Glossocephalus sp. 19 to Glossocephalus rebecae, a new species described by Zeidler and Browne (2015). Excluded Sequence A number of selected sequences were removed after preliminary analyses for reasons described below. Whenever possible, these excluded sequences were replaced by selecting another available sequence for the same taxon. An 18S sequence identified as Hyperietta sibaginis (GU358617) was excluded because this is not an ac- cepted genus and species combination and does not appear to have been one in the past. The sequence is similar to Hyperioides 18S sequences and therefore may be Hyperioides sibaginis but this identification is speculative so the sequence was excluded. An 18S sequence identified as Hyperietta stephenseni (DQ378051) may be miss-identified and was excluded. -
192 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410
192 201 Geography Appendix III 396 Yellow Sea 397 China 398 Ryukyu (=Loo Choo, = Lu-Chu, =Liu-Chiu) 399 [Boreal Pacific and Atlantic] 400 [Tropical Atlantic Ocean] 401 Mindelo quadrant, 15-30° N, 15-30° W or eastward to Africa, 200+ m 402 Atlantis quadrant, 15-30° N, 30-45° W, 200+ m 403 Vema quadrant, 15-30° N, 45-60° W, 200+ m 404 Sargasso quadrant, 15-30° N, 60-75° W but only east of Caribbean islands, 200+ m 405 406 Venezuela quadrant, 09-21° N, 61-83° W, but always south and west of Greater Antilles and north and east of American continent 407 Tortugas quadrant, 20-31° N, 82-100° W, 200+ m 408 Leone quadrant, 0-15° N, 15-30° W, 200+ m 409 Doldrum (Demerara) quadrant, 0-15° N, 30-45° W, 200+ m 410 [Atlantic Eurylatitudinal] 411 Guyana (Demerara) quadrant, 0-15° N, 4 5-60° W, 200+ m 412 Guinea quadrant, 0-15° S, 15° E-0°, 200+ m 413 Chain quadrant, 0-15° S, 0-15° W, 200+ m 414 Romanche (Chain) quadrant, 0-15° S, 15-30° W, 200+ m 415 Rocas (Pernambuco) quadrant, 0-15° S, 30-45° W, 200+ m 41*6 Valdivia quadrant, 15-30° S, 15° E-0°, 200+ m 417 Trade (Rio Grande) quadrant, 15-30° S, 0-15° W, 200+ m 418 Ridge (Almeida Columbia) quadrant, 15-30° S, 15-30° W, 200+ m 419 Hotspur (Santos) quadrant, 15-3,0° S, 30-51° W, 200+ m 420 [Cosmopolitan marine] 421 [Pantropical] 422 [Marine Cosmopolitan in latitudes below 60°] 423 [Cosmopolitan in latitudes below 45°] 424 [North Atlantic] 425 [South Atlantic] 426 [North and South Atlantic] 427 [Tropical to Boreal E. -
Dictyocoela Microsporidia Diversity and Co-Diversification with Their Host, a Gammarid Species Complex (Crustacea, Amphipoda)
Quiles et al. BMC Evol Biol (2020) 20:149 https://doi.org/10.1186/s12862-020-01719-z RESEARCH ARTICLE Open Access Dictyocoela microsporidia diversity and co-diversifcation with their host, a gammarid species complex (Crustacea, Amphipoda) with an old history of divergence and high endemic diversity Adrien Quiles1,2, Rémi A. Wattier1, Karolina Bacela‑Spychalska2, Michal Grabowski2 and Thierry Rigaud1* Abstract Background: Although the processes of co‑evolution between parasites and their hosts are well known, evidence of co‑speciation remains scarce. Microsporidian intracellular parasites, due to intimate relationships with their hosts and mixed mode of transmission (horizontal but also vertical, from mother to ofspring), may represent an interesting biological model for investigating co‑speciation. Amphipod crustaceans, especially gammarids, are regular hosts of microsporidian parasites, in particular the Dictyocoela spp., which have so far been found limited to these amphipods and are known to use a vertical mode of transmission. The amphipod genus Gammarus has a diversifcation history spanning the last 50–60 Mya and an extensive cryptic diversity in most of the nominal species. Here, we investigated the degree of co‑diversifcation between Dictyocoela and Gammarus balcanicus, an amphipod with high degrees of ancient cryptic diversifcation and lineage endemism, by examining the genetic diversity of these parasites over the entire geographic range of the host. We hypothesised that the strong host diversifcation and vertical transmission of Dictyocoela would promote co‑diversifcation. Results: Using the parasite SSU rDNA as a molecular marker, analyzing 2225 host specimens from 88 sites covering whole host range, we found 31 haplogroups of Dictyocoela, 30 of which were novel, belonging to four Dictyocoela species already known to infect other Gammarus spp.