RESEARCH ARTICLE Negative Gravitactic Behavior of Caenorhabditis Japonica Dauer Larvae
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Maternal Care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)̶Correlated Evolution with Title Morphological Change
Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)̶correlated evolution with Title morphological change Author(s) Tsai, Jing-Fu; Kudo, Shin-ichi; Yoshizawa, Kazunori BMC Evolutionary Biology, 15, 258 Citation https://doi.org/10.1186/s12862-015-0537-4 Issue Date 2015-11-19 Doc URL http://hdl.handle.net/2115/63251 Rights(URL) http://creativecommons.org/licenses/by/4.0 Type article File Information 10.1186_s12862-015-0537-4.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Tsai et al. BMC Evolutionary Biology (2015) 15:258 DOI 10.1186/s12862-015-0537-4 RESEARCH ARTICLE Open Access Maternal care in Acanthosomatinae (Insecta: Heteroptera: Acanthosomatidae)— correlated evolution with morphological change Jing-Fu Tsai1,3*, Shin-ichi Kudo2 and Kazunori Yoshizawa1 Abstract Background: Maternal care (egg-nymph guarding behavior) has been recorded in some genera of Acanthosomatidae. However, the origin of the maternal care in the family has remained unclear due to the lack of phylogenetic hypotheses. Another reproductive mode is found in non-caring species whose females smear their eggs before leaving them. They possess pairs of complex organs on the abdominal venter called Pendergrast’s organ (PO) and spread the secretion of this organ onto each egg with their hind legs, which is supposed to provide a protective function against enemies. Some authors claim that the absence of PO may be associated with the presence of maternal care. No study, however, has tested this hypothesis of a correlated evolution between the two traits. Results: We reconstructed the molecular phylogeny of the subfamily Acanthosomatinae using five genetic markers sequenced from 44 species and one subspecies with and without maternal care. -
(Pentatomidae) DISSERTATION Presented
Genome Evolution During Development of Symbiosis in Extracellular Mutualists of Stink Bugs (Pentatomidae) DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Alejandro Otero-Bravo Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2020 Dissertation Committee: Zakee L. Sabree, Advisor Rachelle Adams Norman Johnson Laura Kubatko Copyrighted by Alejandro Otero-Bravo 2020 Abstract Nutritional symbioses between bacteria and insects are prevalent, diverse, and have allowed insects to expand their feeding strategies and niches. It has been well characterized that long-term insect-bacterial mutualisms cause genome reduction resulting in extremely small genomes, some even approaching sizes more similar to organelles than bacteria. While several symbioses have been described, each provides a limited view of a single or few stages of the process of reduction and the minority of these are of extracellular symbionts. This dissertation aims to address the knowledge gap in the genome evolution of extracellular insect symbionts using the stink bug – Pantoea system. Specifically, how do these symbionts genomes evolve and differ from their free- living or intracellular counterparts? In the introduction, we review the literature on extracellular symbionts of stink bugs and explore the characteristics of this system that make it valuable for the study of symbiosis. We find that stink bug symbiont genomes are very valuable for the study of genome evolution due not only to their biphasic lifestyle, but also to the degree of coevolution with their hosts. i In Chapter 1 we investigate one of the traits associated with genome reduction, high mutation rates, for Candidatus ‘Pantoea carbekii’ the symbiont of the economically important pest insect Halyomorpha halys, the brown marmorated stink bug, and evaluate its potential for elucidating host distribution, an analysis which has been successfully used with other intracellular symbionts. -
Field Studies Reveal a Close Relative of C. Elegans Thrives in the Fresh Figs
Woodruf and Phillips BMC Ecol (2018) 18:26 https://doi.org/10.1186/s12898-018-0182-z BMC Ecology RESEARCH ARTICLE Open Access Field studies reveal a close relative of C. elegans thrives in the fresh fgs of Ficus septica and disperses on its Ceratosolen pollinating wasps Gavin C. Woodruf1,2* and Patrick C. Phillips2 Abstract Background: Biotic interactions are ubiquitous and require information from ecology, evolutionary biology, and functional genetics in order to be understood. However, study systems that are amenable to investigations across such disparate felds are rare. Figs and fg wasps are a classic system for ecology and evolutionary biology with poor functional genetics; Caenorhabditis elegans is a classic system for functional genetics with poor ecology. In order to help bridge these disciplines, here we describe the natural history of a close relative of C. elegans, Caenorhabditis inopi- nata, that is associated with the fg Ficus septica and its pollinating Ceratosolen wasps. Results: To understand the natural context of fg-associated Caenorhabditis, fresh F. septica fgs from four Okinawan islands were sampled, dissected, and observed under microscopy. C. inopinata was found in all islands where F. septica fgs were found. C.i nopinata was routinely found in the fg interior and almost never observed on the outside surface. C. inopinata was only found in pollinated fgs, and C. inopinata was more likely to be observed in fgs with more foun- dress pollinating wasps. Actively reproducing C. inopinata dominated early phase fgs, whereas late phase fgs with emerging wasp progeny harbored C. inopinata dauer larvae. Additionally, C. inopinata was observed dismounting from Ceratosolen pollinating wasps that were placed on agar plates. -
Host Orientation Using Volatiles in the Phoretic Nematode Caenorhabditis
© 2014. Published by The Company of Biologists Ltd | The Journal of Experimental Biology (2014) 217, 3197-3199 doi:10.1242/jeb.105353 SHORT COMMUNICATION Host orientation using volatiles in the phoretic nematode Caenorhabditis japonica Etsuko Okumura1,2,* and Toyoshi Yoshiga1,3,‡ ABSTRACT host-biased phoresy with the burrower bug Parastrachia japonensis Host orientation is the most important step in host-searching Scott (Kiontke et al., 2002; Yoshiga et al., 2013). Dauer larvae (DL), nematodes; however, information on direct cues from hosts to evoke a developmentally arrested and phoretic stage of the nematode and this behaviour is limited. Caenorhabditis japonica establishes a a developmental analogue of IJs in EPNs, are predominantly found species-specific phoresy with Parastrachia japonensis. Dauer larvae on P. japonensis adult females throughout the year in fields. Only (DL), the non-feeding and phoretic stage of C. japonica, are the nematode benefits from this phoresy. The nematode uses the host predominantly found on female phoretic hosts, but the mechanisms insect to prolong its own survival (Tanaka et al., 2012) and for underlying the establishment of this phoresy remain unknown. To transport to food resources, such as the nest of the host insect where determine whether C. japonica DL are able to recognize and orient the mother insect stores fruits of Schoepfia jasminodora Siebold & themselves to a host using a volatile cue from the host, we developed Zuccarini for her nymphs, as well as eggs and nymphal carcasses a Y-tube olfactory assay system in which C. japonica DL were (Okumura et al., 2013b; Yoshiga et al., 2013). Thus, the phoresy is significantly attracted to the air from P. -
A White Paper on Nematode Comparative Genomics David Mck
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Journal of Nematology 37(4):408–416. 2005. © The Society of Nematologistsprovided 2005.by UGD Academic Repository A White Paper on Nematode Comparative Genomics David McK. Bird,1 Mark L. Blaxter,2 James P. McCarter,3,4 Makedonka Mitreva,3 Paul W. Sternberg,5 W. Kelley Thomas6 Abstract: In response to the new opportunities for genome sequencing and comparative genomics, the Society of Nematology (SON) formed a committee to develop a white paper in support of the broad scientific needs associated with this phylum and interests of SON members. Although genome sequencing is expensive, the data generated are unique in biological systems in that genomes have the potential to be complete (every base of the genome can be accounted for), accurate (the data are digital and not subject to stochastic variation), and permanent (once obtained, the genome of a species does not need to be experimentally re-sampled). The availability of complete, accurate, and permanent genome sequences from diverse nematode species will underpin future studies into the biology and evolution of this phylum and the ecological associations (particularly parasitic) nematodes have with other organisms. We anticipate that upwards of 100 nematode genomes will be solved to varying levels of completion in the coming decade and suggest biological and practical considerations to guide the selection of the most informative taxa for sequenc- ing. Key words: Caenorhabditis elegans, comparative genomics, genome sequencing, systematics. The “discipline” of genomics arguably began with a on C. elegans, it was clear to the C. -
Invasive Stink Bugs and Related Species (Pentatomoidea) Biology, Higher Systematics, Semiochemistry, and Management
Invasive Stink Bugs and Related Species (Pentatomoidea) Biology, Higher Systematics, Semiochemistry, and Management Edited by J. E. McPherson Front Cover photographs, clockwise from the top left: Adult of Piezodorus guildinii (Westwood), Photograph by Ted C. MacRae; Adult of Murgantia histrionica (Hahn), Photograph by C. Scott Bundy; Adult of Halyomorpha halys (Stål), Photograph by George C. Hamilton; Adult of Bagrada hilaris (Burmeister), Photograph by C. Scott Bundy; Adult of Megacopta cribraria (F.), Photograph by J. E. Eger; Mating pair of Nezara viridula (L.), Photograph by Jesus F. Esquivel. Used with permission. All rights reserved. CRC Press Taylor & Francis Group 6000 Broken Sound Parkway NW, Suite 300 Boca Raton, FL 33487-2742 © 2018 by Taylor & Francis Group, LLC CRC Press is an imprint of Taylor & Francis Group, an Informa business No claim to original U.S. Government works Printed on acid-free paper International Standard Book Number-13: 978-1-4987-1508-9 (Hardback) This book contains information obtained from authentic and highly regarded sources. Reasonable efforts have been made to publish reliable data and information, but the author and publisher cannot assume responsibility for the validity of all materi- als or the consequences of their use. The authors and publishers have attempted to trace the copyright holders of all material reproduced in this publication and apologize to copyright holders if permission to publish in this form has not been obtained. If any copyright material has not been acknowledged please write and let us know so we may rectify in any future reprint. Except as permitted under U.S. Copyright Law, no part of this book may be reprinted, reproduced, transmitted, or utilized in any form by any electronic, mechanical, or other means, now known or hereafter invented, including photocopying, micro- filming, and recording, or in any information storage or retrieval system, without written permission from the publishers. -
Zootaxa,Comparison of the Cryptic Nematode Species Caenorhabditis
Zootaxa 1456: 45–62 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Comparison of the cryptic nematode species Caenorhabditis brenneri sp. n. and C. remanei (Nematoda: Rhabditidae) with the stem species pattern of the Caenorhabditis Elegans group WALTER SUDHAUS1 & KARIN KIONTKE2 1Institut für Biologie/Zoologie, AG Evolutionsbiologie, Freie Universität Berlin, Königin-Luise Straße 1-3, 14195 Berlin, Germany. [email protected] 2Department of Biology, New York University, 100 Washington Square E., New York, NY10003, USA. [email protected] Abstract The new gonochoristic member of the Caenorhabditis Elegans group, C. brenneri sp. n., is described. This species is reproductively isolated at the postmating level from its sibling species, C. remanei. Between these species, only minute morphological differences are found, but there are substantial genetic differences. The stem species pattern of the Ele- gans group is reconstructed. C. brenneri sp. n. deviates from this character pattern only in small diagnostic characters. In mating tests of C. brenneri sp. n. females with C. remanei males, fertilization takes place and juveniles occasionally hatch. In the reverse combination, no offspring were observed. Individuals from widely separated populations of each species can be crossed successfully (e.g. C. brenneri sp. n. populations from Guadeloupe and Sumatra, or C. remanei populations from Japan and Germany). Both species have been isolated only from anthropogenic habitats, rich in decom- posing organic material. C. brenneri sp. n. is distributed circumtropically, C. remanei is only found in northern temperate regions. To date, no overlap of the ranges was found. -
Regulatory Elements Hox Cis Multigenome DNA
Downloaded from genome.cshlp.org on November 8, 2008 - Published by Cold Spring Harbor Laboratory Press View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Caltech Authors Multigenome DNA sequence conservation identifies Hox cis -regulatory elements Steven G. Kuntz, Erich M. Schwarz, John A. DeModena, et al. Genome Res. published online November 3, 2008 Access the most recent version at doi:10.1101/gr.085472.108 P<P Published online November 3, 2008 in advance of the print journal. Email alerting Receive free email alerts when new articles cite this article - sign up in the box at the service top right corner of the article or click here Advance online articles have been peer reviewed and accepted for publication but have not yet appeared in the paper journal (edited, typeset versions may be posted when available prior to final publication). Advance online articles are citable and establish publication priority; they are indexed by PubMed from initial publication. Citations to Advance online articles must include the digital object identifier (DOIs) and date of initial publication. To subscribe to Genome Research go to: http://genome.cshlp.org/subscriptions/ Copyright © 2008, Cold Spring Harbor Laboratory Press Downloaded from genome.cshlp.org on November 8, 2008 - Published by Cold Spring Harbor Laboratory Press Methods Multigenome DNA sequence conservation identifies Hox cis-regulatory elements Steven G. Kuntz,1,2 Erich M. Schwarz,1 John A. DeModena,1,2 Tristan De Buysscher,1 Diane Trout,1 Hiroaki Shizuya,1 Paul W. Sternberg,1,2,3 and Barbara J. -
Downloaded February 13, 2013)
Bacterial associates of seed-parasitic wasps (Hymenoptera: Megastigmus) Paulson et al. Paulson et al. BMC Microbiology 2014, 14:224 http://www.biomedcentral.com/1471-2180/14/224 Paulson et al. BMC Microbiology 2014, 14:224 http://www.biomedcentral.com/1471-2180/14/224 RESEARCH ARTICLE Open Access Bacterial associates of seed-parasitic wasps (Hymenoptera: Megastigmus) Amber R Paulson*, Patrick von Aderkas and Steve J Perlman Abstract Background: The success of herbivorous insects has been shaped largely by their association with microbes. Seed parasitism is an insect feeding strategy involving intimate contact and manipulation of a plant host. Little is known about the microbial associates of seed-parasitic insects. We characterized the bacterial symbionts of Megastigmus (Hymenoptera: Torymidae), a lineage of seed-parasitic chalcid wasps, with the goal of identifying microbes that might play an important role in aiding development within seeds, including supplementing insect nutrition or manipulating host trees. We screened multiple populations of seven species for common facultative inherited symbionts. We also performed culture independent surveys of larvae, pupae, and adults of M. spermotrophus using 454 pyrosequencing. This major pest of Douglas-fir is the best-studied Megastigmus, and was previously shown to manipulate its tree host into redirecting resources towards unfertilized ovules. Douglas-fir ovules and the parasitoid Eurytoma sp. were also surveyed using pyrosequencing to help elucidate possible transmission mechanisms of the microbial associates of M. spermotrophus. Results: Three wasp species harboured Rickettsia; two of these also harboured Wolbachia. Males and females were infected at similar frequencies, suggesting that these bacteria do not distort sex ratios. The M. -
Downloading the Zinc-Finger Motif from the Gag Protein Must Have Assembly Files and Executing the Ipython Notebook Cells Occurred Independently Multiple Times
The evolution of tyrosine-recombinase elements in Nematoda Amir Szitenberg1, Georgios Koutsovoulos2, Mark L Blaxter2 and David H Lunt1 1Evolutionary Biology Group, School of Biological, Biomedical & Environmental Sciences, University of Hull, Hull, HU6 7RX, UK 2Institute of Evolutionary Biology, The University of Edinburgh, EH9 3JT, UK [email protected] Abstract phylogenetically-based classification scheme. Nematode Transposable elements can be categorised into DNA and model species do not represent the diversity of RNA elements based on their mechanism of transposable elements in the phylum. transposition. Tyrosine recombinase elements (YREs) are relatively rare and poorly understood, despite Keywords: Nematoda; DIRS; PAT; transposable sharing characteristics with both DNA and RNA elements; phylogenetic classification; homoplasy; elements. Previously, the Nematoda have been reported to have a substantially different diversity of YREs compared to other animal phyla: the Dirs1-like YRE retrotransposon was encountered in most animal phyla Introduction but not in Nematoda, and a unique Pat1-like YRE retrotransposon has only been recorded from Nematoda. Transposable elements We explored the diversity of YREs in Nematoda by Transposable elements (TE) are mobile genetic elements sampling broadly across the phylum and including 34 capable of propagating within a genome and potentially genomes representing the three classes within transferring horizontally between organisms Nematoda. We developed a method to isolate and (Nakayashiki 2011). They typically constitute significant classify YREs based on both feature organization and proportions of bilaterian genomes, comprising 45% of phylogenetic relationships in an open and reproducible the human genome (Lander et al. 2001), 22% of the workflow. We also ensured that our phylogenetic Drosophila melanogaster genome (Kapitonov and Jurka approach to YRE classification identified truncated and 2003) and 12% of the Caenorhabditis elegans genome degenerate elements, informatively increasing the (Bessereau 2006). -
Hemiptera: Heteroptera: Pentatomoidea)
Zootaxa 2693: 60–62 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Correspondence ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) Pretarsal structures in the family Parastrachiidae (Hemiptera: Heteroptera: Pentatomoidea) JERZY A. LIS Department of Biosystematics, Opole University, Oleska 22, 45-052 Opole, Poland. E-mail: [email protected], http://www.cydnidae.uni.opole.pl Parastrachiidae, for a long time regarded as a subfamily within the Cydnidae (e.g., Schaefer et al. 1988; Schuh and Slater 1995; Gapud 1991), was raised to family level by Sweet and Schaefer (2002), and this position was then accepted by many heteropterists (e.g., Lis and Heyna 2001; Lis and Schaefer 2005; Hironaka et al. 2007; Schaefer and Kikuhara 2007; Lis 2010). Until not long ago, this taxon (despite its taxonomic, subfamilial or familial, level) included only a single genus, namely Parastrachia Scott, with two species, i.e., P. japonensis (Scott), and P. nagaensis Distant. Recently, a study on the spermathecae of the Cydnidae sensu lato and its related families (Pluot-Sigwalt and Lis 2008) showed that the spermatheca of Parastrachia japonensis is very similar to that of Dismegistus sanguineus de Geer. A close relationship of these genera was also confirmed by results of studies based on their DNA sequences (Grazia et al. 2008). The aim of this paper is to describe the pretarsal structures in species of the genera (Parastrachia and Dismegistus) included presently in Parastrachiidae, and compare them to those recently described in the Cydnidae s.l. (Lis and Ziaja 2010). Material and methods The following species were examined using the SEM technique: Parastrachia nagaensis Distant, 1908 [Japan], P. -
Phylogenetic Relationships of Family Groups in Pentatomoidea Based on Morphology and DNA Sequences (Insecta: Heteroptera)
Cladistics Cladistics 24 (2008) 1–45 10.1111/j.1096-0031.2008.00224.x Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera) Jocelia Graziaa,*, Randall T. Schuhb and Ward C. Wheelerb aCNPq Researcher, Department of Zoology, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil; bDivision of Invertebrate Zoology, American Museum of Natural History, New York, NY 10024, USA Accepted 18 March 2008 Abstract Phylogenetic relationships within the Pentatomoidea are investigated through the coding and analysis of character data derived from morphology and DNA sequences. In total, 135 terminal taxa were investigated, representing most of the major family groups; 84 ingroup taxa are coded for 57 characters in a morphological matrix. As many as 3500 bp of DNA data are adduced for each of 52 terminal taxa, including 44 ingroup taxa, comprising the 18S rRNA, 16S rRNA, 28S rRNA, and COI gene regions. Character data are analysed separately and in the form of a total evidence analysis. Major conclusions of the phylogenetic analysis include: the concept of Urostylididae is restricted to that of earlier authors; the Saileriolinae is raised to family rank and treated as the sister group of all Pentatomoidea exclusive of Urostylididae sensu stricto; a broadly conceived Cydnidae, as recognized by Dolling, 1981, is not supported; the placement of Thaumastellidae within the Pentatomoidea is affirmed and the taxon is recognized at family rank rather than as a subfamily