Australia As a Major Evolutionary Centre for Amphipoda (Crustacea)
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On the Current State of Taxonomy of the Baikal Lake Amphipods (Crustacea: Amphipoda) and the Typological Ways of Constructing Their System
Arthropoda Selecta 28(3): 374–402 © ARTHROPODA SELECTA, 2019 On the current state of taxonomy of the Baikal Lake amphipods (Crustacea: Amphipoda) and the typological ways of constructing their system Î ñîâðåìåííîì ñîñòîÿíèè òàêñîíîìèè áàéêàëüñêèõ àìôèïîä (Crustacea: Amphipoda) è òèïîëîãè÷åñêîì ñïîñîáå ïîñòðîåíèÿ èõ ñèñòåìû V.V. Takhteev1, 2 Â.Â. Òàõòååâ1, 2 1 Department of Biological and Soil Science at Irkutsk State University, Karl Marx St. 1, Irkutsk 664003, Russia. E-mail: [email protected] 1 Иркутский государственный университет, биолого-почвенный факультет, ул. К. Маркса, 1, Иркутск 664003, Россия. E-mail: [email protected] 2 Baikal Museum of Irkutsk Scientific Center SB RAS, Akademicheskaya St. 1, Listvyanka Settl., Irkutsk Region 664520, Russia. 2 Байкальский Музей Иркутского научного центра Сибирского отделения Российской академии наук, ул. Академическая, 1, пос. Листвянка Иркутской обл. 664520, Россия. KEY WORDS: amphipods, Lake Baikal, taxonomy, taxonomic inflation, archetype, core, deviations, estab- lishment of families. КЛЮЧЕВЫЕ СЛОВА: амфиподы, озеро Байкал, таксономия, таксономическая инфляция, архетип, ядро, отклонения, установление семейств. Editorial note On the publication “On the current state of taxonomy of the Baikal Lake amphipods (Crustacea, Amphipoda) and the typological ways of constructing their system” by V.V. Takhteev In this issue we present an extensive article prepared by Prof. Vadim V. Takhteev, which is based on his long time effort in the study of diversity of amphipods in Lake Baikal and its watershed. This paper is highly polemical and may even seem either archaic or heretical in the time of domination of the phylogenetic paradigms in systematics. The author advocates classical morphological taxonomy, which own tradition, methods (disregarding whether we call it typology or not) and the language are significantly older than the modern phylogenetic approach. -
Torix Rickettsia Are Widespread in Arthropods and Reflect a Neglected Symbiosis
GigaScience, 10, 2021, 1–19 doi: 10.1093/gigascience/giab021 RESEARCH RESEARCH Torix Rickettsia are widespread in arthropods and Downloaded from https://academic.oup.com/gigascience/article/10/3/giab021/6187866 by guest on 05 August 2021 reflect a neglected symbiosis Jack Pilgrim 1,*, Panupong Thongprem 1, Helen R. Davison 1, Stefanos Siozios 1, Matthew Baylis1,2, Evgeny V. Zakharov3, Sujeevan Ratnasingham 3, Jeremy R. deWaard3, Craig R. Macadam4,M. Alex Smith5 and Gregory D. D. Hurst 1 1Institute of Infection, Veterinary and Ecological Sciences, Faculty of Health and Life Sciences, University of Liverpool, Leahurst Campus, Chester High Road, Neston, Wirral CH64 7TE, UK; 2Health Protection Research Unit in Emerging and Zoonotic Infections, University of Liverpool, 8 West Derby Street, Liverpool L69 7BE, UK; 3Centre for Biodiversity Genomics, University of Guelph, 50 Stone Road East, Guelph, Ontario N1G2W1, Canada; 4Buglife – The Invertebrate Conservation Trust, Balallan House, 24 Allan Park, Stirling FK8 2QG, UK and 5Department of Integrative Biology, University of Guelph, Summerlee Science Complex, Guelph, Ontario N1G 2W1, Canada ∗Correspondence address. Jack Pilgrim, Institute of Infection, Veterinary and Ecological Sciences, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, UK. E-mail: [email protected] http://orcid.org/0000-0002-2941-1482 Abstract Background: Rickettsia are intracellular bacteria best known as the causative agents of human and animal diseases. Although these medically important Rickettsia are often transmitted via haematophagous arthropods, other Rickettsia, such as those in the Torix group, appear to reside exclusively in invertebrates and protists with no secondary vertebrate host. Importantly, little is known about the diversity or host range of Torix group Rickettsia. -
Additions to and Revisions of the Amphipod (Crustacea: Amphipoda) Fauna of South Africa, with a List of Currently Known Species from the Region
Additions to and revisions of the amphipod (Crustacea: Amphipoda) fauna of South Africa, with a list of currently known species from the region Rebecca Milne Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa & Charles L. Griffiths* Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa E-mail: [email protected] (with 13 figures) Received 25 June 2013. Accepted 23 August 2013 Three species of marine Amphipoda, Peramphithoe africana, Varohios serratus and Ceradocus isimangaliso, are described as new to science and an additional 13 species are recorded from South Africa for the first time. Twelve of these new records originate from collecting expeditions to Sodwana Bay in northern KwaZulu-Natal, while one is an introduced species newly recorded from Simon’s Town Harbour. In addition, we collate all additions and revisions to the regional amphipod fauna that have taken place since the last major monographs of each group and produce a comprehensive, updated faunal list for the region. A total of 483 amphipod species are currently recognized from continental South Africa and its Exclusive Economic Zone . Of these, 35 are restricted to freshwater habitats, seven are terrestrial forms, and the remainder either marine or estuarine. The fauna includes 117 members of the suborder Corophiidea, 260 of the suborder Gammaridea, 105 of the suborder Hyperiidea and a single described representative of the suborder Ingolfiellidea. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Crustacea: Amphipoda: Dogielinotidae) from the Nipa Palm in Thailand, with an Updated Key to the Genera
RESEARCH ARTICLE Discovery of a new genus and species of dogielinotid amphipod (Crustacea: Amphipoda: Dogielinotidae) from the Nipa palm in Thailand, with an updated key to the genera 1,2 3 4 Koraon WongkamhaengID *, Pongrat Dumrongrojwattana , Myung-Hwa Shin a1111111111 a1111111111 1 Department of Zoology, Faculty of Science, Kasetsart University, Bangkok, Thailand, 2 Coastal Oceanography and Climate Change Research Center, Prince of Songkla University, Hatyai, Songkhla, a1111111111 Thailand, 3 Department of Biology, Faculty of Science, Burapha University, Bangsaen, Chonburi, Thailand, a1111111111 4 National Marine Biodiversity Institute of Korea, Seocheon, South Korea a1111111111 * [email protected] Abstract OPEN ACCESS Citation: Wongkamhaeng K, Dumrongrojwattana During a scientific survey, a new genus of the dogielinotid amphipoda was found in the Nipa P, Shin M (2018) Discovery of a new genus and palm (Nypa fruticans) in Bang Krachao Urban Oasis, Samut Prakan Province, Thailand. We species of dogielinotid amphipod (Crustacea: placed this new genus, Allorchestoides gen. nov., within the family Dogielinotidae. The new Amphipoda: Dogielinotidae) from the Nipa palm in Thailand, with an updated key to the genera. PLoS taxa can be easily distinguished from the remaining genera by differences in the incisor of ONE 13(10): e0204299. https://doi.org/10.1371/ the left and right mandibles, apical robust setae of the maxilla 1, and the large coxa and journal.pone.0204299 strong obtuse palm in the female gnathopod 1. The type species of Allorchestoides gen. Editor: Feng Zhang, Nanjing Agricultural University, nov., Allorchestoides rosea n. sp., is described here in, with an updated key to the genera of CHINA the family Dogielinotidae. -
Allocrangonyx Hubrichti)
Conservation Assessment for Hubricht’s Long-Tailed Amphipod (Allocrangonyx Hubrichti) (From Gardner, 1986) USDA Forest Service, Eastern Region October 2002 Julian J. Lewis, Ph.D. J. Lewis & Associates, Biological Consulting 217 W. Carter Avenue Clarksville, IN 47129 [email protected] MARK TWAIN NATIONAL FOREST This Conservation Assessment was prepared to compile the published and unpublished information on Allocrangonyx hubrichti. It does not represent a management decision by the U.S. Forest Service. Though the best scientific information available was used and subject experts were consulted in preparation of this document, it is expected that new information will arise. In the spirit of continuous learning and adaptive management, if you have information that will assist in conserving the subject community and associated taxa, please contact the Eastern Region of the Forest Service Threatened and Endangered Species Program at 310 Wisconsin Avenue, Milwaukee, Wisconsin 53203. Conservation Assessment for Hubricht’s Long-Tailed Amphipod (Allocrangonyx Hubrichti) 2 Table of Contents EXECUTIVE SUMMARY.....................................................................4 NOMENCLATURE AND TAXONOMY...............................................4 DESCRIPTION OF SPECIES................................................................4 LIFE HISTORY......................................................................................4 HABITAT ...............................................................................................5 DISTRIBUTION -
Zootaxa, Ceinidae
Zootaxa 2260: 328–332 (2009) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2009 · Magnolia Press ISSN 1175-5334 (online edition) Ceinidae* CHARLES OLIVER COLEMAN Humboldt-University, Museum für Naturkunde Berlin, Abteilung Sammlungen, D-10099 Berlin, Germany. ([email protected]) * In: Lowry, J.K. & Myers, A.A. (Eds) (2009) Benthic Amphipoda (Crustacea: Peracarida) of the Great Barrier Reef, Australia. Zootaxa, 2260, 1–930. Abstract Ceina gerlachae sp. nov. is described. It differs in the habitus from the closely related Ceina carinata (Pirlot) in the rounded anterior process of pereonite 1, an upright carina on pleonite 1, a short process on pleonite 3 and a few characters on the maxillipeds. Key words: Crustacea, Amphipoda, Ceinidae, Great Barrier Reef, Australia, taxonomy, new species, Ceina gerlachae Introduction The genus Ceina previously comprised only four species, which were classified until 1972 as Phliantidae. From these they differ by laterally compressed rather than dorsoventrally depressed bodies and an unflexed urosome. J.L. Barnard 1972 erected the family Ceinidae. Only one species of Ceina has been previously recorded from Australia: Ceina wannape Barnard, 1972. Materials and methods The descriptions were generated from a DELTA database (Dallwitz 2005). All material is lodged in the Australian Museum, Sydney (AM). A set of colour plates, a list of standard abbreviations and detailed station data is available in Lowry & Myers (2009). Illustrations were made using the methods described in Coleman (2003, 2006). A CD (Benthic Amphipoda (Crustacea: Peracarida) of the Great Barrier Reef: Interactive Keys) is available with the book or the keys can be accessed at the crustacea.net website. -
Biodiversity of the Gammaridea and Corophiidea (Crustacea
Biodiversity of the Gammaridea and Corophiidea (Crustacea: Amphipoda) from the Beagle Channel and the Straits of Magellan: a preliminary comparison between their faunas Ignacio L. Chiesa1,2 & Gloria M. Alonso2 1 Laboratorio de Artrópodos, Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina; ichiesa@ bg.fcen.uba.ar 2 Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”, Div. Invertebrados, Av. Ángel Gallardo 470, C1405DJR, Buenos Aires, Argentina; [email protected] Received 10-XI-2005. Corrected 25-IV-2006. Accepted 16-III-2007. Abstract: Gammaridea and Corophiidea amphipod species from the Beagle Channel and the Straits of Magellan were listed for the first time; their faunas were compared on the basis of bibliographic information and material collected in one locality at Beagle Channel (Isla Becasses). The species Schraderia serraticauda and Heterophoxus trichosus (collected at Isla Becasses) were cited for the first time for the Magellan region; Schraderia is the first generic record for this region. A total of 127 species were reported for the Beagle Channel and the Straits of Magellan. Sixty-two species were shared between both passages (71.3 % similarity). The amphipod species represented 34 families and 83 genera. The similarity at genus level was 86.4 %, whereas 23 of the 34 families were present in both areas. For all species, 86 had bathymetric ranges above 100 m and only 12 species ranged below 200 m depth. In the Beagle Channel, only one species had a depth record greater than 150 m, whereas in the Straits of Magellan, 15 had such a record. -
The 17Th International Colloquium on Amphipoda
Biodiversity Journal, 2017, 8 (2): 391–394 MONOGRAPH The 17th International Colloquium on Amphipoda Sabrina Lo Brutto1,2,*, Eugenia Schimmenti1 & Davide Iaciofano1 1Dept. STEBICEF, Section of Animal Biology, via Archirafi 18, Palermo, University of Palermo, Italy 2Museum of Zoology “Doderlein”, SIMUA, via Archirafi 16, University of Palermo, Italy *Corresponding author, email: [email protected] th th ABSTRACT The 17 International Colloquium on Amphipoda (17 ICA) has been organized by the University of Palermo (Sicily, Italy), and took place in Trapani, 4-7 September 2017. All the contributions have been published in the present monograph and include a wide range of topics. KEY WORDS International Colloquium on Amphipoda; ICA; Amphipoda. Received 30.04.2017; accepted 31.05.2017; printed 30.06.2017 Proceedings of the 17th International Colloquium on Amphipoda (17th ICA), September 4th-7th 2017, Trapani (Italy) The first International Colloquium on Amphi- Poland, Turkey, Norway, Brazil and Canada within poda was held in Verona in 1969, as a simple meet- the Scientific Committee: ing of specialists interested in the Systematics of Sabrina Lo Brutto (Coordinator) - University of Gammarus and Niphargus. Palermo, Italy Now, after 48 years, the Colloquium reached the Elvira De Matthaeis - University La Sapienza, 17th edition, held at the “Polo Territoriale della Italy Provincia di Trapani”, a site of the University of Felicita Scapini - University of Firenze, Italy Palermo, in Italy; and for the second time in Sicily Alberto Ugolini - University of Firenze, Italy (Lo Brutto et al., 2013). Maria Beatrice Scipione - Stazione Zoologica The Organizing and Scientific Committees were Anton Dohrn, Italy composed by people from different countries. -
Crustacea: Amphipoda), Mainly Its Echinogammarus Clade in SW Europe
ACTA BIOLOGICA SLOVENICA LJUBLJANA 2018 Vol. 61, Št. 1: 93–102 Family Gammaridae (Crustacea: Amphipoda), mainly its Echinogammarus clade in SW Europe. Further elucidation of its phylogeny and taxonomy Družina Gammaridae (Crustacea: Amphipoda), posebej njena veja Echinogammarus v JZ Evropi. Nadaljnja razjasnitev filogenetskih in taksonomskih odnosov Boris Sketa*, Zhonge Houb a Biology department, Biotechnical faculty, University of Ljubljana, p.p. 2995, 1001 Ljubljana, Slovenia b Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China *correspondence: [email protected] Abstract: Most parts of the Echinogammarus clade of Gammaridae have been appropriately classified with the help of a molecular analysis, ultimately freed of the Echinogammarus-Chaetogammarus malediction. Among defining morphological cha- racters, the gnathopod interrelations are comparatively well congruent with molecular markers. Genus Homoeogammarus distribution area extended from Mediterranean to Atlantic islands. Chaetogammarus and Trichogammarus are firm members of the morphologically very diversified Ponto-Caspian group genera, not closely related to the morphologically similar Echinogammarus, Marinogammarus or Homoeogam- marus. Genus Pectenogammarus (along with Neogammarus and Laurogammarus) synonymized with Homoeogammarus. Parhomoeogammarus diagnose corrected, based on topotype samples of the type species. Freshwater species of the ‘European Eulimnogammarus’ in SW Europe defined as Iberogammarus gen. nov. Continental Homoeogammarus-like, but -
Amphipod Newsletter 39 (2015)
AMPHIPOD NEWSLETTER 39 2015 Interviews BIBLIOGRAPHY THIS NEWSLETTER PAGE 19 FEATURES INTERVIEWS WITH ALICJA KONOPACKA AND KRZYSZTOF JAŻDŻEWSKI PAGE 2 MICHEL LEDOYER WORLD AMPHIPODA IN MEMORIAM DATABASE PAGE 14 PAGE 17 AMPHIPOD NEWSLETTER 39 Dear Amphipodologists, Statistics from We are delighted to present to you Amphipod Newsletter 39! this Newsletter This issue includes interviews with two members of our amphipod family – Alicja Konopacka and Krzysztof Jazdzewski. Both tell an amazing story of their lives and work 2 new subfamilies as amphipodologists. Sadly we lost a member of our amphipod 21 new genera family – Michel Ledoyer. Denise Bellan-Santini provides us with a fitting memorial to his life and career. Shortly many 145 new species members of the amphipod family will gather for the 16th ICA in 5 new subspecies Aveiro, Portugal. And plans are well underway for the 17th ICA in Turkey (see page 64 for more information). And, as always, we provide you with a Bibliography and index of amphipod publications that includes citations of 376 papers that were published in 2013-2015 (or after the publication of Amphipod Newsletter 38). Again, what an amazing amount of research that has been done by you! Please continue to notify us when your papers are published. We hope you enjoy your Amphipod Newsletter! Best wishes from your AN Editors, Wim, Adam, Miranda and Anne Helene !1 AMPHIPOD NEWSLETTER 39 2015 Interview with two prominent members of the “Polish group”. The group of amphipod workers in Poland has always been a visible and valued part of the amphipod society. They have organised two of the Amphipod Colloquia and have steadily provided important results in the world of amphipod science. -
Based Phylogeny of Endemic Lake Baikal Amphipod Species Flock
Molecular Ecology (2017) 26, 536–553 doi: 10.1111/mec.13927 Transcriptome-based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection SERGEY A. NAUMENKO,*†‡ MARIA D. LOGACHEVA,*† § NINA V. POPOVA,* ANNA V. KLEPIKOVA,*† ALEKSEY A. PENIN,*† GEORGII A. BAZYKIN,*†§¶ ANNA E. ETINGOVA,** NIKOLAI S. MUGUE,††‡‡ ALEXEY S. KONDRASHOV*§§ and LEV Y. YAMPOLSKY¶¶ *Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia, †Institute for Information Transmission Problems (Kharkevich Institute) of the Russian Academy of Sciences, Moscow, Russia, ‡Genetics and Genome Biology Program, The Hospital For Sick Children, Toronto, ON, Canada, §Pirogov Russian National Research Medical University, Moscow, Russia, ¶Skolkovo Institute of Science and Technology, Skolkovo, Russia, **Baikal Museum, Irkutsk Research Center, Russian Academy of Sciences, Listvyanka, Irkutsk region, Russia, ††Laboratory of Molecular Genetics, Russian Institute for Fisheries and Oceanography (VNIRO), Moscow, Russia, ‡‡Laboratory of Experimental Embryology, Koltsov Institute of Developmental Biology, Moscow, Russia, §§Department of Ecology and Evolution, University of Michigan, Ann Arbor, MI, USA, ¶¶Department of Biological Sciences, East Tennessee State University, Johnson City, TN, USA Abstract Endemic species flocks inhabiting ancient lakes, oceanic islands and other long-lived isolated habitats are often interpreted as adaptive radiations. Yet molecular evidence for directional