On the Current State of Taxonomy of the Baikal Lake Amphipods (Crustacea: Amphipoda) and the Typological Ways of Constructing Their System
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Amphipod Newsletter 39 (2015)
AMPHIPOD NEWSLETTER 39 2015 Interviews BIBLIOGRAPHY THIS NEWSLETTER PAGE 19 FEATURES INTERVIEWS WITH ALICJA KONOPACKA AND KRZYSZTOF JAŻDŻEWSKI PAGE 2 MICHEL LEDOYER WORLD AMPHIPODA IN MEMORIAM DATABASE PAGE 14 PAGE 17 AMPHIPOD NEWSLETTER 39 Dear Amphipodologists, Statistics from We are delighted to present to you Amphipod Newsletter 39! this Newsletter This issue includes interviews with two members of our amphipod family – Alicja Konopacka and Krzysztof Jazdzewski. Both tell an amazing story of their lives and work 2 new subfamilies as amphipodologists. Sadly we lost a member of our amphipod 21 new genera family – Michel Ledoyer. Denise Bellan-Santini provides us with a fitting memorial to his life and career. Shortly many 145 new species members of the amphipod family will gather for the 16th ICA in 5 new subspecies Aveiro, Portugal. And plans are well underway for the 17th ICA in Turkey (see page 64 for more information). And, as always, we provide you with a Bibliography and index of amphipod publications that includes citations of 376 papers that were published in 2013-2015 (or after the publication of Amphipod Newsletter 38). Again, what an amazing amount of research that has been done by you! Please continue to notify us when your papers are published. We hope you enjoy your Amphipod Newsletter! Best wishes from your AN Editors, Wim, Adam, Miranda and Anne Helene !1 AMPHIPOD NEWSLETTER 39 2015 Interview with two prominent members of the “Polish group”. The group of amphipod workers in Poland has always been a visible and valued part of the amphipod society. They have organised two of the Amphipod Colloquia and have steadily provided important results in the world of amphipod science. -
Based Phylogeny of Endemic Lake Baikal Amphipod Species Flock
Molecular Ecology (2017) 26, 536–553 doi: 10.1111/mec.13927 Transcriptome-based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection SERGEY A. NAUMENKO,*†‡ MARIA D. LOGACHEVA,*† § NINA V. POPOVA,* ANNA V. KLEPIKOVA,*† ALEKSEY A. PENIN,*† GEORGII A. BAZYKIN,*†§¶ ANNA E. ETINGOVA,** NIKOLAI S. MUGUE,††‡‡ ALEXEY S. KONDRASHOV*§§ and LEV Y. YAMPOLSKY¶¶ *Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia, †Institute for Information Transmission Problems (Kharkevich Institute) of the Russian Academy of Sciences, Moscow, Russia, ‡Genetics and Genome Biology Program, The Hospital For Sick Children, Toronto, ON, Canada, §Pirogov Russian National Research Medical University, Moscow, Russia, ¶Skolkovo Institute of Science and Technology, Skolkovo, Russia, **Baikal Museum, Irkutsk Research Center, Russian Academy of Sciences, Listvyanka, Irkutsk region, Russia, ††Laboratory of Molecular Genetics, Russian Institute for Fisheries and Oceanography (VNIRO), Moscow, Russia, ‡‡Laboratory of Experimental Embryology, Koltsov Institute of Developmental Biology, Moscow, Russia, §§Department of Ecology and Evolution, University of Michigan, Ann Arbor, MI, USA, ¶¶Department of Biological Sciences, East Tennessee State University, Johnson City, TN, USA Abstract Endemic species flocks inhabiting ancient lakes, oceanic islands and other long-lived isolated habitats are often interpreted as adaptive radiations. Yet molecular evidence for directional -
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The Author(s) BMC Genomics 2016, 17(Suppl 14):1016 DOI 10.1186/s12864-016-3357-z RESEARCH Open Access Evolution of mitochondrial genomes in Baikalian amphipods Elena V. Romanova1, Vladimir V. Aleoshin2,3, Ravil M. Kamaltynov1, Kirill V. Mikhailov2,3, Maria D. Logacheva2,3,4, Elena A. Sirotinina1, Alexander Yu. Gornov5, Anton S. Anikin5 and Dmitry Yu. Sherbakov1,6* From The International Conference on Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2016) Novosibirsk, Russia. 29 August-2 September 2016 Abstract Background: Amphipods (Crustacea) of Lake Baikal are a very numerous and diverse group of invertebrates generally believed to have originated by adaptive radiation. The evolutionary history and phylogenetic relationships in Baikalian amphipods still remain poorly understood. Sequencing of mitochondrial genomes is a relatively feasible way for obtaining a set of gene sequences suitable for robust phylogenetic inferences. The architecture of mitochondrial genomes also may provide additional information on the mechanisms of evolution of amphipods in Lake Baikal. Results: Three complete and four nearly complete mitochondrial genomes of Baikalian amphipods were obtained by high-throughput sequencing using the Illumina platform. A phylogenetic inference based on the nucleotide sequences of all mitochondrial protein coding genes revealed the Baikalian species to be a monophyletic group relative to the nearest non-Baikalian species with a completely sequenced mitochondrial genome - Gammarus duebeni.Thephylogeny of Baikalian amphipods also suggests that the shallow-water species Eulimnogammarus has likely evolved from a deep-water ancestor, however many other species have to be added to the analysis to test this hypothesis. The gene order in all mitochondrial genomes of studied Baikalian amphipods differs from the pancrustacean ground pattern. -
Molecular Data Suggest Multiple Origins and Diversification Times Of
www.nature.com/scientificreports OPEN Molecular data suggest multiple origins and diversifcation times of freshwater gammarids on the Aegean archipelago Kamil Hupało1,3*, Ioannis Karaouzas2, Tomasz Mamos1,4 & Michał Grabowski1 Our main aim was to investigate the diversity, origin and biogeographical afliations of freshwater gammarids inhabiting the Aegean Islands by analysing their mtDNA and nDNA polymorphism, thereby providing the frst insight into the phylogeography of the Aegean freshwater gammarid fauna. The study material was collected from Samothraki, Lesbos, Skyros, Evia, Andros, Tinos and Serifos islands as well as from mainland Greece. The DNA extracted was used for amplifcation of two mitochondrial (COI and 16S) and two nuclear markers (28S and EF1-alpha). The multimarker time- calibrated phylogeny supports multiple origins and diferent diversifcation times for the studied taxa. Three of the sampled insular populations most probably represent new, distinct species as supported by all the delimitation methods used in our study. Our results show that the evolution of freshwater taxa is associated with the geological history of the Aegean Basin. The biogeographic afliations of the studied insular taxa indicate its continental origin, as well as the importance of the land fragmentation and the historical land connections of the islands. Based on the fndings, we highlight the importance of studying insular freshwater biota to better understand diversifcation mechanisms in fresh waters as well as the origin of studied Aegean freshwater taxa. Te Mediterranean islands are considered natural laboratories of evolution, exhibiting high levels of diversity and endemism, making them a vital part of one of the globally most precious biodiversity hotspots and a model system for studies of biogeography and evolution1–4. -
Lake Baikal Bibliography, 1989- 1999
UC San Diego Bibliography Title Lake Baikal Bibliography, 1989- 1999 Permalink https://escholarship.org/uc/item/7dc9945d Author Limnological Institute of RAS SB Publication Date 1999-12-31 eScholarship.org Powered by the California Digital Library University of California Lake Baikal Bibliography, 1989- 1999 This is a bibliography of 839 papers published in English in 1989- 1999 by members of Limnological Institute of RAS SB and by their partners within the framework of the Baikal International Center for Ecological Research. Some of the titles are accompanied by abstracts. Coverage is on different aspects of Lake Baikal. Adov F., Takhteev V., Ropstorf P. Mollusks of Baikal-Lena nature reserve (northern Baikal). // World Congress of Malacology: Abstracts; Washington, D.C.: Unitas Malacologica; 1998: 6. Afanasyeva E.L. Life cycle of Epischura baicalensis Sars (Copepoda, Calanoida) in Lake Baikal. // VI International Conference on Copepoda: Abstracts; July 29-August 3, 1996; Oldenburg/Bremerhaven, Germany. Konstanz; 1996: 33. Afanasyeva E.L. Life cycle of Epischura baicalensis Sars (Copepoda, Calanoida) in Lake Baikal. // J. Mar. Syst.; 1998; 15: 351-357. Epischura baicalensis Sars is a dominant pelagic species of Lake Baikal zooplankton. This is endemic to Lake Baikal and inhabits the entire water column. It produces two generations per year: the winter - spring and the summer. These copepods develop under different ecological conditions and vary in the duration of life stages, reproduction time, maturation of sex products and adult males and females lifespan. The total life period of the animals from each generation is one year. One female can produce 10 egg sacks every 10 - 20 days during its life time. -
Table of Contents
TABLE OF CONTENTS Table of Contents.................................................................................................................1 Introduction..........................................................................................................................3 Amphipod Superfamilies.....................................................................................................4 Index of Families.................................................................................................................7 I Suborder Ingolfiellidea....................................................................................................12 Suborder Senticaudata Infraorder Talitrida II. Superfamily Talitroidea........................................................................20 Infraorder Corophiida III. Superfamily Aoroidea.........................................................................65 IV. Superfamily Cheluroidea.....................................................................91 V. Superfamily Chevalioidea....................................................................96 VI. Superfamily Corophioidea.................................................................100 Infraorder Caprellida VII. Superfamily Caprelloidea................................................................142 VIII. Superfamily Neomegamphopoidea................................................191 IX. Superfamily Photoidea......................................................................199 Infraorder Hadziida X. -
Amphipoda Key to Amphipoda Gammaridea
GRBQ188-2777G-CH27[411-693].qxd 5/3/07 05:38 PM Page 545 Techbooks (PPG Quark) Dojiri, M., and J. Sieg, 1997. The Tanaidacea, pp. 181–278. In: J. A. Blake stranded medusae or salps. The Gammaridea (scuds, land- and P. H. Scott, Taxonomic atlas of the benthic fauna of the Santa hoppers, and beachhoppers) (plate 254E) are the most abun- Maria Basin and western Santa Barbara Channel. 11. The Crustacea. dant and familiar amphipods. They occur in pelagic and Part 2 The Isopoda, Cumacea and Tanaidacea. Santa Barbara Museum of Natural History, Santa Barbara, California. benthic habitats of fresh, brackish, and marine waters, the Hatch, M. H. 1947. The Chelifera and Isopoda of Washington and supralittoral fringe of the seashore, and in a few damp terres- adjacent regions. Univ. Wash. Publ. Biol. 10: 155–274. trial habitats and are difficult to overlook. The wormlike, 2- Holdich, D. M., and J. A. Jones. 1983. Tanaids: keys and notes for the mm-long interstitial Ingofiellidea (plate 254D) has not been identification of the species. New York: Cambridge University Press. reported from the eastern Pacific, but they may slip through Howard, A. D. 1952. Molluscan shells occupied by tanaids. Nautilus 65: 74–75. standard sieves and their interstitial habitats are poorly sam- Lang, K. 1950. The genus Pancolus Richardson and some remarks on pled. Paratanais euelpis Barnard (Tanaidacea). Arkiv. for Zool. 1: 357–360. Lang, K. 1956. Neotanaidae nov. fam., with some remarks on the phy- logeny of the Tanaidacea. Arkiv. for Zool. 9: 469–475. Key to Amphipoda Lang, K. -
1 Amphipoda of the Northeast Pacific
Amphipoda of the Northeast Pacific (Equator to Aleutians, intertidal to abyss): XIV. Gammaroidea – an updated and expanded review Donald B. Cadien, LACSD 22Jul2004 (revised 1Mar2015) Preface The purpose of this review is to bring together information on all of the species reported to occur in the NEP fauna. It is not a straight path to the identification of your unknown animal. It is a resource guide to assist you in making the required identification in full knowledge of what the possibilities are. Never forget that there are other, as yet unreported species from the coverage area; some described, some new to science. The natural world is wonderfully diverse, and we have just scratched its surface. Introduction to the Gammaroidea The superfamily, while having both marine and freshwater members, is most prominent in epigean fresh-waters. Marine occurrences are coastal, with no superfamily members belonging to pelagic or deep-sea communities. There is a vast literature on the fresh-water members of the superfamily, particularly in European waters, where they have been studied for centuries. According to Bousfield (1982) they are a fairly recently derived group which appeared in the Tertiary. The superfamily contains a number of families not represented in the NEP, including the Acanthogammaridae, Caspicolidae, Macrohectopidae, Micruropidae, Pachyschesidae, and the Typhlogammaridae. These families are most prominent in Indo- European fresh-water habitats. The Gammaridae is poorly represented in the NEP, with only one widely distributed arctic-boreal form, and two species introduced from the Atlantic. One additional member of the family has been introduced to the waters of the saline relict Salton Sea, now landlocked in southern California (J. -
Gammarellus Angulosus (Rathke, 1843)
Gammarellus angulosus (Rathke, 1843) AphiaID: 102251 ANFÍPODE Animalia (Reino) >Arthropoda (Filo) >Crustacea (Subfilo) >Multicrustacea (Superclasse) >Malacostraca (Classe) >Eumalacostraca (Subclasse) > Peracarida (Superordem) > Amphipoda (Ordem) > Senticaudata (Subordem) > Gammarida (Infraordem) > Gammaridira (Parvordem) > Gammaroidea (Superfamilia) > Gammarellidae (Familia) Sinónimos Amathilla angulosus (Sars) Amathilla sabini (Leach) Gammarellus carcinatus (Rathke, 1837) Gammarus angulosus Rathke, 1843 Referências additional source Integrated Taxonomic Information System (ITIS). , available online at http://www.itis.gov [details] additional source Lincoln, R.J. (1979). British marine Amphipoda: Gammaridea. British Museum (Natural History): London, UK. ISBN 0-565-00818-8. vi, 658 pp. [details] basis of record Bellan-Santini, D.; Costello, M.J. (2001). Amphipoda. in: Costello, M.J. et al. (Ed.) (2001). European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50: pp. 295-308. [details] additional source Brunel, P.; Bosse, L.; Lamarche, G. (1998). Catalogue of the marine invertebrates of the estuary and Gulf of St. Lawrence. Canadian Special Publication of Fisheries and Aquatic Sciences, 126. 405 p. [details] additional source Bachelet, G.; Dauvin, J.-C.; Sorbe, J.C. (2003). An updated checklist of marine and brackish water Amphipoda (Crustacea: Peracarida) of the southern Bay of Biscay (NE Atlantic). Cah. Biol. Mar. 44(2): 121-151 [details] additional source Trott, T. J. (2004). Cobscook Bay inventory: a historical checklist of marine invertebrates spanning 162 years. Northeastern Naturalist. 11, 261-324., available online at http://www.gulfofmaine.org/kb/files/9793/TROTT-Cobscook%20List.pdf [details] 1 additional source Muller, Y. (2004). Faune et flore du littoral du Nord, du Pas-de-Calais et de la Belgique: inventaire. -
Options for the Control of Dikerogammarus Villosus (Killer Shrimp) and Other Invasive Amphipods
Management of Biological Invasions (2021) Volume 12, Issue 3: 662–684 CORRECTED PROOF Management in Practice Options for the control of Dikerogammarus villosus (killer shrimp) and other invasive amphipods Louisa E. Wood1,#,*, Emily R.C. Smith2,#, Jamie Bojko3,4 and Paul Stebbing1,5 1Centre for Environment Fisheries and Aquaculture Science, Weymouth, Dorset, DT4 8UB, UK 2Angling Trust, The Old Police Station, Wharncliffe Rd, Ilkeston, DE7 5GF, UK 3National Horizons Centre, Teesside University, Darlington, DL1 1HG, UK 4School of Health and Life Sciences, Teesside University, Middlesbrough, TS1 3BA, UK 5APEM Ltd, A17 Embankment, Business Park, Heaton Mersey, Manchester, SK4 3GN, UK #These authors contributed equally to the writing of this manuscript *Corresponding author E-mail: [email protected] Citation: Wood LE, Smith ERC, Bojko J, Stebbing P (2021) Options for the control Abstract of Dikerogammarus villosus (killer shrimp) and other invasive amphipods. Aquatic invasions are a major ecological and socio-economic concern. Management Management of Biological Invasions 12(3): of invasive aquatic populations requires a robust understanding of the effectiveness 662–684, https://doi.org/10.3391/mbi.2021.12.3.10 and suitability of control methods. In this review, we consider multiple control options Received: 17 December 2020 for the management of invasive aquatic amphipods, exploring their efficacy and Accepted: 25 March 2021 application constraints. Technological opportunities (pheromone, RNAi, biotechnologies) and gaps in our understanding around control mechanisms are identified, with the Published: 27 April 2021 aim to improve management success of this order. Within this review, the UK Thematic editor: Calum MacNeil invasion of the killer shrimp, Dikerogammarus villosus (Sowinsky, 1894) is used as Copyright: © Wood et al. -
An Evolutionary Perspective on the Ponto–Caspian Peracarids
505 The “Crustacean Seas” — an evolutionary perspective on the Ponto–Caspian peracarids Melania E.A. Cristescu and Paul D.N. Hebert Abstract: A spectacular adaptive radiation of crustaceans has occurred in the Black, Caspian, and Aral seas. This study tests several evolutionary scenarios based on the extent of genetic differentiation and the phylogenetic relation- ships among endemic mysids and gammarid amphipods from the Black and Caspian seas. Molecular phylogenies for these taxa were based on two mitochondrial genes: cytochrome c oxidase subunit I and the large ribosomal RNA sub- unit (16S), and one nuclear gene, the large ribosomal RNA subunit (28S). The results support the monophyly of the Ponto–Caspian gammarids (genera Dikerogammarus, Echinogammarus, Obesogammarus, and Pontogammarus), suggest- ing their origin from one colonization event. By contrast, several colonization events preceded the radiation of the Ponto–Caspian mysids (genera Limnomysis and Paramysis). Levels of intraspecific divergence were variable, with mysids showing either no geographic structure or deep genetic splits reflecting a long history of reproductive isolation between populations in marine settings and those in fresh waters. These findings suggest that the diversity of the Ponto–Caspian crustaceans has been underestimated and that species regarded as euryhaline are often composed of dis- tinct evolutionary groups whose taxonomic status should be reevaluated. Résumé : Il s’est produit une extraordinaire radiation des crustacés dans la mer Noire, la mer Caspienne et la mer d’Aral. Nous évaluons plusieurs scénarios évolutifs basés sur l’étendue de la différentiation génétique et les relations phylogénétiques chez les mysidés et les amphipodes gammaridés endémiques des mers Noire et Caspienne. -
Global Diversity of Amphipods (Amphipoda; Crustacea) in Freshwater
Hydrobiologia (2008) 595:241–255 DOI 10.1007/s10750-007-9020-6 FRESHWATER ANIMAL DIVERSITY ASSESSMENT Global diversity of amphipods (Amphipoda; Crustacea) in freshwater R. Va¨ino¨la¨ Æ J. D. S. Witt Æ M. Grabowski Æ J. H. Bradbury Æ K. Jazdzewski Æ B. Sket Ó Springer Science+Business Media B.V. 2007 Abstract Amphipods are brooding peracaridan abundant in cool and temperate environments; they crustaceans whose young undergo direct develop- are particularly diversified in subterranean environ- ment, with no independent larval dispersal stage. ments and in running waters (fragmented habitats), Most species are epibenthic, benthic, or subterranean. and in temperate ancient lakes, but are notably rare in There are some 1,870 amphipod species and subspe- the tropics. Of the described freshwater taxa 70% are cies recognized from fresh or inland waters world- Palearctic, 13% Nearctic, 7% Neotropical, 6% Aus- wide at the end of 2005. This accounts for 20% of the tralasian and 3% Afrotropical. Approximately 45% of total known amphipod diversity. The actual diversity the taxa are subterranean; subterranean diversity is may still be several-fold. Amphipods are most highest in the karst landscapes of Central and Southern Europe (e.g., Niphargidae), North America (Crangonyctidae), and Australia (Paramelitidae). The Guest editors: E. V. Balian, C. Le´veˆque, H. Segers and K. Martens majority of Palearctic epigean amphipods are in the Freshwater Animal Diversity Assessment superfamily Gammaroidea, whereas talitroid amphi- pods (Hyalella) account for all Neotropic and much R. Va¨ino¨la¨ (&) of the Nearctic epigean fauna. Major concentrations Finnish Museum of Natural History, University of of endemic species diversity occur in Southern Helsinki, POB 17, 00014 Helsinki, Finland e-mail: risto.vainola@helsinki.fi Europe, Lake Baikal, the Ponto-Caspian basin, Southern Australia (including Tasmania), and the J.