18- Electron Rule. 18 Electron Rule Cont’D Recall That for MAIN GROUP Elements the Octet Rule Is Used to Predict the Formulae of Covalent Compounds
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Iron-Catalysed Transformation of Molecular Dinitrogen Into Silylamine Under Ambient Conditions
ARTICLE Received 6 Sep 2012 | Accepted 6 Nov 2012 | Published 4 Dec 2012 DOI: 10.1038/ncomms2264 Iron-catalysed transformation of molecular dinitrogen into silylamine under ambient conditions Masahiro Yuki1, Hiromasa Tanaka2, Kouitsu Sasaki1, Yoshihiro Miyake1, Kazunari Yoshizawa2 & Yoshiaki Nishibayashi1 Although stoichiometric transformations using transition metal–N2 complexes have been well investigated towards the goal of nitrogen fixation under mild reaction conditions, only a few examples of the catalytic transformations of N2 using transition metal–N2 complexes as catalysts have been reported. In almost all the catalytic systems, the use of Mo is essential to realize the catalytic transformation of N2, where Mo–N2 complexes are considered to work as effective catalysts. Here we show the first successful example of the Fe-catalysed transfor- mation of N2 into N(SiMe3)3 under ambient conditions, in which iron complexes such as iron pentacarbonyl [Fe(CO)5] and ferrocenes have been found to work as effective catalysts. A plausible reaction pathway is proposed, where Fe(II)–N2 complex bearing two Me3Si groups as ancillary ligands has an important role as a key reactive intermediate, with the aid of density-functional-theory calculations. 1 Institute of Engineering Innovation, School of Engineering, University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-8656, Japan. 2 Institute for Materials Chemistry and Engineering, International Research Center for Molecular Systems, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan. Correspondence and requests for materials should be addressed to K.Y. (email: [email protected]) or to Y.N. (email: [email protected]). -
Oxidative Addition & Reductive Elimination
3/1/2021 Oxidative Addition & Reductive Elimination Robert H. Crabtree: Pages 159 – 182 and 235 - 266 1 Oxidative Addition Change in Example Group configuration • Oxidative addition is a key step in many transition-metal catalyzed reactions 10 8 I III • Basic reaction: d d Cu Cu 11 X X Pd0 PdII 10 LnM + LnM Pt0 PtII 10 Y Y d8 d6 PdII PdIV 10 • The new M-X and M-Y bonds are formed using the electron pair of the X-Y PtII PtIV 10 bond and one metal-centered lone pair IrI IrIII 9 RhI RhIII 9 • The metal goes up in oxidation state (+2), X-Y formally gets reduced to X-, Y- d6 d4 ReI ReIII 7 • The ease of addition (or elimination) can be tuned by the electronic and 0 II steric properties of the ancillary ligands Mo Mo 6 • OA favored by strongly e-donating L d4 d2 MoII MoIV 6 • The most common applications involve: a) Late transition metals (platinum metals: Ru, Rh, Pd, Ir, Pt) - not d7 d6 2CoII 2CoIII 9 too sensitive to O2 and H2O; routinely used in organic synthesis b) C-Halogen, H-H or Si-H bonds d4 d3 2CrII 2CrIII 6 • Common for transition metals, rare for main-group metals but: Grignard reagents! 2 1 3/1/2021 Oxidative addition – concerted mechanism Concerted addition - mostly with non-polar X-Y bonds X X X LnM + LnM LnM Y Y Y A Cr(CO)5: • H2, silanes, alkanes, ... coordinatively Cr(PMe3)5: • Arene C-H bonds more reactive than alkane C-H bonds unsaturated, but metal- centered lone pairs not phosphines are better • H-H, C-H strong bond, but M-H and M-C bonds can be very available donors, weaker acceptors full oxidative -
Organometrallic Chemistry
CHE 425: ORGANOMETALLIC CHEMISTRY SOURCE: OPEN ACCESS FROM INTERNET; Striver and Atkins Inorganic Chemistry Lecturer: Prof. O. G. Adeyemi ORGANOMETALLIC CHEMISTRY Definitions: Organometallic compounds are compounds that possess one or more metal-carbon bond. The bond must be “ionic or covalent, localized or delocalized between one or more carbon atoms of an organic group or molecule and a transition, lanthanide, actinide, or main group metal atom.” Organometallic chemistry is often described as a bridge between organic and inorganic chemistry. Organometallic compounds are very important in the chemical industry, as a number of them are used as industrial catalysts and as a route to synthesizing drugs that would not have been possible using purely organic synthetic routes. Coordinative unsaturation is a term used to describe a complex that has one or more open coordination sites where another ligand can be accommodated. Coordinative unsaturation is a very important concept in organotrasition metal chemistry. Hapticity of a ligand is the number of atoms that are directly bonded to the metal centre. Hapticity is denoted with a Greek letter η (eta) and the number of bonds a ligand has with a metal centre is indicated as a superscript, thus η1, η2, η3, ηn for hapticity 1, 2, 3, and n respectively. Bridging ligands are normally preceded by μ, with a subscript to indicate the number of metal centres it bridges, e.g. μ2–CO for a CO that bridges two metal centres. Ambidentate ligands are polydentate ligands that can coordinate to the metal centre through one or more atoms. – – – For example CN can coordinate via C or N; SCN via S or N; NO2 via N or N. -
Oxidative Addition of Polar Reagents
OXIDATIVE ADDITION OF POLAR REAGENTS Organometallic chemistry has vastly expanded the practicing organic chemist’s notion of what makes a good nucleophile or electrophile. Pre-cross-coupling, for example, using unactivated aryl halides as electrophiles was largely a pipe dream (or possible only under certain specific circumstances). Enter the oxidative addition of polarized bonds: all of a sudden, compounds like bromobenzene started looking a lot more attractive as starting materials. Cross-coupling reactionsinvolving sp2- and sp-hybridized C–X bonds beautifully complement the “classical” substitution reactions at sp3electrophilic carbons. Oxidative addition of the C–X bond is the step that kicks off the magic of these methods. In this post, we’ll explore the mechanisms and favorability trends of oxidative additions of polar reagents. The landscape of mechanistic possibilities for polarized bonds is much more rich than in the non-polar case—concerted, ionic, and radical mechanisms have all been observed. Concerted Mechanisms 2 Oxidative additions of aryl and alkenyl Csp –X bonds, where X is a halogen or sulfonate, proceed through concertedmechanisms analogous to oxidative additions of dihydrogen. Reactions of N–H and O–H bonds in amines, alcohols, and water also appear to be concerted. A π complex involving η2-coordination is an intermediate in the mechanism of insertion into aryl halides at least, and probably vinyl halides too. As two open coordination sites are necessary for concerted oxidative addition, loss of a ligand from a saturated metal complex commonly precedes the actual oxidative addition event. Concerted oxidative addition of aryl halides and sulfonates. Trends in the reactivity of alkyl and aryl (pseudo)halides toward oxidative addition are some of the most famous in organometallic chemistry. -
Understanding the Invisible Hands of Sample Preparation for Cryo-EM
FOCUS | REVIEW ARTICLE FOCUS | REVIEWhttps://doi.org/10.1038/s41592-021-01130-6 ARTICLE Understanding the invisible hands of sample preparation for cryo-EM Giulia Weissenberger1,2,3, Rene J. M. Henderikx1,2,3 and Peter J. Peters 2 ✉ Cryo-electron microscopy (cryo-EM) is rapidly becoming an attractive method in the field of structural biology. With the exploding popularity of cryo-EM, sample preparation must evolve to prevent congestion in the workflow. The dire need for improved microscopy samples has led to a diversification of methods. This Review aims to categorize and explain the principles behind various techniques in the preparation of vitrified samples for the electron microscope. Various aspects and challenges in the workflow are discussed, from sample optimization and carriers to deposition and vitrification. Reliable and versatile specimen preparation remains a challenge, and we hope to give guidelines and posit future directions for improvement. ryo-EM is providing macromolecular structures with the optimum biochemical state of the sample. Grid preparation up to atomic resolution at an unprecedented rate. In this describes the steps needed to make a sample suitable for analysis Ctechnique, electron microscopy images of biomolecules in the microscope. These steps involve chemical or plasma treat- embedded in vitreous, glass-like ice are combined to generate ment of the grid, sample deposition and vitrification. The first three-dimensional (3D) reconstructions. The detailed structural breakthroughs came about from a manual blot-and-plunge method models obtained from these reconstructions grant insight into the developed in the 1980s15 that is still being applied to achieve formi- function of macromole cules and their role in biological processes. -
NIH Public Access Author Manuscript J Am Chem Soc
NIH Public Access Author Manuscript J Am Chem Soc. Author manuscript; available in PMC 2013 August 29. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: J Am Chem Soc. 2012 August 29; 134(34): 14232–14237. doi:10.1021/ja306323x. A Mild, Palladium-Catalyzed Method for the Dehydrohalogenation of Alkyl Bromides: Synthetic and Mechanistic Studies Alex C. Bissember†,‡, Anna Levina†, and Gregory C. Fu†,‡ †Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States ‡Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States Abstract We have exploited a typically undesired elementary step in cross-coupling reactions, β-hydride elimination, to accomplish palladium-catalyzed dehydrohalogenations of alkyl bromides to form terminal olefins. We have applied this method, which proceeds in excellent yield at room temperature in the presence of a variety of functional groups, to a formal total synthesis of (R)- mevalonolactone. Our mechanistic studies establish that the rate-determining step can vary with the structure of the alkyl bromide, and, most significantly, that L2PdHBr (L=phosphine), an often- invoked intermediate in palladium-catalyzed processes such as the Heck reaction, is not an intermediate in the active catalytic cycle. INTRODUCTION The elimination of HX to form an olefin is one of the most elementary transformations in organic chemistry (eq 1).1,2 However, harsh conditions, such as the use of a strong Brønsted acid/base or a high temperature (which can lead to poor functional-group compatibility and to olefin isomerization) are often necessary for this seemingly straightforward process. -
Aromaticity in Polyhydride Complexes of Ru, Ir, Os, and Pt† Cite This: DOI: 10.1039/C5cp04330a Elisa Jimenez-Izala and Anastassia N
PCCP View Article Online PAPER View Journal r-Aromaticity in polyhydride complexes of Ru, Ir, Os, and Pt† Cite this: DOI: 10.1039/c5cp04330a Elisa Jimenez-Izala and Anastassia N. Alexandrova*ab Transition-metal hydrides represent a unique class of compounds, which are essential for catalysis, organic i À i À synthesis, and hydrogen storage. In this work we study IrH5(PPh3)2,(RuH5(P Pr3)2) ,(OsH5(PPr3)2) ,and À OsH4(PPhMe2)3 polyhydride complexes, inspired by the recent discovery of the s-aromatic PtZnH5 cluster À anion. The distinctive feature of these molecules is that, like in the PtZnH5 cluster, the metal is five-fold Received 23rd July 2015, coordinated in-plane, and holds additional ligands attheaxialpositions.Thisworkshowsthattheunusual Accepted 17th September 2015 coordination in these compounds indeed can be explained by s-aromaticity in the pentagonal arrangement, DOI: 10.1039/c5cp04330a stabilized by the atomic orbitals on the metal. Based on this newly elucidated bonding principle, we additionally propose a new family of polyhydrides that display a uniquely high coordination. We also report the first www.rsc.org/pccp indications of how aromaticity may impact the reactivity of these molecules. 1 Introduction many catalytic cycles, where they have either been used as catalysts or invoked as key intermediates.15,16 Aromaticity in Aromaticity is a very important concept in the contemporary general is associated with high symmetry, stability, and specific chemistry: the particular electronic structure of aromatic reactivity. Therefore, the stability of transition-metal hydride systems, where electrons are delocalized, explains their large complexes might have an important repercussion in the kinetics energetic stabilization and low reactivity. -
Synthesis and Reactions of Ferrocene
R Carbon Synthesis and Reactions of Ferrocene R Carbon Carbon Contents Objectives 1 Introduction 1 Preparation of ferrocene 2 Acetylation of ferrocene 7 Preparation of [Fe(η-C5H5)(η-C6H6)]PF6 10 Reaction of [Fe(η-C5H5)(η-C6H6)] PF6 with nucleophiles 12 Manuscript prepared by Dr. Almas I. Zayya, Dr. A. Jonathan Singh and Prof. John L. Spencer. School of Chemical and Physical Sciences, Victoria University of Wellington, New Zealand. R Carbon Objectives Introduction The principal aims of these experiments are to The archetypal organometallic compound provide experience in the synthesis, isolation, ferrocene, [Fe(η-C5H5)2], is of historical importance purification and characterisation of organometallic since its discovery and structural characterisation compounds. Purification techniques include in the early 1950s sparked extensive research into distillation, sublimation, chromatography and the chemistry of metal sandwich compounds.1 crystallisation. The main characterisation Two of the chemists who first proposed the correct technique used in these experiments is 1H NMR structure of ferrocene (Figure 1), Geoffrey Wilkinson spectroscopy using the benchtop Spinsolve and Ernst Otto Fischer, were awarded the Nobel spectrometer. Furthermore, students will Prize in Chemistry in 1973 for their pioneering work also develop their synthetic skills using inert on the chemistry of sandwich complexes. atmosphere techniques. Ferrocene is an example of a π-complex in which interactions between the d-orbitals of the Fe2+ metal centre with the π-orbitals of the two planar - cyclopentadienyl ligands (C5H5 ) form the metal-ligand bonds. Thus, all the carbon atoms in the cyclopentadienyl rings are bonded equally to the central Fe2+ ion. Ferrocene exhibits aromatic properties and is thermally very stable. -
Representation of Three-Center−Two-Electron Bonds in Covalent Molecules with Bridging Hydrogen Atoms Gerard Parkin*
Article Cite This: J. Chem. Educ. 2019, 96, 2467−2475 pubs.acs.org/jchemeduc Representation of Three-Center−Two-Electron Bonds in Covalent Molecules with Bridging Hydrogen Atoms Gerard Parkin* Department of Chemistry, Columbia University, New York, New York 10027, United States *S Supporting Information ABSTRACT: Many compounds can be represented well in terms of the two-center−two-electron (2c−2e) bond model. However, it is well-known that this approach has limitations; for example, certain compounds require the use of three- center−two-electron (3c−2e) bonds to provide an adequate description of the bonding. Although a classic example of a compound that features a 3c−2e bond is provided by − fi diborane, B2H6,3c 2e interactions also feature prominently in transition metal chemistry, as exempli ed by bridging hydride compounds, agostic compounds, dihydrogen complexes, and hydrocarbon and silane σ-complexes. In addition to being able to identify the different types of bonds (2c−2e and 3c−2e) present in a molecule, it is essential to be able to utilize these models to evaluate the chemical reasonableness of a molecule by applying the octet and 18-electron rules; however, to do so requires determination of the electron counts of atoms in molecules. Although this is easily achieved for molecules that possess only 2c− 2e bonds, the situation is more complex for those that possess 3c−2e bonds. Therefore, this article describes a convenient approach for representing 3c−2e interactions in a manner that facilitates the electron counting procedure for such compounds. In particular, specific attention is devoted to the use of the half-arrow formalism to represent 3c−2e interactions in compounds with bridging hydrogen atoms. -
Oxidation of Ferrocene Derivatives with Dibenzoyl Peroxide and Meta-Chloroperoxybenzoic Acid
Cleveland State University EngagedScholarship@CSU ETD Archive 2018 Oxidation of Ferrocene Derivatives with Dibenzoyl Peroxide and Meta-Chloroperoxybenzoic Acid Jos M. Halstead Cleveland State University Follow this and additional works at: https://engagedscholarship.csuohio.edu/etdarchive Part of the Chemistry Commons, and the Medicine and Health Sciences Commons How does access to this work benefit ou?y Let us know! Recommended Citation Halstead, Jos M., "Oxidation of Ferrocene Derivatives with Dibenzoyl Peroxide and Meta- Chloroperoxybenzoic Acid" (2018). ETD Archive. 1108. https://engagedscholarship.csuohio.edu/etdarchive/1108 This Dissertation is brought to you for free and open access by EngagedScholarship@CSU. It has been accepted for inclusion in ETD Archive by an authorized administrator of EngagedScholarship@CSU. For more information, please contact [email protected]. OXIDATION OF FERROCENE DERIVATIVES WITH DIBENZOYL PEROXIDE AND META-CHLOROPEROXYBENZOIC ACID JOSHUA M. HALSTEAD Bachelor of Science in Chemistry Cleveland State University May 2011 Master of Science in Chemistry Cleveland State University May 2013 submitted in partial fulfillment of requirements for the degree DOCTOR OF PHILOSOPHY IN CLINICAL AND BIOANALYTICAL CHEMISTRY at the CLEVELAND STATE UNIVERSITY DECEMBER 2018 DEDICATION This work is dedicated to Dr. John Masnovi, who sadly passed away shortly before its completion. I will remember him for his insightful instruction, kind demeanor, and willingness to help anyone learn. He will be missed. We hereby approve this dissertation for Joshua M. Halstead Candidate for the Doctor of Philosophy in Clinical-Bioanalytical Chemistry degree for The Department of Chemistry and the CLEVELAND STATE UNIVERSITY’S College of Graduate Studies by _________________________________________________________________ Dissertation Chairperson, Dr. -
Experiment #4 the Preparation of Ferrocene & Acetylferrocenes1
Experiment #4: The Preparation of Ferrocene & Acetylferrocene MASSACHUSETTS INSTITUTE OF TECHNOLOGY Department of Chemistry 5.311 Introductory Chemical Experimentation EXPERIMENT #4 THE PREPARATION OF FERROCENE & ACETYLFERROCENES1 I. Purpose The principal aims of this experiment are to provide background information about and experience in: S the synthesis and electronic structure of ferrocene (1), ( -C5H5)2Fe [bis(pentahaptocyclopentadienyl) iron]2 S the synthesis of an ionic liquid, as environment for the acetylation of ferrocene S the use of inert atmospheres (including glove box techniques) S recrystallization or sublimation S the use of GC/MS and thin-layer chromatography as analytical tools and column chromatography as a purification technique • the concepts of Green Chemistry such as Atom Economy3 and alternative non-polluting solvents Ferrocene is a historically important molecule. The initial recognition of the structure of 4 C10H10Fe in 1951 spawned a vast area of chemistry, viz., transition metal organometallic chemistry. This field is still developing and has produced a huge number of compounds in which saturated, unsaturated, and aromatic organic fragments are bonded directly to metals. All carbon atoms in the two cyclopentadienyl rings are equally bonded to the central ion by electrons in the rings. The sandwich structure proposed by Wilkinson and Fischer5,6 (Nobel prize in 1973) in early 1 Mircea D. Gheorghiu designed the experiment to include the acetylation of ferrocene in ionic liquid. 2 The word hapto means in Greek to fasten. Pentahapto therefore, is to be taken as “fastened in five places.” The greek letter followed by a superscript indicates how many atoms of the ligand are attached to the metal. -
Ferrocene Functionalized Single-Walled Carbon Nanotube Bundles
1200 J. Phys. Chem. C 2007, 111, 1200-1206 Ferrocene Functionalized Single-Walled Carbon Nanotube Bundles. Hybrid Interdigitated Construction Film for L-Glutamate Detection Xing-Jiu Huang,*,† Hyung-Soon Im,† Do-Hoon Lee,‡ Hak-Sung Kim,‡ and Yang-Kyu Choi*,† Nano-Bio-Electronic Lab, Department of Electrical Engineering and Computer Science and Department of Biological Sciences, Korea AdVanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejeon, South Korea ReceiVed: September 4, 2006; In Final Form: NoVember 9, 2006 A ferrocene functionalized SWCNT noncovalent nanohybrid was investigated by using a ferrocene/SWCNT interdigitated construction film as an electrode for L-glutamate detection. Ferrocene could immobilize on the surface of SWCNT bundles, and the ferrocene/SWCNT hybrid had a high stability not only in water but also in an organic solvent such as ethanol and acetone (no sediment was observed for more than 3 months). The nanohybrid could not only be thoroughly dispersed in ethanol but also adhere tightly onto glass substrates to form an interdigitated construction film. Owing to the existence of more carbon nanotubes, more active electrochemical mediators, and the unique interdigitated structure of the film, the ferrocene/SWCNT electrode exhibited a high catalytic efficiency, high sensitivity, and fast response during the detection of a low concentration of L-glutamate (1 µM). A good linear relationship between current and concentration was obtained from1to7µM. 1. Introduction of AST and ALT in monitoring patients with liver diseases. AST and ALT are also biological catalysts, and the assay of all Carbon nanotubes are an attractive material for applications AST and ALT activity is based on the following enzyme 1,2 in electronic or sensor devices.