A Morphological and Phylogenetic Revision of the Nectria Cinnabarina Species Complex
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
The Case of Centaurea Stoebe (Spotted Knapweed)
Endophytic fungi as a biodiversity hotspot: the case of Centaurea stoebe (spotted knapweed) Alexey Shipunov Department of Forest Resources University of Idaho Spotted knapweed Spotted knapweed (Centaurea stoebe L., also known as C. maculosa, C. micrantha, C. biebersteinii) is a noxious, invasive plant which was introduced into North America from Eurasia in 1890s. Plant fungal endophytes • Grow inside plant, but do not cause any symptoms • Cryptic symbionts, inhabiting all plants • Play lots of different roles, include host tolerance to stressful conditions, plant defense, plant growth, and plant community biodiversity • One example of the economic importance of endophytes is taxol, well-known anticancer drug, which is not a product of Taxus brevifolia (yew) tree, but of its endophyte Taxomyces andreana Anamorphs and teleomorphs More than 1/3 of fungi do not normally express any sexual characters. They are anamorphs. Sometimes, some anamorphic fungi develop into sexual teleomorphs which have “more morphology” and can be properly classified. Before molecular era, all anamorphic fungi have been treated as Alternaria (anamorph, above), “Deuteromycota”. and Lewia (teleomorph, below) Most of knapweed endophytes are are the same organism. anamorphic ascomycetes. BLAST search usually reveals mixed lists of ana- and teleomorph names Pleomorphic fungi (with variable anamorph/teleomorph relationships) are one of the most painful problem for fungal taxonomy. The weakness of morphology From Jeewon et al. (2003), and Hu et al. (2007) Pestalotiopsis example: morphology chosen as the only identification tool leads to highly tangled molecular tree. “Identify, then sequence” does not work for novel isolates. Thus, the identification of fungi depends on either high level of expertise, or on proper barcoding. -
Illuminating Type Collections of Nectriaceous Fungi in Saccardo's
Persoonia 45, 2020: 221–249 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2020.45.09 Illuminating type collections of nectriaceous fungi in Saccardo’s fungarium N. Forin1, A. Vizzini 2,3,*, S. Nigris1,4, E. Ercole2, S. Voyron2,3, M. Girlanda2,3, B. Baldan1,4,* Key words Abstract Specimens of Nectria spp. and Nectriella rufofusca were obtained from the fungarium of Pier Andrea Saccardo, and investigated via a morphological and molecular approach based on MiSeq technology. ITS1 and ancient DNA ITS2 sequences were successfully obtained from 24 specimens identified as ‘Nectria’ sensu Saccardo (including Ascomycota 20 types) and from the type specimen of Nectriella rufofusca. For Nectria ambigua, N. radians and N. tjibodensis Hypocreales only the ITS1 sequence was recovered. On the basis of morphological and molecular analyses new nomenclatural Illumina combinations for Nectria albofimbriata, N. ambigua, N. ambigua var. pallens, N. granuligera, N. peziza subsp. ribosomal sequences reyesiana, N. radians, N. squamuligera, N. tjibodensis and new synonymies for N. congesta, N. flageoletiana, Sordariomycetes N. phyllostachydis, N. sordescens and N. tjibodensis var. crebrior are proposed. Furthermore, the current classifi- cation is confirmed for Nectria coronata, N. cyanostoma, N. dolichospora, N. illudens, N. leucotricha, N. mantuana, N. raripila and Nectriella rufofusca. This is the first time that these more than 100-yr-old specimens are subjected to molecular analysis, thereby providing important new DNA sequence data authentic for these names. Article info Received: 25 June 2020; Accepted: 21 September 2020; Published: 23 November 2020. INTRODUCTION to orange or brown perithecia which do not change colour in 3 % potassium hydroxide (KOH) or 100 % lactic acid (LA) Nectria, typified with N. -
A Five-Gene Phylogeny of Pezizomycotina
Mycologia, 98(6), 2006, pp. 1018–1028. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 A five-gene phylogeny of Pezizomycotina Joseph W. Spatafora1 Burkhard Bu¨del Gi-Ho Sung Alexandra Rauhut Desiree Johnson Department of Biology, University of Kaiserslautern, Cedar Hesse Kaiserslautern, Germany Benjamin O’Rourke David Hewitt Maryna Serdani Harvard University Herbaria, Harvard University, Robert Spotts Cambridge, Massachusetts 02138 Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 Wendy A. Untereiner Department of Botany, Brandon University, Brandon, Franc¸ois Lutzoni Manitoba, Canada Vale´rie Hofstetter Jolanta Miadlikowska Mariette S. Cole Vale´rie Reeb 2017 Thure Avenue, St Paul, Minnesota 55116 Ce´cile Gueidan Christoph Scheidegger Emily Fraker Swiss Federal Institute for Forest, Snow and Landscape Department of Biology, Duke University, Box 90338, Research, WSL Zu¨ rcherstr. 111CH-8903 Birmensdorf, Durham, North Carolina 27708 Switzerland Thorsten Lumbsch Matthias Schultz Robert Lu¨cking Biozentrum Klein Flottbek und Botanischer Garten der Imke Schmitt Universita¨t Hamburg, Systematik der Pflanzen Ohnhorststr. 18, D-22609 Hamburg, Germany Kentaro Hosaka Department of Botany, Field Museum of Natural Harrie Sipman History, Chicago, Illinois 60605 Botanischer Garten und Botanisches Museum Berlin- Dahlem, Freie Universita¨t Berlin, Ko¨nigin-Luise-Straße Andre´ Aptroot 6-8, D-14195 Berlin, Germany ABL Herbarium, G.V.D. Veenstraat 107, NL-3762 XK Soest, The Netherlands Conrad L. Schoch Department of Botany and Plant Pathology, Oregon Claude Roux State University, Corvallis, Oregon 97331 Chemin des Vignes vieilles, FR - 84120 MIRABEAU, France Andrew N. Miller Abstract: Pezizomycotina is the largest subphylum of Illinois Natural History Survey, Center for Biodiversity, Ascomycota and includes the vast majority of filamen- Champaign, Illinois 61820 tous, ascoma-producing species. -
Ascospore Diversity of Bryophilous Hypocreales and Two New Hepaticolous Nectria Species
Mycologia ISSN: 0027-5514 (Print) 1557-2536 (Online) Journal homepage: http://www.tandfonline.com/loi/umyc20 Ascospore diversity of bryophilous Hypocreales and two new hepaticolous Nectria species Peter Döbbeler To cite this article: Peter Döbbeler (2005) Ascospore diversity of bryophilous Hypocreales and two new hepaticolous Nectria species, Mycologia, 97:4, 924-934 To link to this article: http://dx.doi.org/10.1080/15572536.2006.11832784 Published online: 27 Jan 2017. Submit your article to this journal View related articles Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=umyc20 Download by: [University of Newcastle, Australia] Date: 28 March 2017, At: 09:31 Mycologia, 97(4), 2005, pp. 924±934. q 2005 by The Mycological Society of America, Lawrence, KS 66044-8897 Ascospore diversity of bryophilous Hypocreales and two new hepaticolous Nectria species Peter DoÈbbeler1 tinct microniches on their hosts, such as ventral leaf Ludwig-Maximilians-UniversitaÈt MuÈnchen, FakultaÈt borders or perianths in Jungermanniales or adaxial fuÈr Biologie, Systematische Botanik und Mykologie, surfaces of leaves in Polytrichales. Several species reg- Menzinger Straûe 67, D-80638 MuÈnchen, Germany ularly develop ascomata on the ventral side of foliose hepatics and perforate host leaves. Ascomata are glo- bose or pyriform, setose or nonsetose, nonstromatic Abstract: Hypocreales represents one of the most perithecia of varying size, and color varies from successful orders of ascomycetes on mosses and he- orange-red to hyaline. Excipulum structures repre- patics, and more than 30 obligately bryophilous spe- sent a variety of tissue types. Hyphae offer additional cies belonging to seven genera of Bionectriaceae and important diagnostic features. -
Diseases of Trees in the Great Plains
United States Department of Agriculture Diseases of Trees in the Great Plains Forest Rocky Mountain General Technical Service Research Station Report RMRS-GTR-335 November 2016 Bergdahl, Aaron D.; Hill, Alison, tech. coords. 2016. Diseases of trees in the Great Plains. Gen. Tech. Rep. RMRS-GTR-335. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 229 p. Abstract Hosts, distribution, symptoms and signs, disease cycle, and management strategies are described for 84 hardwood and 32 conifer diseases in 56 chapters. Color illustrations are provided to aid in accurate diagnosis. A glossary of technical terms and indexes to hosts and pathogens also are included. Keywords: Tree diseases, forest pathology, Great Plains, forest and tree health, windbreaks. Cover photos by: James A. Walla (top left), Laurie J. Stepanek (top right), David Leatherman (middle left), Aaron D. Bergdahl (middle right), James T. Blodgett (bottom left) and Laurie J. Stepanek (bottom right). To learn more about RMRS publications or search our online titles: www.fs.fed.us/rm/publications www.treesearch.fs.fed.us/ Background This technical report provides a guide to assist arborists, landowners, woody plant pest management specialists, foresters, and plant pathologists in the diagnosis and control of tree diseases encountered in the Great Plains. It contains 56 chapters on tree diseases prepared by 27 authors, and emphasizes disease situations as observed in the 10 states of the Great Plains: Colorado, Kansas, Montana, Nebraska, New Mexico, North Dakota, Oklahoma, South Dakota, Texas, and Wyoming. The need for an updated tree disease guide for the Great Plains has been recog- nized for some time and an account of the history of this publication is provided here. -
The History of Elm Breeding L
Invest Agrar: Sist Recur For (2004) 13 (1), 161-177 The history of elm breeding L. Mittempergher and A. Santini* Istituto per la Protezione delle Piante. Consiglio Nazionale delle Ricerche. Piazzale delle Cascine, 28. 50144 Firenze. Italy Abstract Breeding elms resistant to Dutch elm disease (DED) started in the Netherlands in the year 1928 on the initiative of a group of women scientists. They were active until 1954, when Hans Heybroek took over at the Dorschkamp Rese- arch Institute and carried on until his retirement in 1992. Two more programmes were initiated in Europe, in Italy and Spain, in 1978 and 1993 respectively, under the impulse of Dutch breeding activities. Elm breeding in America began in 1937 in the USDA-Agricultural Research Service Laboratories and is still being pursued under the leadership of Alden Townsend. Another programme was set up at the University of Wisconsin in 1958, led by Eugene Smalley and was closed after his retirement and death in 2002. A third programme found birth at the Morton Arboretum, Chicago, in 1972 where activities are still carried out by George Ware since his retirement. The number of resistant elm clones released on the market and the scientific progress fostered by breeding activities indicate that the long work needed to carry them on is a positive one. Among the key points considered are: elm germplasm collection, elm species cros- sability, inoculation system and disease evaluation, building up of resistance, and the possible consequences from in- troducing foreign species and hybrids to native elms. Because of shortage of funding long-term research and the per- ception that biotechnology will provide rapid solutions to long-term problems, traditional elm breeding activities seem now to be in difficulty. -
Molecular Phylogeny, Detection and Epidemiology of Nectria Galligena Bres
Molecular Phylogeny, Detection and Epidemiology of Nectria galligena Bres. the incitant of Nectria Canker on Apple By Stephen Richard Henry Langrell April, 2000 Department of Biological Sciences Wye College, University of London Wye, Ashford, Kent. TN25 5AH A thesis submitted in partial fulfillment of the requirements governing the award of the degree of Doctor of Philosophy of the University of London (2) Abstract Nectria canker, incited by Nectria galligena (anamorph Cylindrocarpon heteronema), is prevalent in apple and pear orchards in all temperate growing areas of the world where it causes loss of yield by direct damage to trees, and rotting in stored fruit. Interpretation of the conventional epidemiology, from which current control measures are designed, is often inconsistent with the distribution of infections, particularly in young orchards, and may account for poor control in some areas, suggesting many original assumptions concerning pathogen biology and spread require revision. Earlier work has implicated nurseries as a source of infection. This thesis describes experiments designed to test this hypothesis and the development and application of molecular tools to examine intra- specific variation in N. galligena and its detection in woody tissue. Two experimental trials based on randomised block designs were undertaken. In the first, trees comprising cv. Queen Cox on M9 rootstocks from five UK and five continental commercial nurseries were planted at a single site in East Kent. The incidence of Nectria canker over the ensuing five years was monitored. Significant differences in percentage of trees with canker between nurseries were observed, indicating a source effect. Analysis of data from a second experiment, comprising M9 rootstocks from three nurseries, budded with cv. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Figure 84.-A Target-Shaped Nectria Canker on a Sugar Maple Stem
Figure 84.-A target-shaped Nectria canker on a sugar Figure 85.-Numerous pink-orange young fruNng bodies of maple stem. the coral spot fungus developing on dead bark of Norway maple. Coral spot canker. Coral spot canker (Nectria cinnabarina) is common on sugar maple and other hardwood trees. It usu- fruiting bodies also appear among the black forms produced ally attacks only dead Wigs and branches but also can kill earlier. The red structures are the sexual stage of the branches and stems of young trees weakened by freezing. fungus. Both Sages often are found on the same twig. drought, or mechanical injury. It is common and highly Spores of both can infect fresh wounds. visible. Coral spot canker is considered an "annual" dii.The The fungus infects dead buds and small branch wounds host tree usually regains enough vigor during the growing caused by hail, frost, or insect feeding. It is especially impor- season to block the later invasion of new tissue. Maintaining tant on trees stressed by drought or other environmental fac- gwd stand vigor should suffice as an effective control in tors. The degree of stress to the host determines how rapidly forest stands. the fungus develops. It kills the young bark, which soon darkens and produces a flattened or depressed canker on Steganosponurn ovafum is another common fungus of dying the branch around the infection. The fungus develops mostly and dead maple branches (Fig. 86). It produces black hriing when the tree is dormant and produces its distinctive fruiting structures on branches of trees stressed previously, bodies in late spring or early summer. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and Related Genera with Cylindrocarpon-Like Anamorphs
available online at www.studiesinmycology.org StudieS in Mycology 68: 57–78. 2011. doi:10.3114/sim.2011.68.03 Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs P. Chaverri1*, C. Salgado1, Y. Hirooka1, 2, A.Y. Rossman2 and G.J. Samuels2 1University of Maryland, Department of Plant Sciences and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, USA; 2United States Department of Agriculture, Agriculture Research Service, Systematic Mycology and Microbiology Laboratory, Rm. 240, B-010A, 10300 Beltsville Avenue, Beltsville, Maryland 20705, USA *Correspondence: Priscila Chaverri, [email protected] Abstract: Neonectria is a cosmopolitan genus and it is, in part, defined by its link to the anamorph genusCylindrocarpon . Neonectria has been divided into informal groups on the basis of combined morphology of anamorph and teleomorph. Previously, Cylindrocarpon was divided into four groups defined by presence or absence of microconidia and chlamydospores. Molecular phylogenetic analyses have indicated that Neonectria sensu stricto and Cylindrocarpon sensu stricto are phylogenetically congeneric. In addition, morphological and molecular data accumulated over several years have indicated that Neonectria sensu lato and Cylindrocarpon sensu lato do not form a monophyletic group and that the respective informal groups may represent distinct genera. In the present work, a multilocus analysis (act, ITS, LSU, rpb1, tef1, tub) was applied to representatives of the informal groups to determine their level of phylogenetic support as a first step towards taxonomic revision of Neonectria sensu lato. Results show five distinct highly supported clades that correspond to some extent with the informal Neonectria and Cylindrocarpon groups that are here recognised as genera: (1) N.