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Phylogeography of the Soil-Borne Vector Nematode
Phylogeography of the soil-borne vector nematode Xiphinema index highly suggests Eastern origin and dissemination with domesticated grapevine van Chung Nguyen, Laure Villate, Carlos Gutierrez-Gutierrez, Pablo Castillo, Cyril van Ghelder, Olivier Plantard, Daniel Esmenjaud To cite this version: van Chung Nguyen, Laure Villate, Carlos Gutierrez-Gutierrez, Pablo Castillo, Cyril van Ghelder, et al.. Phylogeography of the soil-borne vector nematode Xiphinema index highly suggests Eastern origin and dissemination with domesticated grapevine. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.1-11. 10.1038/s41598-019-43812-4. hal-02629151 HAL Id: hal-02629151 https://hal.inrae.fr/hal-02629151 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License www.nature.com/scientificreports OPEN Phylogeography of the soil-borne vector nematode Xiphinema index highly suggests Eastern origin and Received: 27 June 2018 Accepted: 27 April 2019 dissemination with domesticated Published: xx xx xxxx grapevine Van Chung Nguyen1,6, Laure Villate2, Carlos Gutierrez-Gutierrez 3, Pablo Castillo 4, Cyril Van Ghelder1, Olivier Plantard5 & Daniel Esmenjaud1 The soil-borne nematode Xiphinema index is closely linked to its main host, the grapevine, and presents a major threat to vineyards worldwide due to its ability to transmit Grapevine fanleaf virus (GFLV). -
Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA
江西农业大学学报 2010,32( 5): 0928 - 0945 http: / /xuebao. jxau. edu. cn Acta AGriculturae Universitatis JianGxiensis E - mail: ndxb7775@ sina. com Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA YE Weimin 1,2 ,ROBBINS R. T. 1 ( 1. Department of Plant PatholoGy,NematoloGy Laboratory,2601 N. YounG Ave. ,University of Arkan- sas,Fayetteville,AR 72704,USA. 2. Present address: Nematode Assay Laboratory,North Carolina Depart- ment of AGriculture and Consumer Services,RaleiGh,NC 27607,USA) Abstract: In a survey,primarily from the rhizosphere of hardwood trees GrowinG on sandy stream banks, for lonGidorids,828 soil samples were collected from 37 Arkansas counties in 1999—2001. One hundred twenty-seven populations of Xiphinema were recovered from 452 of the 828 soil samples ( 54. 6% ),includinG 71 populations of X. americanum sensu lato,33 populations of X. bakeri,23 populations of X. chambersi and one population of X. krugi. The morpholoGical and morphometric characteristics of these Arkansas species are presented. MorpholoGical and morphometric characteristics are also Given for two populations of X. krugi from Hawaii and North Carolina. Key words: Arkansas; morpholoGy; SEM; survey; taxonomy; Xiphinema americanum; X. bakeri; X. chambersi; X. krugi. 中图分类号: Q959. 17; S432. 4 + 5 文献标志码: A 文章编号: 1000 - 2286( 2010) 05 - 0928 - 18 Xiphinema species are miGratory ectoparasites of both herbaceous and woody plants. Direct feedinG dam- aGe may result in root-tip GallinG and stuntinG of top Growth. In addition,some species -
Worms, Nematoda
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of 2001 Worms, Nematoda Scott Lyell Gardner University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Gardner, Scott Lyell, "Worms, Nematoda" (2001). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 78. https://digitalcommons.unl.edu/parasitologyfacpubs/78 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Encyclopedia of Biodiversity, Volume 5 (2001): 843-862. Copyright 2001, Academic Press. Used by permission. Worms, Nematoda Scott L. Gardner University of Nebraska, Lincoln I. What Is a Nematode? Diversity in Morphology pods (see epidermis), and various other inverte- II. The Ubiquitous Nature of Nematodes brates. III. Diversity of Habitats and Distribution stichosome A longitudinal series of cells (sticho- IV. How Do Nematodes Affect the Biosphere? cytes) that form the anterior esophageal glands Tri- V. How Many Species of Nemata? churis. VI. Molecular Diversity in the Nemata VII. Relationships to Other Animal Groups stoma The buccal cavity, just posterior to the oval VIII. Future Knowledge of Nematodes opening or mouth; usually includes the anterior end of the esophagus (pharynx). GLOSSARY pseudocoelom A body cavity not lined with a me- anhydrobiosis A state of dormancy in various in- sodermal epithelium. -
(Nematoda: Longidoridae) with Description of a New Species
Eur J Plant Pathol (2020) 158:59–81 https://doi.org/10.1007/s10658-020-02055-0 An integrative taxonomic study of the needle nematode complex Longidorus goodeyi Hooper, 1961 (Nematoda: Longidoridae) with description of a new species. Ruihang Cai & Tom Prior & Bex Lawson & Carolina Cantalapiedra-Navarrete & Juan E. Palomares-Rius & Pablo Castillo & Antonio Archidona-Yuste Received: 14 April 2020 /Revised: 8 June 2020 /Accepted: 19 June 2020 /Published online: 26 June 2020 # The Author(s) 2020 Abstract Needle nematodes are polyphagous root- and slightly offset by a depression with body contour, ectoparasites parasitizing a wide range of economically amphidial pouch with slightly asymmetrical lobes, important plants not only by directly feeding on root odontostyle 80.5–101.0 µm long, tail short and conoid cells, but also by transmitting nepoviruses. This study rounded. Longidorus panderaltum n. sp. is quite similar deciphers the diversity of the complex Longidorus to L. goodeyi and L. onubensis in major morphometrics goodeyi through integrative diagnosis method, based and morphology. However, differential morphology in on a combination of morphological, morphometrical, the tail shape of first-stage juvenile, phylogeny and multivariate analysis and molecular data. A new haplonet analyses indicate they are three distinct valid Longidorus species, Longidorus panderaltum n. sp. is species. This study defines those three species as mem- described and illustrated from a population associated bers of L. goodeyi complex group and reveals the taxo- with the rhizosphere of asphodel (Asphodelus ramosus nomical complexity of the genus Longidorus.This L.) in southern Spain. Morphologically, L. panderaltum L. goodeyi complex group demonstrated that the biodi- n. -
Morphological and Molecular Characterization of Longidorus Americanum N
Journal of Nematology 37(1):94–104. 2005. ©The Society of Nematologists 2005. Morphological and Molecular Characterization of Longidorus americanum n. sp. (Nematoda: Longidoridae), aNeedle Nematode Parasitizing Pine in Georgia Z. A. H andoo, 1 L. K. C arta, 1 A. M. S kantar, 1 W. Y e , 2 R. T. R obbins, 2 S. A. S ubbotin, 3 S. W. F raedrich, 4 and M. M. C ram4 Abstract: We describe and illustrate anew needle nematode, Longidorus americanum n. sp., associated with patches of severely stunted and chlorotic loblolly pine, ( Pinus taeda L.) seedlings in seedbeds at the Flint River Nursery (Byromville, GA). It is characterized by having females with abody length of 5.4–9.0 mm; lip region slightly swollen, anteriorly flattened, giving the anterior end atruncate appearance; long odontostyle (124–165 µm); vulva at 44%–52% of body length; and tail conoid, bluntly rounded to almost hemispherical. Males are rare but present, and in general shorter than females. The new species is morphologically similar to L. biformis, L. paravineacola, L. saginus, and L. tarjani but differs from these species either by the body, odontostyle and total stylet length, or by head and tail shape. Sequence data from the D2–D3 region of the 28S rDNA distinguishes this new species from other Longidorus species. Phylogenetic relationships of Longidorus americanum n. sp. with other longidorids based on analysis of this DNA fragment are presented. Additional information regarding the distribution of this species within the region is required. Key words: DNA sequencing, Georgia, loblolly pine, Longidorus americanum n. sp., molecular data, morphology, new species, needle nematode, phylogenetics, SEM, taxonomy. -
Morphological and Molecular Characterisation of Paralongidorus Rex Andrássy, 1986 (Nematoda: Longidoridae) from Poland and Ukraine
Eur J Plant Pathol (2015) 141:385–395 DOI 10.1007/s10658-014-0550-2 Morphological and molecular characterisation of Paralongidorus rex Andrássy, 1986 (Nematoda: Longidoridae) from Poland and Ukraine Franciszek Wojciech Kornobis & Solomija Susulovska & Andrij Susulovsky & Sergei A. Subbotin Accepted: 7 October 2014 /Published online: 17 October 2014 # The Author(s) 2014. This article is published with open access at Springerlink.com Abstract Paralongidorus rex was found for the first profiles with five enzymes are given. Additionally, in- time in Poland and Ukraine. This paper describes fe- formation on new host plants and map of distribution for males and juveniles from four populations of this spe- P. re x are provided. The new record of this nematode cies on the basis of morphology and morphometrics and species, previously identified as Paralongidorus sp. provides molecular characterization using 18S, ITS1 (GenBank: AY601582) from Slovakia, is defined based and D2-D3 expansion segments of 28S rRNA gene on comparison of sequences of the D2-D3 expansion sequences. Morphometrically, females from these segments of 28S rRNA gene. Finally, remarks on the populations differed slighty in V ratio (means in four potential importance of this species in grapevine pro- populations: 41.9; 42.7; 46.1; 46.8) and odontostylet duction are given. length (166.6; 170.6; 191.5; 193.2). Phylogenetic anal- ysis showed that P. re x had a sister relationship with Keywords Paralongidorus rex . Morphometrics . P. iranicus. PCR-D2-D3 of 28S-RFLP diagnostic D2-D3 of 28S rRNA gene . ITS1 rRNA gene . 18S rRNA gene . RFLP F. W. Kornobis (*) Department of Zoology, Institute of Plant Protection- National Research Institute, Władysława Węgorka 20, 60-318 Poznań, Nematodes of the family Longidoridae are obligatory Poland plant parasites and are considered as economically e-mail: [email protected] important pests. -
Description and Molecular Characterisation of Paralongidorus Litoralis Sp.N.Andp
Nematology, 2008, Vol. 10(1), 87-101 Description and molecular characterisation of Paralongidorus litoralis sp.n.andP. paramaximus Heyns, 1965 (Nematoda: Longidoridae) from Spain Juan E. PALOMARES-RIUS 1,SergeiA.SUBBOTIN 2,3,BlancaB.LANDA 1, ∗ Nicola VOVLAS 4 and Pablo CASTILLO 1, 1 Institute of Sustainable Agriculture, Spanish National Research Council (CSIC), Alameda del Obispo s/n, Apdo. 4084, 14080 Córdoba, Spain 2 Plant Pest Diagnostics Center, California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA 95832-1448, USA 3 Center of Parasitology of A.N. Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences, Leninskii Prospect 33, Moscow, 117071, Russia 4 Istituto per la Protezione delle Piante, Sezione di Bari, Consiglio Nazionale delle Ricerche, (CNR), Via G. Amendola 165/A, 70126 Bari, Italy Received: 17 July 2007; revised: 23 August 2007 Accepted for publication: 23 August 2007 Summary – Paralongidorus litoralis sp. n., a new bisexual species of the genus, is described and illustrated by light microscopy, scanning electron microscopy and molecular studies from specimens collected in a coastal sand dune soil around roots of lentisc (Pistacia lentiscus L.) from Zahara de los Atunes (Cadiz), southern Spain. Paralongidorus litoralis sp. n. is characterised by the large body size (7.5-10.0 mm), a rounded lip region, clearly offset from the body by a collar-like constriction, and bearing a very large stirrup-shaped, amphidial fovea, with conspicuous slit-like aperture, a very long and flexible odontostyle ca 190 µm long, guiding ring located at 35 µm from anterior end, and males with spicules ca 70 µm long. -
STUDIES on XIPHINEMA AMERICANUM SENSU LATD with DESCRIPTIONS of FIFTEEN NEW SPECIES (NEMATODA, LONGIDORIDAE) by Lima
~emat~mfli't (1979), 7 51-106. Laboratorio di Nematologia Agraria del C.N.R. - 70126 Bari, Italy STUDIES ON XIPHINEMA AMERICANUM SENSU LATD WITH DESCRIPTIONS OF FIFTEEN NEW SPECIES (NEMATODA, LONGIDORIDAE) By FRANCO LAMBERTI AND TERESA BLEVE-ZACHEO Lima (1965) was the first to hypothesize that Xiphinema ameri canum Cobb, 1913 was a complex of different species in which he listed X. americanum, X. brevicolle Lordello et Da Costa, 1961, X. opisthohysterum Siddiqi, 1961 and four undescribed species (Lima, 1968). One of them was later described as X. mediterraneum Martelli et Lamberti, 1967 (Lamberti and Martelli, 1971) and recently synon ymized with X. pachtaicum (Tulaganov, 1938) Kirijanova, 1951 (Sid diqi and Lamberti, 1977). The morphometrical variability in X. ame ricanum was also studied by Tarjan (1968) who, after having examined 75 world-wide collected populations, concluded that the species status of X. brevicolle, X. opisthohysterum and Lima's Mediterranean species, presently X. pachtaicum, was justified but that all the other variations he had observed should be considered as geographical variants, cor related with climatic influences, within the X. americanum complex (Tarjan, 1969). In 1974 Heyns stated that «demarcation of species within the group is problematical and unsatisfactory although several of the species proposed by Lima seem to be justified ». Because of the importance of X. americanum as a vector of some plant viruses (Taylor and Robertson, 1975) we thought it useful to carry out studies which would clarify the identity of several popu lations from different geographical locations and establish the re lationships with this and the other related species. -
Transcriptome Profiling of the Root-Knot Nematode Meloidogyne Enterolobii During Parasitism and Identification of Novel Effector Proteins
Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Rapporteur Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinateur Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis Directeur de thèse Doctoral School of Life and Health Sciences Research Unity: UMR ISA INRA 1355-UNS-CNRS 7254 PhD thesis Presented and defensed to obtain Doctor degree in Molecular and Cellular Biology from COTE D’AZUR UNIVERITY by NGUYEN Chinh Nghia Comprehensive Transcriptome Profiling of Root-knot Nematodes during Plant Infection and Characterisation of Species Specific Trait PhD directed by Dr Bruno FAVERY Defense on December 8th 2016 Jury composition : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis President Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Reporter Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Reporter Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinator Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis PhD Director Résumé Les nématodes à galles du genre Meloidogyne spp. -
Detection of Multiple Variants of Grapevine
Detection of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes Shahinez Garcia, Jean-Michel Hily, Veronique Komar, Claude Gertz, Gerard Demangeat, Olivier Lemaire, Emmanuelle Vigne To cite this version: Shahinez Garcia, Jean-Michel Hily, Veronique Komar, Claude Gertz, Gerard Demangeat, et al.. Detec- tion of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes. Viruses, MDPI, 2019, 11 (12), pp.1139. 10.3390/v11121139. hal-03017540 HAL Id: hal-03017540 https://hal.archives-ouvertes.fr/hal-03017540 Submitted on 20 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. viruses Article Detection of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes 1, 1,2, 1 1 Shahinez Garcia y, Jean-Michel Hily y ,Véronique Komar , Claude Gertz , Gérard Demangeat 1, Olivier Lemaire 1 and Emmanuelle Vigne 1,* 1 Unité Mixte de Recherche (UMR) Santé de la Vigne et Qualité du Vin, Institut National de la Recherche Agronomique (INRA)-Université de Strasbourg, BP 20507, 68021 Colmar Cedex, France; [email protected] (S.G.); [email protected] (J.-M.H.); [email protected] (V.K.); [email protected] (C.G.); [email protected] (G.D.); [email protected] (O.L.) 2 Institut Français de la Vigne et du Vin (IFV), 30240 Le Grau-Du-Roi, France * Correspondence: [email protected]; Tel.: +33-389-224-955 These authors contributed equally to the work. -
Nematode-Article.Pdf
Nicol, Stirling, Rose, May and Van Heeswijck Nematodes in viticulture 109 Impact of nematodes on grapevine growth and productivity: current knowledge and future directions, with special reference to Australian viticulture J.M. NICOL1,2, G.R. STIRLING3, B.J. ROSE4,P.MAY1 and R. VAN HEESWIJCK1,5 1 Department of Horticulture,Viticulture and Oenology, University of Adelaide, Glen Osmond, SA 5064, Australia 2 Present address: CIMMYT International, 06600 Mexico, D.F. Mexico 3 Biological Crop Protection, Moggill, Qld 4070,Australia 4 Performance Viticulture, St Andrews, Vic. 3761,Australia 5 Corresponding author: Dr Robyn van Heeswijck , facsimile +61 8 83037116, e-mail [email protected] Abstract Grapevines, like most other crops and especially horticultural crops, suffer from attacks by plant- pathogenic nematodes. The types of nematodes found in vineyards and their distribution in Australia and other regions of the world are described, together with an assessment of their impact on vineyard productivity. Relationships between nematode population density and potential damage to grapevines is tabulated, based on published data. Information on reducing nematode impact by means of rootstocks is summarised and also tabulated. Control by other means is discussed, including soil fumigants and nematicides, biological control agents and plants with nematicidal properties. Special attention is paid to improving nematode resistance in rootstocks or even own-rooted Vitis vinifera cultivars by conventional breeding and by genetic engineering. Areas for future research are identified, and we provide conceptual tools plus information for long term control of nematodes in vineyards. Keywords: nematodes, grapevine, Australian viticulture, rootstocks, resistance, plant breeding 1 Introduction reproduction, which can be both heterosexual and Grape production in Australia, in contrast to most other parthenogenetic. -
Paralongidorus Iberis Sp.N. and P. Monegrensis Sp.N. from Spain With
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Horizon / Pleins textes Fundam. appl. Nemawl., 1997,20 (2),135-148 Paralongidorus iberis sp.n. and P. monegrensis sp.n. from Spain with a polytomous key to the species of the genus Paralongidorus Siddiqi, Hooper & Khan, 1963 (Nematoda : Longidoridae) Miguel ESCUER and Maria ARJAS Departamenlo de Agroecologfa, CCNIA, CSfC, Serrano 115 dpdo, 28006 Madrid, Spain. Accepted for publication 22 March 1996. Summary - Species of the genus Paralongidorns were found for the first time in Spain near Serreta Negra (Huesca), in the North-West of the country. Two new species, P. ibem sp.n. and P. monegrensis sp. n., are described. P. iberis sp. n. is characterized by its medium size (4.4-4.9 mm), rounded set off lip region, stirrup-shaped amphidial pouch and conical dorsally convex tail with conical terminus. It is close to P. Lemoni from which it differs in tail shape, presence of males, body length, position of guiding ring, and a and c ratios. P. mollegrensis sp. n. is characterized by its large body size (7.5-12 mm), hemispherical expanded lip region, sti.rrup-shaped amphidial pouch, and conical dorsally convex tail with rounded terminus. It resembles P. sandelllls and P. xiphine moides. It differs from P. sandelllls by its longer body and odontosryle and anterior position ofguiding ring, and from P. xiphinernoides by presence of males, odontosryle length, position of guiding ring, and c' ratio. A polytomous key of the 70 species described in the genus is proposed and IWO new combinations are proposed, P.