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Agarose Gel Electrophoresis
Laboratory for Environmental Pathogen Research Department of Environmental Sciences University of Toledo Agarose gel electrophoresis Background information Agarose gel electrophoresis of DNA is used to determine the presence and distinguish the type of nucleic acids obtained after extraction and to analyze restriction digestion products. Desired DNA fragments can be physically isolated for various purposes such as sequencing, probe preparation, or for cloning fragments into other vectors. Both agarose and polyacrylamide gels are used for DNA analysis. Agarose gels are usually run to size larger fragments (greater than 200 bp) and polyacrylamide gels are run to size fragments less than 200 bp. Typically agarose gels are used for most purposes and polyacrylamide gels are used when small fragments, such as digests of 16S rRNA genes, are being distinguished. There are also specialty agaroses made by FMC (e.g., Metaphor) for separating small fragments. Regular agarose gels may range in concentration from 0.6 to 3.0%. Pouring gels at less or greater than these percentages presents handling problems (e.g., 0.4% agarose for genomic DNA partial digests requires a layer of supporting 0.8% gel). For normal samples make agarose gels at 0.7%. The chart below illustrates the optimal concentrations for fragment size separation. The values listed are approximate and can vary depending on the reference that is used. If you do not know your fragment sizes then the best approach is to start with a 0.7% gel and change subsequently if the desired separation is not achieved. Nucleic acids must be stained prior to visualization. Most laboratories use ethidium bromide but other stains (e.g., SYBR green, GelStar) are available. -
Discrete Cosine Transform Based Image Fusion Techniques VPS Naidu MSDF Lab, FMCD, National Aerospace Laboratories, Bangalore, INDIA E.Mail: [email protected]
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by NAL-IR Journal of Communication, Navigation and Signal Processing (January 2012) Vol. 1, No. 1, pp. 35-45 Discrete Cosine Transform based Image Fusion Techniques VPS Naidu MSDF Lab, FMCD, National Aerospace Laboratories, Bangalore, INDIA E.mail: [email protected] Abstract: Six different types of image fusion algorithms based on 1 discrete cosine transform (DCT) were developed and their , k 1 0 performance was evaluated. Fusion performance is not good while N Where (k ) 1 and using the algorithms with block size less than 8x8 and also the block 1 2 size equivalent to the image size itself. DCTe and DCTmx based , 1 k 1 N 1 1 image fusion algorithms performed well. These algorithms are very N 1 simple and might be suitable for real time applications. 1 , k 0 Keywords: DCT, Contrast measure, Image fusion 2 N 2 (k 1 ) I. INTRODUCTION 2 , 1 k 2 N 2 1 Off late, different image fusion algorithms have been developed N 2 to merge the multiple images into a single image that contain all useful information. Pixel averaging of the source images k 1 & k 2 discrete frequency variables (n1 , n 2 ) pixel index (the images to be fused) is the simplest image fusion technique and it often produces undesirable side effects in the fused image Similarly, the 2D inverse discrete cosine transform is defined including reduced contrast. To overcome this side effects many as: researchers have developed multi resolution [1-3], multi scale [4,5] and statistical signal processing [6,7] based image fusion x(n1 , n 2 ) (k 1 ) (k 2 ) N 1 N 1 techniques. -
Microchip Electrophoresis
Entry Microchip Electrophoresis Sammer-ul Hassan Mechanical Engineering, University of Southampton, Southampton SO17 1BJ, UK; [email protected] Definition: Microchip electrophoresis (MCE) is a miniaturized form of capillary electrophoresis. Electrophoresis is a common technique to separate macromolecules such as nucleic acids (DNA, RNA) and proteins. This technique has become a routine method for DNA size fragmenting and separating protein mixtures in most laboratories around the world. The application of higher voltages in MCE achieves faster and efficient electrophoretic separations. Keywords: electrophoresis; microchip electrophoresis; microfluidics; microfabrications 1. Introduction Electrophoresis is an analytical technique that has been applied to resolve complex mixtures containing DNA, proteins, and other chemical or biological species. Since its discovery in the 1930s by Arne [1], traditional slab gel electrophoresis (SGE) has been widely used until today. Meanwhile, new separation techniques based on electrophoresis continue to be developed in the 21st century, especially in life sciences. Capillary electrophoresis (CE) provides a higher resolution of the separated analytes and allows the automation of the operation. Thus, it has been widely used to characterize proteins and peptides [2], biopharmaceutical drugs [3], nucleic acids [4], and the genome [5]. The development of microfabrication techniques has led to the further miniaturization of electrophoresis known Citation: Hassan, S.-u. Microchip as microchip electrophoresis (MCE). MCE offers many advantages over conventional Electrophoresis. Encyclopedia 2021, 1, capillary electrophoresis techniques such as the integration of different separation functions 30–41. https://dx.doi.org/10.3390/ onto the chip, the consumption of small amounts of sample and reagents, faster analyses encyclopedia1010006 and efficient separations [6,7]. -
Temperature Compensation Circuit for ISFET Sensor
Journal of Low Power Electronics and Applications Article Temperature Compensation Circuit for ISFET Sensor Ahmed Gaddour 1,2,* , Wael Dghais 2,3, Belgacem Hamdi 2,3 and Mounir Ben Ali 3,4 1 National Engineering School of Monastir (ENIM), University of Monastir, Monastir 5000, Tunisia 2 Electronics and Microelectronics Laboratory, LR99ES30, Faculty of Sciences of Monastir, University of Monastir, Monastir 5000, Tunisia; [email protected] (W.D.); [email protected] (B.H.) 3 Higher Institute of Applied Sciences and Technology of Sousse (ISSATSo), University of Sousse, Sousse 4003, Tunisia; [email protected] 4 Nanomaterials, Microsystems for Health, Environment and Energy Laboratory, LR16CRMN01, Centre for Research on Microelectronics and Nanotechnology, Sousse 4034, Tunisia * Correspondence: [email protected]; Tel.: +216-50998008 Received: 3 November 2019; Accepted: 21 December 2019; Published: 4 January 2020 Abstract: PH measurements are widely used in agriculture, biomedical engineering, the food industry, environmental studies, etc. Several healthcare and biomedical research studies have reported that all aqueous samples have their pH tested at some point in their lifecycle for evaluation of the diagnosis of diseases or susceptibility, wound healing, cellular internalization, etc. The ion-sensitive field effect transistor (ISFET) is capable of pH measurements. Such use of the ISFET has become popular, as it allows sensing, preprocessing, and computational circuitry to be encapsulated on a single chip, enabling miniaturization and portability. However, the extracted data from the sensor have been affected by the variation of the temperature. This paper presents a new integrated circuit that can enhance the immunity of ion-sensitive field effect transistors (ISFET) against the temperature. -
QPNC-PAGE Standardized Protocol for Acidic, Basic and Neutral Metalloproteins MW 6 - > 200Kda USE ONLY FRESH GELS
QPNC-PAGE Standardized Protocol For Acidic, Basic and Neutral Metalloproteins MW 6 - > 200kDa USE ONLY FRESH GELS Correspondence: Bernd Kastenholz • Research Centre Juelich • Institute of Chemistry and Dynamics of the Geosphere – Phytosphere (ICG-3) • Juelich 52425 • Germany • E-mail: [email protected] Recommended Tools (Bio-Rad) Model 491 Prep Cell (U.S. patent no. 4,877,510) Power Pac 1000: Constant Power: 5 W; Time: 8 hr Model EP-1 Econo Pump: 1 mL/min; 5 mL/fraction; 80 mL prerun V; 480 ml total V (Eluent) Model 2110 Fraction Collector: 80 Fractions Model EM-1 Econo UV Monitor: AUFS 1.0; Detection Wavelength 254 nm Model 1327 Econo Recorder: Range: 100 mV; Chart Speed: 6 cm/hr Model SV-3 Diverter Ventil Buffer Recirculation Pump: Flow Rate: 95 mL/min (Electrophoresis Buffer) Stock Solutions 1) 200 mM Tris-HCl 10 mM NaN3 pH 10.00 – Keep RT. 2) 200 mM Tris-HCl 10 mM NaN3 pH 8.00 – Keep RT. 3) 40 % Acrylamide/Bis 2.67 % C - Keep 4°C. 4) 10 % Ammonium Persulfate (APS) - Keep 4°C (freshly prepared). Electrophoresis Buffer 20 mM Tris-HCL 1 mM NaN3 pH 10.00 degassed – Keep 4°C Upper Electrophoresis Chamber (Prep Cell): 500 mL Electrophoresis Buffer Lower Electrophoresis Chamber (Prep Cell): 2000 mL Electrophoresis Buffer Eluent 20 mM Tris-HCL 1 mM NaN3 pH 8.00 degassed – Keep 4°C Elution Chamber (Prep Cell): 700 mL Elution Buffer Separating Gel Acrylamide 4% T Volume: 40 mL ingredients: 4 mL 40 % Acrylamide/Bis 2.67 % C 4 mL 200 mM Tris-HCl 10 mM NaN3 pH 10.00 32 mL H2O 200 µL 10% APS 20 µL TEMED Add TEMED and APS at the end. -
Protein Blotting Guide
Electrophoresis and Blotting Protein Blotting Guide BEGIN Protein Blotting Guide Theory and Products Part 1 Theory and Products 5 Chapter 5 Detection and Imaging 29 Total Protein Detection 31 Transfer Buffer Formulations 58 5 Chapter 1 Overview of Protein Blotting Anionic Dyes 31 Towbin Buffer 58 Towbin Buffer with SDS 58 Transfer 6 Fluorescent Protein Stains 31 Stain-Free Technology 32 Bjerrum Schafer-Nielsen Buffer 58 Detection 6 Colloidal Gold 32 Bjerrum Schafer-Nielsen Buffer with SDS 58 CAPS Buffer 58 General Considerations and Workflow 6 Immunodetection 32 Dunn Carbonate Buffer 58 Immunodetection Workflow 33 0.7% Acetic Acid 58 Chapter 2 Methods and Instrumentation 9 Blocking 33 Protein Blotting Methods 10 Antibody Incubations 33 Detection Buffer Formulations 58 Electrophoretic Transfer 10 Washes 33 General Detection Buffers 58 Tank Blotting 10 Antibody Selection and Dilution 34 Total Protein Staining Buffers and Solutions 59 Semi-Dry Blotting 11 Primary Antibodies 34 Substrate Buffers and Solutions 60 Microfiltration (Dot Blotting) Species-Specific Secondary Antibodies 34 Stripping Buffer 60 Antibody-Specific Ligands 34 Blotting Systems and Power Supplies 12 Detection Methods 35 Tank Blotting Cells 12 Colorimetric Detection 36 Part 3 Troubleshooting 63 Mini Trans-Blot® Cell and Criterion™ Blotter 12 Premixed and Individual Colorimetric Substrates 38 Transfer 64 Trans-Blot® Cell 12 Immun-Blot® Assay Kits 38 Electrophoretic Transfer 64 Trans-Blot® Plus Cell 13 Immun-Blot Amplified AP Kit 38 Microfiltration 65 Semi-Dry Blotting Cells -
Blotting Complete Mini Mini Electro Blot System Electro Blot System
Blotting Complete Mini Mini Electro Blot System Electro Blot System Complete Mini MEBM10 Sub Blot System MEBM10 / MSB10 MV-10CBS Electro Blot Systems are primarily designed for wet electrophoresis of proteins, and offer a combination of increased capacity with economical features. Electro Blot Systems have increased capacity over standard systems. Up to five gel blot cassettes may be utilized at any time for Electro Blot Mini. This is especially intensity coiled electrode and ensures uniform transfer across the blot surface. The cassette’s open architecture that ensures the maximum blot area allows direct transfer of current. Its rigid construction that ensures contact between the gel and membrane is retained throughout the blot and an even pressure is maintained. These units are compatible with magnetic stirrers to aid heat dispersal and prevent pH drifts in the buffer due to incomplete buffer mixing. Each unit includes a cooling pack to further enhance transfer efficiency by removing excess heat. This also saves buffer for added economy. The Complete Electrophoresis Systems include both modules for gel electrophoresis, electroblotting and accessories, to provide a complete Mini gel Complete Mini Electro & Blot System casting, running and electroblotting system. The electroblotting module includes four inter-locking cassettes and sixteen fiber pads. A high intensity current is generated by coiled platinum electrodes. These features, in conjunction with the advanced cooling system allow for rapid electroblotting in as little as one hour. MV-10CBS For MEBM series Features • Ideal for wet electroblotting of proteins – Western Blotting • Hinged cassettes for added convenience • Accommodates gel thickness from 0.25 to 3mm For MV-CBS series Features • Versatile: Interchangeable modules for slab gel and Electroblotting using a single universal buffer tank • Hinged cassettes • High intensity electrodes • blot capacity • Rapid set-up cooling 32 Blotting Cat. -
A Novel MEMS Pressure Sensor with MOSFET on Chip
A Novel MEMS Pressure Sensor with MOSFET on Chip Zhao-Hua Zhang *, Yan-Hong Zhang, Li-Tian Liu, Tian-Ling Ren Tsinghua National Laboratory for Information Science and Technology Institute of Microelectronics, Tsinghua University Beijing 100084, China [email protected] Abstract—A novel MOSFET pressure sensor was proposed Figure 1. Two PMOSFET’s and two piezoresistors are based on the MOSFET stress sensitive phenomenon, in which connected to form a Wheatstone bridge. To obtain the the source-drain current changes with the stress in channel maximum sensitivity, these components are placed near the region. Two MOSFET’s and two piezoresistors were employed four sides of the silicon diaphragm, which are the high stress to form a Wheatstone bridge served as sensitive unit in the regions. The MOSFET’s has the same structure parameter novel sensor. Compared with the traditional piezoresistive W/L, same threshold voltage VT and gate-source voltage VGS pressure sensor, this MOSFET sensor’s sensitivity is improved (equal to VG-Vdd). They are designed to work in the significantly, meanwhile the power consumption can be saturation region. The piezoresistors also have the same decreased. The fabrication of the novel pressure sensor is low- resistance R . cost and compatible with standard IC process. It shows the 0 great promising application of MOSFET-bridge-circuit structure for the high performance pressure sensor. This kind of MEMS pressure sensor with signal process circuit on the same chip can be used in positive or negative Tire Pressure Monitoring System (TPMS) which is very hot in automotive electron research field. I. -
Simplifying Current Sensing (Rev. A)
Simplifying Current Sensing How to design with current sense amplifiers Table of contents Introduction . 3 Chapter 4: Integrating the current-sensing signal chain Chapter 1: Current-sensing overview Integrating the current-sensing signal path . 40 Integrating the current-sense resistor . 42 How integrated-resistor current sensors simplify Integrated, current-sensing PCB designs . 4 analog-to-digital converter . 45 Shunt-based current-sensing solutions for BMS Enabling Precision Current Sensing Designs with applications in HEVs and EVs . 6 Non-Ratiometric Magnetic Current Sensors . 48 Common uses for multichannel current monitoring . 9 Power and energy monitoring with digital Chapter 5: Wide VIN and isolated current sensors . 11 current measurement 12-V Battery Monitoring in an Automotive Module . 14 Simplifying voltage and current measurements in Interfacing a differential-output (isolated) amplifier battery test equipment . 17 to a single-ended-input ADC . 50 Extending beyond the maximum common-mode range of discrete current-sense amplifiers . 52 Chapter 2: Out-of-range current measurements Low-Drift, Precision, In-Line Isolated Magnetic Motor Current Measurements . 55 Measuring current to detect out-of-range conditions . 20 Monitoring current for multiple out-of-range Authors: conditions . 22 Scott Hill, Dennis Hudgins, Arjun Prakash, Greg Hupp, High-side motor current monitoring for overcurrent protection . 25 Scott Vestal, Alex Smith, Leaphar Castro, Kevin Zhang, Maka Luo, Raphael Puzio, Kurt Eckles, Guang Zhou, Chapter 3: Current sensing in Stephen Loveless, Peter Iliya switching systems Low-drift, precision, in-line motor current measurements with enhanced PWM rejection . 28 High-side drive, high-side solenoid monitor with PWM rejection . 30 Current-mode control in switching power supplies . -
Integrated Switch Current Sensor for Shortcircuit Protection and Current Control of 1.7-Kv Sic MOSFET Modules
Integrated Switch Current Sensor for Shortcircuit Protection and Current Control of 1.7-kV SiC MOSFET Modules Jun Wang, Zhiyu Shen, Rolando Burgos, Dushan Boroyevich Center for Power Electronics Systems Virginia Polytechnic Institute and State Blacksburg, VA 24061, USA [email protected] Abstract—This paper presents design and implementations of a switch current sensor based on Rogowski coils. The current sensor is designed to address the issue of using desaturation circuit to protect the SiC MOSFET during shortcircuit. Specifications are given to meet the application requirement for SiC MOSFETs. It is also designed for high accuracy and high bandwidth for converter current control. PCB-based winding and shielding layout is proposed to minimize the noises caused by the high dv/dt at switching. The coil on PCB are modeled by impedance measurement, thus the bandwidth of coil is calculated. At the end, various test results are demonstrated to validate the great performance of the switch current sensor. Fig. 1. Output characteristics comparison: Si IGBT vs. SiC MOSFET Keywords—current sensing; Rogowski; SiC MOSFET; shortcircuit; current control I. INTRODUCTION SiC MOSFET, as a wide-bandgap device, has superior performance for its high breakdown electric field, low on-state resistance, fast switching speed and high working temperature [1]. High switching speed enables high switching frequency, which improves the power density of high power converters. The gradual cost reduction and packaging advancement bring a Fig. 2. Principle shortcircuit current comparison: Si IGBT vs. SiC MOSFET promising trend of replacing the conventional Si IGBTs with SiC MOSFET modules in high power applications. quickly and reaches its saturation value, where the VCE hits the Shortcircuit protection is one of the major challenges protection threshold value (“Fault detection” in the Fig.1). -
Two-Dimensional Electrochromatography/Capillary Electrophoresis on a Microchip
Frederick Conference on Capillary Electrophoresis, Hood College, Frederick, Maryland October 16-28, 2000 Two-Dimensional Electrochromatography/Capillary Electrophoresis on a Microchip Norbert Gottschlich, Stephen C. Jacobson, Christopher T. Culbertson, and J. Michael Ramsey Oak Ridge National Laboratory, Oak Ridge, TN 37831-6142 Two-dimensional (2D) separation methods for the analysis of complex protein or peptide mixtures have mostly been performed on planar gels using isoelectric focusing and polyacrylamide gel electrophoresis (IEF-PAGE). However, these techniques can be slow and labor intensive. Recently, several column-based two-dimensional separation schemes have been developed to reduce the analysis time. Another approach is to use microfluidic devices (microchips) that enable very fast and efficient separations. Furthermore, microchips are relatively easy to operate and allow the manipulation of very small sample volumes with minimal dead volumes between interconnecting channels. These features are especially useful for the development of multidimensional separations. We will report a comprehensive two-dimensional separation system on a microfabricated device that utilizes open-channel electrochromatography as the first dimension and capillary electrophoresis as the second dimension. The first dimension is operated under isocratic conditions, and its effluent is injected into the second dimension every few seconds. A 25 cm long separation channel with spiral geometry for the first dimension, chemically modified with octadecylsilane, is coupled to a 1.2 cm long straight separation channel for the second dimension. Fluorescently labeled products from tryptic digests of proteins are analyzed in 13 minutes with this system. Research sponsored by Office of Research and Development, U.S. Department of Energy, under contract DE-AC05-00OR22725 with Oak Ridge National Laboratory, managed and operated by UT-Battelle, LLC.. -
Development of MEMS Capacitive Sensor Using a MOSFET Structure
Extended Summary 本文は pp.102-107 Development of MEMS Capacitive Sensor Using a MOSFET Structure Hayato Izumi Non-member (Kansai University, [email protected]) Yohei Matsumoto Non-member (Kansai University, [email protected] u.ac.jp) Seiji Aoyagi Member (Kansai University, [email protected] u.ac.jp) Yusaku Harada Non-member (Kansai University, [email protected] u.ac.jp) Shoso Shingubara Non-member (Kansai University, [email protected]) Minoru Sasaki Member (Toyota Technological Institute, [email protected]) Kazuhiro Hane Member (Tohoku University, [email protected]) Hiroshi Tokunaga Non-member (M. T. C. Corp., [email protected]) Keywords : MOSFET, capacitive sensor, accelerometer, circuit for temperature compensation The concept of a capacitive MOSFET sensor for detecting voltage change, is proposed (Fig. 4). This circuitry is effective for vertical force applied to its floating gate was already reported by compensating ambient temperature, since two MOSFETs are the authors (Fig. 1). This sensor detects the displacement of the simultaneously suffer almost the same temperature change. The movable gate electrode from changes in drain current, and this performance of this circuitry is confirmed by SPICE simulation. current can be amplified electrically by adding voltage to the gate, The operating point, i.e., the output voltage, is stable irrespective i.e., the MOSFET itself serves as a mechanical sensor structure. of the ambient temperature change (Fig. 5(a)). The output voltage Following this, in the present paper, a practical test device is has comparatively good linearity to the gap length, which would fabricated.