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Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
(Orchidaceae: Pleurothallidinae) from Península De Osa, Puntarenas, Costa Rica
A NEW LEPANTHES (ORCHIDACEAE: PLEUROTHALLIDINAE) FROM PENÍNSULA DE OSA, PUNTARENAS, COSTA RICA ISLER F. CHINCHILLA,1–3 REINALDO AGUILAR,4 AND DIEGO BOGARÍN1,5,6 Abstract. Lepanthes is one of the most species-rich genera of orchids in the Neotropics, with most of the species found in medium to high elevation forests and few species in lowlands. We describe and illustrate Lepanthes osaensis, a new species from the very wet lowland forest of Península de Osa, Costa Rica. It is similar to Lepanthes cuspidata but differs mostly in the vinous leaves; smaller sepals; the narrower, bilobed petals; and the smaller lip with triangular blades. Notes on its distribution, habitat, flowering, and conservation status, as well as discussion of a taxon with similar morphology, are provided. Keywords: Lepanthes cuspidata, orchid endemism, Pleurothallidinae taxonomy, twig epiphytes, very wet lowland forest Lepanthes Sw. is one of the most species-rich genera of Jiménez and Grayum, 2002; Bogarín and Pupulin, 2007; Pleurothallidinae (Orchidaceae), with over 1200 species Rakosy et al., 2013) and the continued long-term fieldwork from southern Mexico and the Antilles to Bolivia and by the second author (RA). A possible explanation is the northern Brazil (Pridgeon, 2005; Luer and Thoerle, 2012; marked seasonality between dry and wet seasons from Vieira-Uribe and Moreno, 2019; Bogarín et al., 2020). the north toward the central Pacific, contrasting with Lepanthes comprises plants with ramicauls enclosed by the prevailing wet conditions in the Caribbean throughout several infundibular sheaths, named “lepanthiform sheaths,” the year (Kohlmann et al., 2002). The most suitable areas racemose inflorescences of successive flowers, subsimilar, for lowland Lepanthes in the Pacific are the tropical wet glabrous sepals, petals wider than long, frequently bilobed forests from Carara in the central Pacific to Península with divergent lobes, the lip usually trilobed with the lateral de Osa and Burica. -
Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
Evolution of Angiosperm Pollen. 7. Nitrogen-Fixing Clade1
Evolution of Angiosperm Pollen. 7. Nitrogen-Fixing Clade1 Authors: Jiang, Wei, He, Hua-Jie, Lu, Lu, Burgess, Kevin S., Wang, Hong, et. al. Source: Annals of the Missouri Botanical Garden, 104(2) : 171-229 Published By: Missouri Botanical Garden Press URL: https://doi.org/10.3417/2019337 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non - commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Annals-of-the-Missouri-Botanical-Garden on 01 Apr 2020 Terms of Use: https://bioone.org/terms-of-use Access provided by Kunming Institute of Botany, CAS Volume 104 Annals Number 2 of the R 2019 Missouri Botanical Garden EVOLUTION OF ANGIOSPERM Wei Jiang,2,3,7 Hua-Jie He,4,7 Lu Lu,2,5 POLLEN. 7. NITROGEN-FIXING Kevin S. Burgess,6 Hong Wang,2* and 2,4 CLADE1 De-Zhu Li * ABSTRACT Nitrogen-fixing symbiosis in root nodules is known in only 10 families, which are distributed among a clade of four orders and delimited as the nitrogen-fixing clade. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes
55 (4) • November 2006: 837–856 Qiu & al. • Basal angiosperm phylogeny Reconstructing the basal angiosperm phylogeny: evaluating information content of mitochondrial genes Yin-Long Qiu1, Libo Li, Tory A. Hendry, Ruiqi Li, David W. Taylor, Michael J. Issa, Alexander J. Ronen, Mona L. Vekaria & Adam M. White 1Department of Ecology & Evolutionary Biology, The University Herbarium, University of Michigan, Ann Arbor, Michigan 48109-1048, U.S.A. [email protected] (author for correspondence). Three mitochondrial (atp1, matR, nad5), four chloroplast (atpB, matK, rbcL, rpoC2), and one nuclear (18S) genes from 162 seed plants, representing all major lineages of gymnosperms and angiosperms, were analyzed together in a supermatrix or in various partitions using likelihood and parsimony methods. The results show that Amborella + Nymphaeales together constitute the first diverging lineage of angiosperms, and that the topology of Amborella alone being sister to all other angiosperms likely represents a local long branch attrac- tion artifact. The monophyly of magnoliids, as well as sister relationships between Magnoliales and Laurales, and between Canellales and Piperales, are all strongly supported. The sister relationship to eudicots of Ceratophyllum is not strongly supported by this study; instead a placement of the genus with Chloranthaceae receives moderate support in the mitochondrial gene analyses. Relationships among magnoliids, monocots, and eudicots remain unresolved. Direct comparisons of analytic results from several data partitions with or without RNA editing sites show that in multigene analyses, RNA editing has no effect on well supported rela- tionships, but minor effect on weakly supported ones. Finally, comparisons of results from separate analyses of mitochondrial and chloroplast genes demonstrate that mitochondrial genes, with overall slower rates of sub- stitution than chloroplast genes, are informative phylogenetic markers, and are particularly suitable for resolv- ing deep relationships. -
Ancistrocladaceae
Soltis et al—American Journal of Botany 98(4):704-730. 2011. – Data Supplement S2 – page 1 Soltis, Douglas E., Stephen A. Smith, Nico Cellinese, Kenneth J. Wurdack, David C. Tank, Samuel F. Brockington, Nancy F. Refulio-Rodriguez, Jay B. Walker, Michael J. Moore, Barbara S. Carlsward, Charles D. Bell, Maribeth Latvis, Sunny Crawley, Chelsea Black, Diaga Diouf, Zhenxiang Xi, Catherine A. Rushworth, Matthew A. Gitzendanner, Kenneth J. Sytsma, Yin-Long Qiu, Khidir W. Hilu, Charles C. Davis, Michael J. Sanderson, Reed S. Beaman, Richard G. Olmstead, Walter S. Judd, Michael J. Donoghue, and Pamela S. Soltis. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98(4): 704-730. Appendix S2. The maximum likelihood majority-rule consensus from the 17-gene analysis shown as a phylogram with mtDNA included for Polyosma. Names of the orders and families follow APG III (2009); other names follow Cantino et al. (2007). Numbers above branches are bootstrap percentages. 67 Acalypha Spathiostemon 100 Ricinus 97 100 Dalechampia Lasiocroton 100 100 Conceveiba Homalanthus 96 Hura Euphorbia 88 Pimelodendron 100 Trigonostemon Euphorbiaceae Codiaeum (incl. Peraceae) 100 Croton Hevea Manihot 10083 Moultonianthus Suregada 98 81 Tetrorchidium Omphalea 100 Endospermum Neoscortechinia 100 98 Pera Clutia Pogonophora 99 Cespedesia Sauvagesia 99 Luxemburgia Ochna Ochnaceae 100 100 53 Quiina Touroulia Medusagyne Caryocar Caryocaraceae 100 Chrysobalanus 100 Atuna Chrysobalananaceae 100 100 Licania Hirtella 100 Euphronia Euphroniaceae 100 Dichapetalum 100 -
Structure and Distribution of Heteromorphic Stomata in Pterygota Alata (Roxb.) R. Br. (Malvaceae, Formerly Sterculiaceae)
Structure and distribution of heteromorphic stomata in Pterygota alata (Roxb.) R. Br. (Malvaceae, formerly Sterculiaceae) Sonia MITRA Taxonomy and Biosystematics Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata – 700 019, W.B. (India) G. G. MAITI Department of Botany, University of Kalyani, Nadia, W.B. (India) Debabrata MAITY Taxonomy and Biosystematics Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata – 700 019, W.B. (India) [email protected] (corresponding author) Published on 26 June 2015 Mitra S., Maiti G.G. & Maity D. 2015. — Structure and distribution of heteromorphic stomata in Pterygota alata (Roxb.) R. Br. (Malvaceae, formerly Sterculiaceae). Adansonia, sér. 3, 37 (1): 139-147. http://dx.doi.org/10.5252/a2015n1a9 ABSTRACT Th irteen types of stomata along with 18 subtypes and 3 intermediate subtypes between brachy- parahexacytic monopolar and dipolar are reported here to be present in the leaves of Pterygota alata (Roxb.) R. Br. var. alata and Pterygota alata (Roxb.) R. Br. var. irregularis (W. W. Sm.) Deb & S. K. Basu. Th e foliar epidermal cells are either polygonal, rectangular, or triangular, having either straight KEY WORDS anticlinal walls or sinuous to undulate walls, and isodiametric in surface view. Th e observed stomata Sterculiaceae, are amphibrachyparacytic, amphicyclocytic, anisocytic, anomocytic, anomotetracytic, brachyparacytic, heteromorphic stomata, brachyparahexacytic, brachyparatetracytic, cyclocytic, paracytic, parahexacytic (dipolar), paratetra- distributional pattern of stomata, cytic and stephanocytic. Besides these, the presence of giant stomata is a signifi cant fi nding. Cuticu- stomatography. lar striations are present on the subsidiary cells, epidermal cells and sometimes even on guard cells. RÉSUMÉ Structure et distribution des stomates hétéromorphes chez Pterygota alata (Roxb.) R. -
Malaria Journal Biomed Central
Malaria Journal BioMed Central Research Open Access Plants traditionally prescribed to treat tazo (malaria) in the eastern region of Madagascar Milijaona Randrianarivelojosia*1, Valérie T Rasidimanana1, Harison Rabarison2, Peter K Cheplogoi3, Michel Ratsimbason4, Dulcie A Mulholland3 and Philippe Mauclère1 Address: 1Groupe de Recherche sur le Paludisme, Institut Pasteur de Madagascar BP 1274, Antananarivo (101) Madagascar, 2Conservation International Madagascar, BP 5178 Antananarivo (101) Madagascar, 3Natural Products Research Group, School of Pure and Applied Chemistry, University of Natal, Durban, South Africa 4041 and 4Centre National d'Application des Recherches Pharmaceutiques BP 702, Antananarivo (101) Madagascar Email: Milijaona Randrianarivelojosia* - [email protected]; Valérie T Rasidimanana - [email protected]; Harison Rabarison - [email protected]; Peter K Cheplogoi - [email protected]; Michel Ratsimbason - [email protected]; Dulcie A Mulholland - [email protected]; Philippe Mauclère - [email protected] * Corresponding author Published: 24 July 2003 Received: 24 June 2003 Accepted: 24 July 2003 Malaria Journal 2003, 2:25 This article is available from: http://www.malariajournal.com/content/2/1/25 © 2003 Randrianarivelojosia et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are per- mitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Abstract Background: Malaria is known as tazo or tazomoka in local terminology in Madagascar. Within the context of traditional practice, malaria (and/or malaria symptoms) is commonly treated by decoctions or infusions from bitter plants. One possible approach to the identification of new antimalarial drug candidates is to search for compounds that cure or prevent malaria in plants empirically used to treat malaria. -
Federal Register / Vol. 61, No. 40 / Wednesday, February 28, 1996 / Proposed Rules
7596 Federal Register / Vol. 61, No. 40 / Wednesday, February 28, 1996 / Proposed Rules DEPARTMENT OF THE INTERIOR appointment in the Regional Offices SUPPLEMENTARY INFORMATION: listed below. Fish and Wildlife Service Information relating to particular taxa Background in this notice may be obtained from the The Endangered Species Act (Act) of 50 CFR Part 17 Service's Endangered Species 1973, as amended, (16 U.S.C. 1531 et Coordinator in the lead Regional Office seq.) requires the Service to identify Endangered and Threatened Wildlife identified for each taxon and listed species of wildlife and plants that are and Plants; Review of Plant and below: endangered or threatened, based on the Animal Taxa That Are Candidates for Region 1. California, Commonwealth best available scientific and commercial Listing as Endangered or Threatened of the Northern Mariana Islands, information. As part of the program to Species Hawaii, Idaho, Nevada, Oregon, Pacific accomplish this, the Service has AGENCY: Fish and Wildlife Service, Territories of the United States, and maintained a list of species regarded as Interior. Washington. candidates for listing. The Service maintains this list for a variety of ACTION: Notice of review. Regional Director (TE), U.S. Fish and Wildlife Service, Eastside Federal reasons, includingÐto provide advance SUMMARY: In this notice the Fish and Complex, 911 N.E. 11th Avenue, knowledge of potential listings that Wildlife Service (Service) presents an Portland, Oregon 97232±4181 (503± could affect decisions of environmental updated list of plant and animal taxa 231±6131). planners and developers; to solicit input native to the United States that are Region 2. -
A Preliminary List of the Vascular Plants and Wildlife at the Village Of
A Floristic Evaluation of the Natural Plant Communities and Grounds Occurring at The Key West Botanical Garden, Stock Island, Monroe County, Florida Steven W. Woodmansee [email protected] January 20, 2006 Submitted by The Institute for Regional Conservation 22601 S.W. 152 Avenue, Miami, Florida 33170 George D. Gann, Executive Director Submitted to CarolAnn Sharkey Key West Botanical Garden 5210 College Road Key West, Florida 33040 and Kate Marks Heritage Preservation 1012 14th Street, NW, Suite 1200 Washington DC 20005 Introduction The Key West Botanical Garden (KWBG) is located at 5210 College Road on Stock Island, Monroe County, Florida. It is a 7.5 acre conservation area, owned by the City of Key West. The KWBG requested that The Institute for Regional Conservation (IRC) conduct a floristic evaluation of its natural areas and grounds and to provide recommendations. Study Design On August 9-10, 2005 an inventory of all vascular plants was conducted at the KWBG. All areas of the KWBG were visited, including the newly acquired property to the south. Special attention was paid toward the remnant natural habitats. A preliminary plant list was established. Plant taxonomy generally follows Wunderlin (1998) and Bailey et al. (1976). Results Five distinct habitats were recorded for the KWBG. Two of which are human altered and are artificial being classified as developed upland and modified wetland. In addition, three natural habitats are found at the KWBG. They are coastal berm (here termed buttonwood hammock), rockland hammock, and tidal swamp habitats. Developed and Modified Habitats Garden and Developed Upland Areas The developed upland portions include the maintained garden areas as well as the cleared parking areas, building edges, and paths. -
Guide to Theecological Systemsof Puerto Rico
United States Department of Agriculture Guide to the Forest Service Ecological Systems International Institute of Tropical Forestry of Puerto Rico General Technical Report IITF-GTR-35 June 2009 Gary L. Miller and Ariel E. Lugo The Forest Service of the U.S. Department of Agriculture is dedicated to the principle of multiple use management of the Nation’s forest resources for sustained yields of wood, water, forage, wildlife, and recreation. Through forestry research, cooperation with the States and private forest owners, and management of the National Forests and national grasslands, it strives—as directed by Congress—to provide increasingly greater service to a growing Nation. The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable sex, marital status, familial status, parental status, religion, sexual orientation genetic information, political beliefs, reprisal, or because all or part of an individual’s income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at (202) 720-2600 (voice and TDD).To file a complaint of discrimination, write USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W. Washington, DC 20250-9410 or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer. Authors Gary L. Miller is a professor, University of North Carolina, Environmental Studies, One University Heights, Asheville, NC 28804-3299.