A4163 - Waller - Plant - All.Vp Monday, October 29, 2001 4:37:45 PM Color Profile: Disabled Composite Default Screen

Total Page:16

File Type:pdf, Size:1020Kb

A4163 - Waller - Plant - All.Vp Monday, October 29, 2001 4:37:45 PM Color Profile: Disabled Composite Default Screen Color profile: Disabled Composite Default screen Plant Pathologist’s Pocketbook 3rd Edition 1 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:45 PM Color profile: Disabled Composite Default screen 2 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:45 PM Color profile: Disabled Composite Default screen Plant Pathologist’s Pocketbook 3rd Edition Edited by J.M. Waller, J.M. Lenné and S.J. Waller CABI Publishing 3 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:46 PM Color profile: Disabled Composite Default screen CABI Publishing is a division of CAB International CABI Publishing CABI Publishing CAB International 10 E 40th Street Wallingford Suite 3203 Oxon OX10 8DE New York, NY 10016 UK USA Tel: +44 (0)1491 832111 Tel: +1 212 481 7018 Fax: +44 (0)1491 833508 Fax: +1 212 686 7993 Email: [email protected] Email: [email protected] Web site: www.cabi-publishing.org ©CAB International 2002. All rights reserved. No part of this publication may be reproduced in any form or by any means, electronically, mechanically, by photocopying, recording or otherwise, without the prior permission of the copyright owners. A catalogue record for this book is available from the British Library, London, UK. Library of Congress Cataloging-in-Publication Data Plant pathologist’s pocketbook / edited by J.M. Waller, J.M. Lenné and S.J. Waller. --3rd ed. p. cm. Includes bibliographical references (p. ). ISBN 0-85199-458-X (hardcover) -- ISBN 0-85199-459-8 (pbk.) 1. Plant diseases--Handbooks, manuals, etc. 2. Plant diseases--Bibliography. I. Waller, J. M. II. Lenné, Jillian M. III. Waller, S. J. (Sarah J.) SB601 .P57 2001 632′.3--dc21 2001020356 Pbk ISBN 0 85199 459 8 Hbk ISBN 0 85199 458 X Typeset by AMA DataSet Ltd, UK. Printed and bound in the UK by Biddles Ltd, Guildford and King’s Lynn. 4 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Tuesday, November 06, 2001 3:27:30 PM Color profile: Disabled Composite Default screen Contents Contents Contributors viii Preface to the 3rd Edition x Part I: Recognition and Evaluation of Plant Diseases 1 Landmarks in Plant Pathology 1 2 Some Major Plant Diseases 4 J.M. Lenné 3 Surveys and Sampling 19 M. Holderness 4 Disease and Yield Loss Assessment 25 P.S. Teng and W.C. James 5 Postharvest Diseases 39 Revised by J.M. Waller 6 General Bibliography of Plant Pathology 55 Compiled by J.M. Waller 7 Bibliography of Crop and Plant Diseases 60 Compiled by J.M. Waller 8 Collection and Dispatch of Plant Material 72 J.M. Waller and B.J. Ritchie Part 2: Causes of Plant Disease 9 Fungi as Plant Pathogens 75 J.M. Waller and P.F. Cannon v 5 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:46 PM Color profile: Disabled Composite Default screen vi Contents 10 Bacteria and Plant Disease 94 G. Saddler 11 Virus Diseases 108 Revised by J.M. Waller 12 Phytoplasma Plant Pathogens 126 P. Jones 13 Plant Parasitic Nematodes 140 J. Bridge and T.D. Williams 14 Insect and Other Arthropod Pests 163 G.W. Watson 15 Weeds 175 P.J. Terry and C. Parker 16 Parasitic Higher Plants 183 C. Parker 17 Non-infectious Disorders 190 J.M. Lenné 18 Air Pollution Effects and Injury 195 A.R. Wellburn 19 Effects of Climate Change 203 S. Chakraborty Part 3: Disease Diagnosis and Investigation 20 Detection and Isolation of Fungal and Bacterial Pathogens 208 J.M. Waller 21 Microscopy 216 J.M. Waller 22 Immunological Techniques 221 F.M. Dewey 23 Biochemical and Molecular Techniques 229 P. Bridge 24 Inoculation 245 J.M. Waller 25 Epidemic Modelling and Disease Forecasting 252 M.W. Shaw 26 Design of Experiments 266 J. Riley Part 4: Disease Management 27 Plant Health and Quarantine 279 J.M. Waller 28 Regional and Country Lists of Plant Diseases 287 Revised by J.M. Waller 29 Seed Health 309 Revised by J.M. Waller 30 Cultural Control 318 A.J. Termorshuizen 6 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:46 PM Color profile: Disabled Composite Default screen Contents vii 31 Disease Resistance 328 J.M. Waller and J.M. Lenné 32 Fungicides 336 D. Hollomon 33 The Application of Chemicals for Plant Disease Control 345 G.A. Matthews 34 Biological Control of Fungal Plant Pathogens 354 S.S. Navi and R. Bandyopadhyay 35 Plant Pathogens for Biological Control of Weeds 366 H.C. Evans Part 5: General Techniques and Information 36 Safety in the Laboratory 379 B.J. Ritchie 37 Culturing, Preservation and Maintenance of Fungi 384 D. Smith 38 Mycological Media and Methods 410 B.J. Ritchie 39 Photography 432 E. Boa 40 Standards and Measurements 446 Compiled by J.M. Waller 41 Publication 454 J.M. Waller 42 Electronic Databases and Information Technology in Plant Pathology 461 H.L. Crowson and L.A. McGillivray 43 Glossary of Plant Pathological Terms 470 Compiled by J.M. Lenné 44 Useful Addresses 487 General Index 491 Diseases and Pathogens Index 505 7 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:46 PM Color profile: Disabled Composite Default screen Contributors Contributors R. Bandyopadhyay, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Andhra Pradesh 502 324, India E. Boa, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK J. Bridge, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK P. Bridge, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK and School of Biological and Chemical Sciences, Birkbeck, University of London, Malet St, London WC1E 7HX, UK P.F. Cannon, CABI Bioscience UKCentre, Bakeham Lane, Egham, Surrey TW20 9TY, UK S. Chakraborty, CSIRO Plant Industry, CRC Tropical Plant Protection, University of Queensland, Queensland 4072, Australia H.L. Crowson, CAB International, Wallingford, Oxfordshire OX10 8DE, UK F.M. Dewey, Plant Sciences Department, University of Oxford, South Parks Road, Oxford OX1 3RB, UK H.C. Evans, CABI Bioscience UK Centre, Silwood Park, Ascot, Berkshire SL5 7PY, UK M. Holderness, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK D. Hollomon, Long Ashton Research Station, University of Bristol, Long Ashton, Bristol BS18 9AF, UK W.C. James, ISAAA AmeriCenter, c/o Cornell University, Ithaca, NY 14853, USA P. Jones, Plant Pathogen Interactions (PPI), IACR-Rothamsted, Harpenden, Hertfordshire AL5 2JQ, UK viii 8 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:46 PM Color profile: Disabled Composite Default screen Contributors ix J.M. Lenné, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Andhra Pradesh 502 324, India G.A. Matthews, International Pesticide Application Research Centre, Imperial College at Silwood Park, Ascot, Berkshire SL5 7PY, UK L.A. McGillivray, CAB International, Wallingford, Oxfordshire OX10 8DE, UK S.S. Navi, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Andhra Pradesh 502 324, India C. Parker, 5 Royal York Crescent, Bristol BS8 4JZ, UK J. Riley, IACR-Rothamsted, Harpenden, Hertfordshire AL5 2JQ, UK B.J. Ritchie, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK G. Saddler, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK M.W. Shaw, Department of Agricultural Botany, School of Plant Sciences, The University of Reading, Reading RG6 6AS, UK D. Smith, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK P.S. Teng, Monsanto Company, Kings Court II Building, 2129 Chino Roces Avenue, Makati City, Philippines A.J. Termorshuizen, Biological Farming Systems, Wageningen University, Marijkeweg 22, 6709 PG Wageningen, The Netherlands P.J. Terry, Long Ashton Research Station, University of Bristol, Long Ashton, Bristol BS18 9AF, UK J.M. Waller, CABI Bioscience UK Centre, Bakeham Lane, Egham, Surrey TW20 9TY, UK S.J. Waller, 45 St Michaels, Longstanton, Cambridge, UK G.W. Watson, Entomology Department, The Natural History Museum, Cromwell Road, London SW7 5BD, UK A.R. Wellburn, formerly of Division of Biological Sciences, Lancaster University, Lancaster LA1 4YQ, UK T.D. Williams, 4 Warren Park, West Hill, Ottery St Mary, Devon EX11 1TN, UK 9 Z:\Customer\CABI\A4084 - Waller - Plant Pathologists Pocketbook\A4163 - Waller - Plant - All.vp Monday, October 29, 2001 4:37:46 PM Color profile: Disabled Composite Default screen Preface to the 3rd Edition Preface to the 3rd Edition The second edition of the Plant Pathologist’s Pocketbook published in 1983 is now well out of date and this edition has been completely reorganized to create a format more suitable to the current needs of plant pathologists. The traditional and well-known title has been retained although the book is now rather larger than ‘pocketbook’ size. The contents have been arranged into five sections covering the main activity groups in plant pathology. Several new topics have been added including chapters covering epidemiology and disease forecasting, disease resistance, biochemical and molecular techniques, and electronic databases and information technology. Other topics covered in the second edition have all been revised or completely rewritten and the associated bibliographies updated. In order to keep the pocket book to size it has been necessary to restrict accounts of most subjects to succinct overviews, but hope- fully the attached bibliographies will provide sufficient information to assist pathologists with their work.
Recommended publications
  • Autotrophy in Groundwater Ecosystems
    Dissertation der Fakultät für Biologie der Ludwig-Maximilians-Universität München Autotrophy in Groundwater Ecosystems Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades vorgelegt von Claudia Sabine Kellermann aus München München im November 2008 1. Gutachter: Prof. Dr. Anton Hartmann, LMU München 2. Gutachter: Prof. Dr. Dirk Schüler, LMU München Tag der Abgabe: 06.11.2008 Tag des Promotionskolloquiums: 15.07.2009 Publications originating from this Thesis Chapter 2 Kellermann, C & Griebler, C (2008) Thiobacillus thiophilus D24TNT sp. nov., a chemolithoautotrophic, thiosulfate-oxidizing bacterium isolated from contaminated aquifer sediments. International Journal of Systematic and Evolutionary Microbiology (IJSEM), 59: 583-588 Chapter 3 Kellermann, C, Selesi, D, Hartmann, A, Lee, N, Hügler, M, Esperschütz, J, & Griebler, C (2008) Chemolithoautotrophy in an organically polluted aquifer – Potential for CO2 fixation and in situ bacterial autotrophic activity. (in preparation) Contributions Chapter 3 Enzyme assays were performed in cooperation with Dr. Michael Hügler at the IFM- GEOMAR, Kiel, Germany. Chapter 4 FISH-MAR analysis was performed in cooperation with Prof. Dr. Natuschka Lee at the Technical University Munich, Germany. Enzyme assays were performed in cooperation with Dr. Michael Hügler at the IFM-GEOMAR, Kiel, Germany. PLFA analysis was performed by Dr. Jürgen Esperschütz at the Institute of Soil Ecology, Helmholtz Center Munich, Germany. I hereby confirm the above statements Claudia Kellermann Prof. Dr. Anton Hartmann Autotrophy in Groundwater Ecosystems Claudia Kellermann Abstract: The major role in global net CO2 fixation plays photosynthesis of green plants, algae and cyanobacteria, but other microorganisms are also important concerning autotrophy; i.e. autotrophic microorganisms can be found in most bacterial groups (Eubacteria) and there are even numerous representatives within the Archaea.
    [Show full text]
  • Monocyclic Components for Evaluating Disease Resistance to Cercospora Arachidicola and Cercosporidium Personatum in Peanut
    Monocyclic Components for Evaluating Disease Resistance to Cercospora arachidicola and Cercosporidium personatum in Peanut by Limin Gong A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama August 6, 2016 Keywords: monocyclic components, disease resistance Copyright 2016 by Limin Gong Approved by Kira L. Bowen, Chair, Professor of Entomology and Plant Pathology Charles Y. Chen, Associate Professor of Crop, Soil and Environmental Sciences John F. Murphy, Professor of Entomology and Plant Pathology Jeffrey J. Coleman, Assisstant Professor of Entomology and Plant Pathology ABSTRACT Cultivated peanut (Arachis hypogaea L.) is an economically important crop that is produced in the United States and throughout the world. However, there are two major fungal pathogens of cultivated peanuts, and they each contribute to substantial yield losses of 50% or greater. The pathogens of these diseases are Cercospora arachidicola which causes early leaf spot (ELS), and Cercosporidium personatum which causes late leaf spot (LLS). While fungicide treatments are fairly effective for leaf spot management, disease resistance is still the best strategy. Therefore, it is important to evaluate and compare different genotypes for their disease resistance levels. The overall goal of this study was to determine resistance levels of different peanut genotypes to ELS and LLS. The peanut genotypes (Chit P7, C1001, Exp27-1516, Flavor Runner 458, PI 268868, and GA-12Y) used in this study include two genetically modified lines (Chit P7 and C1001) that over-expresses a chitinase gene. This overall goal was addressed with three specific objectives: 1) determine suitable conditions for pathogen culture and spore production in vitro; 2) determine suitable conditions for establishing infection in the greenhouse; 3) compare ELS and LLS disease reactions of young plants to those of older plants.
    [Show full text]
  • Monilochaetes and Allied Genera of the Glomerellales, and a Reconsideration of Families in the Microascales
    available online at www.studiesinmycology.org StudieS in Mycology 68: 163–191. 2011. doi:10.3114/sim.2011.68.07 Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales M. Réblová1*, W. Gams2 and K.A. Seifert3 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43 Průhonice, Czech Republic; 2Molenweg 15, 3743CK Baarn, The Netherlands; 3Biodiversity (Mycology and Botany), Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: We examined the phylogenetic relationships of two species that mimic Chaetosphaeria in teleomorph and anamorph morphologies, Chaetosphaeria tulasneorum with a Cylindrotrichum anamorph and Australiasca queenslandica with a Dischloridium anamorph. Four data sets were analysed: a) the internal transcribed spacer region including ITS1, 5.8S rDNA and ITS2 (ITS), b) nc28S (ncLSU) rDNA, c) nc18S (ncSSU) rDNA, and d) a combined data set of ncLSU-ncSSU-RPB2 (ribosomal polymerase B2). The traditional placement of Ch. tulasneorum in the Microascales based on ncLSU sequences is unsupported and Australiasca does not belong to the Chaetosphaeriaceae. Both holomorph species are nested within the Glomerellales. A new genus, Reticulascus, is introduced for Ch. tulasneorum with associated Cylindrotrichum anamorph; another species of Reticulascus and its anamorph in Cylindrotrichum are described as new. The taxonomic structure of the Glomerellales is clarified and the name is validly published. As delimited here, it includes three families, the Glomerellaceae and the newly described Australiascaceae and Reticulascaceae. Based on ITS and ncLSU rDNA sequence analyses, we confirm the synonymy of the anamorph generaDischloridium with Monilochaetes.
    [Show full text]
  • Jordan Beans RA RMO Dir
    Importation of Fresh Beans (Phaseolus vulgaris L.), Shelled or in Pods, from Jordan into the Continental United States A Qualitative, Pathway-Initiated Risk Assessment February 14, 2011 Version 2 Agency Contact: Plant Epidemiology and Risk Analysis Laboratory Center for Plant Health Science and Technology United States Department of Agriculture Animal and Plant Health Inspection Service Plant Protection and Quarantine 1730 Varsity Drive, Suite 300 Raleigh, NC 27606 Pest Risk Assessment for Beans from Jordan Executive Summary In this risk assessment we examined the risks associated with the importation of fresh beans (Phaseolus vulgaris L.), in pods (French, green, snap, and string beans) or shelled, from the Kingdom of Jordan into the continental United States. We developed a list of pests associated with beans (in any country) that occur in Jordan on any host based on scientific literature, previous commodity risk assessments, records of intercepted pests at ports-of-entry, and information from experts on bean production. This is a qualitative risk assessment, as we express estimates of risk in descriptive terms (High, Medium, and Low) rather than numerically in probabilities or frequencies. We identified seven quarantine pests likely to follow the pathway of introduction. We estimated Consequences of Introduction by assessing five elements that reflect the biology and ecology of the pests: climate-host interaction, host range, dispersal potential, economic impact, and environmental impact. We estimated Likelihood of Introduction values by considering both the quantity of the commodity imported annually and the potential for pest introduction and establishment. We summed the Consequences of Introduction and Likelihood of Introduction values to estimate overall Pest Risk Potentials, which describe risk in the absence of mitigation.
    [Show full text]
  • Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils
    microorganisms Article Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils Nazareth Torres † , Runze Yu and S. Kaan Kurtural * Department of Viticulture and Enology, University of California Davis, 1 Shields Avenue, Davis, CA 95616, USA; [email protected] (N.T.); [email protected] (R.Y.) * Correspondence: [email protected] † Current address: Advanced Fruit and Grape Growing Group, Public University of Navarra, 31006 Pamplona, Spain. Abstract: Vineyard-living microbiota affect grapevine health and adaptation to changing environ- ments and determine the biological quality of soils that strongly influence wine quality. However, their abundance and interactions may be affected by vineyard management. The present study was conducted to assess whether the vineyard soil microbiome was altered by the use of biostimulants (arbuscular mycorrhizal fungi (AMF) inoculation vs. non-inoculated) and/or irrigation management (fully irrigated vs. half irrigated). Bacterial and fungal communities in vineyard soils were shaped by both time course and soil management (i.e., the use of biostimulants and irrigation). Regarding alpha diversity, fungal communities were more responsive to treatments, whereas changes in beta diversity were mainly recorded in the bacterial communities. Edaphic factors rarely influence bacte- rial and fungal communities. Microbial network analyses suggested that the bacterial associations Citation: Torres, N.; Yu, R.; Kurtural, were weaker than the fungal ones under half irrigation and that the inoculation with AMF led to S.K. Inoculation with Mycorrhizal the increase in positive associations between vineyard-soil-living microbes. Altogether, the results Fungi and Irrigation Management highlight the need for more studies on the effect of management practices, especially the addition Shape the Bacterial and Fungal of AMF on cropping systems, to fully understand the factors that drive their variability, strengthen Communities and Networks in Vineyard Soils.
    [Show full text]
  • Bioinformatics Prediction of Polyketide Synthase Gene Clusters from Mycosphaerella Fijiensis
    RESEARCH ARTICLE Bioinformatics Prediction of Polyketide Synthase Gene Clusters from Mycosphaerella fijiensis Roslyn D. Noar1, Margaret E. Daub2* 1 Department of Plant Pathology, North Carolina State University, Raleigh, North Carolina, 27695-7616, United States of America, 2 Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, 27695-7612, United States of America a11111 * [email protected] Abstract Mycosphaerella fijiensis, causal agent of black Sigatoka disease of banana, is a Dothideo- mycete fungus closely related to fungi that produce polyketides important for plant pathoge- OPEN ACCESS nicity. We utilized the M. fijiensis genome sequence to predict PKS genes and their gene Citation: Noar RD, Daub ME (2016) Bioinformatics clusters and make bioinformatics predictions about the types of compounds produced by Prediction of Polyketide Synthase Gene Clusters these clusters. Eight PKS gene clusters were identified in the M. fijiensis genome, placing from Mycosphaerella fijiensis. PLoS ONE 11(7): e0158471. doi:10.1371/journal.pone.0158471 M. fijiensis into the 23rd percentile for the number of PKS genes compared to other Dothi- deomycetes. Analysis of the PKS domains identified three of the PKS enzymes as non- Editor: Minou Nowrousian, Ruhr-University Bochum, GERMANY reducing and two as highly reducing. Gene clusters contained types of genes frequently found in PKS clusters including genes encoding transporters, oxidoreductases, methyl- Received: April 6, 2016 transferases, and non-ribosomal peptide synthases. Phylogenetic analysis identified a Accepted: June 16, 2016 putative PKS cluster encoding melanin biosynthesis. None of the other clusters were Published: July 7, 2016 closely aligned with genes encoding known polyketides, however three of the PKS genes Copyright: © 2016 Noar, Daub.
    [Show full text]
  • (US) 38E.85. a 38E SEE", A
    USOO957398OB2 (12) United States Patent (10) Patent No.: US 9,573,980 B2 Thompson et al. (45) Date of Patent: Feb. 21, 2017 (54) FUSION PROTEINS AND METHODS FOR 7.919,678 B2 4/2011 Mironov STIMULATING PLANT GROWTH, 88: R: g: Ei. al. 1 PROTECTING PLANTS FROM PATHOGENS, 3:42: ... g3 is et al. A61K 39.00 AND MMOBILIZING BACILLUS SPORES 2003/0228679 A1 12.2003 Smith et al." ON PLANT ROOTS 2004/OO77090 A1 4/2004 Short 2010/0205690 A1 8/2010 Blä sing et al. (71) Applicant: Spogen Biotech Inc., Columbia, MO 2010/0233.124 Al 9, 2010 Stewart et al. (US) 38E.85. A 38E SEE",teWart et aal. (72) Inventors: Brian Thompson, Columbia, MO (US); 5,3542011/0321197 AllA. '55.12/2011 SE",Schön et al.i. Katie Thompson, Columbia, MO (US) 2012fO259101 A1 10, 2012 Tan et al. 2012fO266327 A1 10, 2012 Sanz Molinero et al. (73) Assignee: Spogen Biotech Inc., Columbia, MO 2014/0259225 A1 9, 2014 Frank et al. US (US) FOREIGN PATENT DOCUMENTS (*) Notice: Subject to any disclaimer, the term of this CA 2146822 A1 10, 1995 patent is extended or adjusted under 35 EP O 792 363 B1 12/2003 U.S.C. 154(b) by 0 days. EP 1590466 B1 9, 2010 EP 2069504 B1 6, 2015 (21) Appl. No.: 14/213,525 WO O2/OO232 A2 1/2002 WO O306684.6 A1 8, 2003 1-1. WO 2005/028654 A1 3/2005 (22) Filed: Mar. 14, 2014 WO 2006/O12366 A2 2/2006 O O WO 2007/078127 A1 7/2007 (65) Prior Publication Data WO 2007/086898 A2 8, 2007 WO 2009037329 A2 3, 2009 US 2014/0274707 A1 Sep.
    [Show full text]
  • Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
    Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341
    [Show full text]
  • A List of the Terrestrial Fungi, Flora and Fauna of Madeira and Selvagens Archipelagos
    Listagem dos fungos, flora e fauna terrestres dos arquipélagos da Madeira e Selvagens A list of the terrestrial fungi, flora and fauna of Madeira and Selvagens archipelagos Coordenadores | Coordinators Paulo A. V. Borges, Cristina Abreu, António M. Franquinho Aguiar, Palmira Carvalho, Roberto Jardim, Ireneia Melo, Paulo Oliveira, Cecília Sérgio, Artur R. M. Serrano e Paulo Vieira Composição da capa e da obra | Front and text graphic design DPI Cromotipo – Oficina de Artes Gráficas, Rua Alexandre Braga, 21B, 1150-002 Lisboa www.dpicromotipo.pt Fotos | Photos A. Franquinho Aguiar; Dinarte Teixeira João Paulo Mendes; Olga Baeta (Jardim Botânico da Madeira) Impressão | Printing Tipografia Peres, Rua das Fontaínhas, Lote 2 Vendas Nova, 2700-391 Amadora. Distribuição | Distribution Secretaria Regional do Ambiente e dos Recursos Naturais do Governo Regional da Madeira, Rua Dr. Pestana Júnior, n.º 6 – 3.º Direito. 9054-558 Funchal – Madeira. ISBN: 978-989-95790-0-2 Depósito Legal: 276512/08 2 INICIATIVA COMUNITÁRIA INTERREG III B 2000-2006 ESPAÇO AÇORES – MADEIRA - CANÁRIAS PROJECTO: COOPERACIÓN Y SINERGIAS PARA EL DESARROLLO DE LA RED NATURA 2000 Y LA PRESERVACIÓN DE LA BIODIVERSIDAD DE LA REGIÓN MACARONÉSICA BIONATURA Instituição coordenadora: Dirección General de Política Ambiental del Gobierno de Canarias Listagem dos fungos, flora e fauna terrestres dos arquipélagos da Madeira e Selvagens A list of the terrestrial fungi, flora and fauna of Madeira and Selvagens archipelagos COORDENADO POR | COORDINATED BY PAULO A. V. BORGES, CRISTINA ABREU,
    [Show full text]
  • PCR-RFLP and Sequencing Analysis of Ribosomal DNA of Bursaphelenchus Nematodes Related to Pine Wilt Disease(L)
    Fundam. appl. Nemalol., 1998,21 (6), 655-666 PCR-RFLP and sequencing analysis of ribosomal DNA of Bursaphelenchus nematodes related to pine wilt disease(l) Hideaki IvVAHORI, Kaku TSUDA, Natsumi KANZAKl, Katsura IZUI and Kazuyoshi FUTAI Cmduate School ofAgriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan. Accepted for publication 23 December 1997. Summary -A polymerase chain reaction - restriction fragment polymorphism (PCR-RFLP) analysis was used for the discri­ mination of isolates of Bursaphelenchus nematode. The isolares of B. xylophilus examined originared from Japan, the United Stares, China, and Canada and the B. mucronatus isolates from Japan, China, and France. Ribosomal DNA containing the 5.8S gene, the internai transcribed spacer region 1 and 2, and partial regions of 18S and 28S gene were amplified by PCR. Digestion of the amplified products of each nematode isolate with twelve restriction endonucleases and examination of resulting RFLP data by cluster analysis revealed a significant gap between B. xylophllus and B. mucronatus. Among the B. xylophilus isolares examined, Japanese pathogenic, Chinese and US isolates were ail identical, whereas Japanese non-pathogenic isolares were slightly distinct and Canadian isolates formed a separate cluster. Among the B. mucronalUS isolates, two Japanese isolares were very similar to each other and another Japanèse and one Chinese isolare were identical to each other. The DNA sequence data revealed 98 differences (nucleotide substitutions or gaps) in 884 bp investigated between B. xylophilus isolare and B. mucronmus isolate; DNA sequence data of Aphelenchus avenae and Aphelenchoides fragariae differed not only from those of Bursaphelenchus nematodes, but also from each other.
    [Show full text]
  • Rathayibacter Rathayi Comb , Nov,, Rathayibacter Tritici Comb , Nov,, Rathayibacter Iranicus Comb, Nov., and Six Strains from Annual Grasses H
    INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Jan. 1993, p. 143-149 Vol. 43, No. 1 0020-7713/93/010143-07$02.00/0 Copyright 0 1993, International Union of Microbiological Societies Rathayibacter gen, nov., Including the Species Rathayibacter rathayi comb , nov,, Rathayibacter tritici comb , nov,, Rathayibacter iranicus comb, nov., and Six Strains from Annual Grasses H. I. ZGURSKAYA, L. I. EVTUSHENKO," V. N. AKIMOV, AND L. V. KALAKOUTSKII All-Russian Collection of Microorganisms, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Moscow Region, 142292, Russia A new genus, Ruthuyibucter, is proposed to accommodate three species of gram-positive, aerobic, coryneform bacteria previously placed in the genus Clavibucter (Ruthuyibucter ruthuyi comb. nov., Ruthuyibucter tritici comb. nov., and Ruthuyibucter irunicus comb. nov.), as well as six strains that were isolated from annual cereal grasses, may be responsible for ryegrass toxicity, and are very similar to the recently described organism Chvibacter toxicus sp. nov. (I. T. Riley and K. M. Ophel, Int. J. Syst. Bacteriol. 42:64-68, 1992). The properties of members of the genus Ruthuyibacter include coryneform morphology, peptidoglycan based on 2,4-diaminobutyric acid (type B2y), predominant menaquinones of the MK-10 type, and phosphatidylglycerol and diphosphatidylglycerol as basic polar lipids. The DNA base compositions range from 63 to 72 mol% G+C. The members of the new genus form a phenetic cluster distinct from Clavibucter spp. at a level
    [Show full text]
  • The Rdna Internal Transcribed Spacer Region As a Taxonomic Marker for Nematodes
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@University of Nebraska University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Plant Pathology Plant Pathology Department 1997 The rDNA Internal Transcribed Spacer Region as a Taxonomic Marker for Nematodes Thomas O. Powers University of Nebraska-Lincoln, [email protected] T. C. Todd Kansas State University A. M. Burnell St. Patrick's College, Maynooth (Pontificial University) P. C. B. Murray St. Patrick's College, Maynooth (Pontificial University) C. C. Flemming Department of Agriculture of Northern Ireland See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/plantpathpapers Part of the Plant Pathology Commons Powers, Thomas O.; Todd, T. C.; Burnell, A. M.; Murray, P. C. B.; Flemming, C. C.; Szalanski, Allen L.; Adams, B. A.; and Harris, T. S., "The rDNA Internal Transcribed Spacer Region as a Taxonomic Marker for Nematodes" (1997). Papers in Plant Pathology. 239. https://digitalcommons.unl.edu/plantpathpapers/239 This Article is brought to you for free and open access by the Plant Pathology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Plant Pathology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Thomas O. Powers, T. C. Todd, A. M. Burnell, P. C. B. Murray, C. C. Flemming, Allen L. Szalanski, B. A. Adams, and T. S. Harris This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/ plantpathpapers/239 Journal of Nematology 29 (4) :441-450.
    [Show full text]