Jamaican Boa Genetics
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The Unintended Consequences of Transporting Animals: Diseases, Behaviour, and Genetics Genetics of the Jamaican Boa Epicrates [Chilabothrus] subflavus (Stejneger 1901) Susan Koenig, DFES [email protected] Windsor Research Centre Caribbean Biogeography Morphology 466 R.G. Reynolds et al. / Molecular Phylogenetics and Evolution 68 (2013) 461–470 466 466 466R.G. Reynolds466 et al. / MolecularR.G. Phylogenetics Reynolds et and al. / Evolution MolecularR.G. ReynoldsR.G. 68 Phylogenetics Reynolds (2013) et al. 461–470 et / Molecular and al. 461–470 / Molecular Evolution (2013) 68 Phylogenetics 68 Phylogenetics (2013) Evolution and 461–470 and and Evolution Evolution Phylogenetics 68 68 (2013) (2013) Molecular / al. et 461–470 461–470 Reynolds R.G. 466 466 R.G. Reynolds et al. / Molecular Phylogenetics and Evolution 68 (2013) 461–470 466 R.G. Reynolds19.2 et al. / Molecular Phylogenetics and Evolution 68 (2013) 461–470 DNA Analyses 17.3 10-2 21.7 MYA Fig. 3. Fossil-calibrated species tree (left) for the ingroups Boa, Chilabothrus, Corallus, Epicrates and Eunectes. Nodes are labeled with letters (Table 3) and 95% HPD intervals Fig. 3. Fossil-calibrated species tree (left) for the ingroups Boa, Chilabothrus, Corallus, Epicrates and Eunectes. Nodes are labeled with letters (Table 3) and 95% HPD intervals Fig. 3. Fossil-calibrated speciesare tree shown, (left) with for the shading ingroups correspondingBoa, Chilabothrus to the posterior, Corallus, probabilities Epicrates and forEunectes each node. 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( for Each letters the with tip ingroups is labeled labeled are Boa with, . Nodes Chilabothrus a coloredEunectes square, Corallus and corresponding, Epicrates, Epicrates Corallus toand, theEunectes presentChilabothrus . range, NodesBoa of are labeled with ingroups the letters for (left) (Table tree 3) species and 95% HPD intervalsFossil-calibrated 3. Fig. Fig. 3. Fossil-calibrated species tree (left) for the ingroups Boa, Chilabothrus, Corallus, Epicrates and Eunectes. Nodes arelegend, labeled the reader with is letters referredthat (Table to species. the 3 web) A and representative version 95% of HPD this intervals Westarticle.) Indian boa (C. inornatus from Arecibo, Puerto Rico) is shown on the far right. (For interpretation of the references to color in this figure that species. A representative West Indian boaare (C. shown, inornatus withfrom shading the Arecibo, of corresponding median Puerto the Rico) across is to shown the reflected is posterior tree on the species far probabilities The right. 0.95). < (For blue interpretation for light each0.95; nodeP of the(dark references blue P 0.95; to blue color (dark light in node this blue each figure < for 0.95). The species probabilities tree posterior the is to reflected across corresponding themedian shading with of the shown, are are shown, with shading corresponding to the posterior probabilities for each node (dark blue P 0.95; light blue < 0.95). The species tree islegend, reflected the across reader is the referred median to the of the web version of this article.) legend, the reader is referred to the web versionfigure, of this and between article.) onlits the right the results from the biogeographic sp inferred DEC the analysis represent are node shown. each below Colored and above branches branches above Colored and shown. below are each analysis DEC node represent biogeographic the the from inferred results the sp right lits the on between and figure, figure, and on the right the results from the biogeographic DEC analysis are shown. 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A representativeFossil-calibrated to the present West figure species this in Indian range color to tree boaof (left) (C. references inornatus for the of the ingroupsfrom Arecibo, interpretation Boa (For , PuertoChilabothrus right. far the Rico) on is, shown Corallus is shown Rico) , on Epicrates Puerto the far Arecibo, right. andfrom Eunectes (For interpretation. inornatus NodesC. are of ( labeled the boa referenceswith Indian West letters to color (Table in representative A this 3) and figure species. 95%that HPD intervals that species. A representative West Indian boa (C. inornatus from Arecibo, Puerto Rico) is shown on the far right. (For interpretationlegend, of the theare references reader shown, is with referred to shadingcolor to in the corresponding this web figure version of to this the article.)posterior probabilities for each node (dark blue P 0.95; light blue < 0.95). article.) this The of species version web tree the to is reflected referred is reader across the thelegend, median of the legend, the reader is referred to the web version of this article.) figure, and on the right the results from the biogeographic DEC analysis are shown. Colored branches above and below each node represent the inferred splits between lineages (Table 3), which are color-coded by island or island group as shown above the figure. Each tip is labeled with a colored square corresponding to the present range of that species. A representative West Indian boa (C. inornatus from Arecibo, Puerto Rico) is shown on the far right. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.) Fig. 3. Fossil-calibrated species tree (left) for the ingroups Boa, Chilabothrus, Corallus, Epicrates and Eunectes. Nodes are labeled with letters (Table 3) and 95% HPD intervals are shown, with shading corresponding to the posterior probabilities for each node (dark blue P 0.95; light blue < 0.95). The species tree is reflected across the median of the figure, and on the right the results from the biogeographic DEC analysis are shown. Colored branches above and below each node represent the inferred splits between lineages (Table 3), which are color-coded by island or island group as shown above the figure. Each tip is labeled with a colored square corresponding to the present range of that species. A representative West Indian boa (C. inornatus from Arecibo, Puerto Rico) is shown on the far right. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.) Fig. 3. Fossil-calibrated species tree (left) for the ingroups Boa, Chilabothrus, Corallus, Epicrates and Eunectes. Nodes are labeled with letters (Table 3) and 95% HPD intervals are shown, with shading corresponding to the posterior probabilities for each node (dark blue P 0.95; light blue < 0.95). The species tree is reflected across the median of the figure, and on the right the results from the biogeographic DEC analysis are shown. Colored branches above and below each node represent the inferred splits between lineages (Table 3), which are color-coded by island or island group as shown above the figure. Each tip is labeled with a colored square corresponding to the present range of that species. A representative West Indian boa (C. inornatus from Arecibo, Puerto Rico) is shown on the far right. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.) Fig. 4. Bayesian MCMC consensus tree from the concatenated and partitioned 10-gene dataset. Nodes with posterior probabilities >0.95 are indicated by an asterisk (Ã), while numbers indicate posterior probabilities at nodes with lower support. Refer to Supplementary Data S1 for more information on tip labels. Fig. 4. Bayesian MCMC consensus tree from the concatenated and partitioned 10-gene dataset. Nodes with posterior probabilities >0.95 are indicated by an asterisk (Ã), while numbers indicate posterior probabilities at nodes with lower support.