Proteolytically Released Lasso/Teneurin-2 Induces Axonal
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1 Metabolic Dysfunction Is Restricted to the Sciatic Nerve in Experimental
Page 1 of 255 Diabetes Metabolic dysfunction is restricted to the sciatic nerve in experimental diabetic neuropathy Oliver J. Freeman1,2, Richard D. Unwin2,3, Andrew W. Dowsey2,3, Paul Begley2,3, Sumia Ali1, Katherine A. Hollywood2,3, Nitin Rustogi2,3, Rasmus S. Petersen1, Warwick B. Dunn2,3†, Garth J.S. Cooper2,3,4,5* & Natalie J. Gardiner1* 1 Faculty of Life Sciences, University of Manchester, UK 2 Centre for Advanced Discovery and Experimental Therapeutics (CADET), Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Sciences Centre, Manchester, UK 3 Centre for Endocrinology and Diabetes, Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, UK 4 School of Biological Sciences, University of Auckland, New Zealand 5 Department of Pharmacology, Medical Sciences Division, University of Oxford, UK † Present address: School of Biosciences, University of Birmingham, UK *Joint corresponding authors: Natalie J. Gardiner and Garth J.S. Cooper Email: [email protected]; [email protected] Address: University of Manchester, AV Hill Building, Oxford Road, Manchester, M13 9PT, United Kingdom Telephone: +44 161 275 5768; +44 161 701 0240 Word count: 4,490 Number of tables: 1, Number of figures: 6 Running title: Metabolic dysfunction in diabetic neuropathy 1 Diabetes Publish Ahead of Print, published online October 15, 2015 Diabetes Page 2 of 255 Abstract High glucose levels in the peripheral nervous system (PNS) have been implicated in the pathogenesis of diabetic neuropathy (DN). However our understanding of the molecular mechanisms which cause the marked distal pathology is incomplete. Here we performed a comprehensive, system-wide analysis of the PNS of a rodent model of DN. -
Cellular and Molecular Signatures in the Disease Tissue of Early
Cellular and Molecular Signatures in the Disease Tissue of Early Rheumatoid Arthritis Stratify Clinical Response to csDMARD-Therapy and Predict Radiographic Progression Frances Humby1,* Myles Lewis1,* Nandhini Ramamoorthi2, Jason Hackney3, Michael Barnes1, Michele Bombardieri1, Francesca Setiadi2, Stephen Kelly1, Fabiola Bene1, Maria di Cicco1, Sudeh Riahi1, Vidalba Rocher-Ros1, Nora Ng1, Ilias Lazorou1, Rebecca E. Hands1, Desiree van der Heijde4, Robert Landewé5, Annette van der Helm-van Mil4, Alberto Cauli6, Iain B. McInnes7, Christopher D. Buckley8, Ernest Choy9, Peter Taylor10, Michael J. Townsend2 & Costantino Pitzalis1 1Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. Departments of 2Biomarker Discovery OMNI, 3Bioinformatics and Computational Biology, Genentech Research and Early Development, South San Francisco, California 94080 USA 4Department of Rheumatology, Leiden University Medical Center, The Netherlands 5Department of Clinical Immunology & Rheumatology, Amsterdam Rheumatology & Immunology Center, Amsterdam, The Netherlands 6Rheumatology Unit, Department of Medical Sciences, Policlinico of the University of Cagliari, Cagliari, Italy 7Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow G12 8TA, UK 8Rheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Birmingham B15 2WB, UK 9Institute of -
Investigation of the Underlying Hub Genes and Molexular Pathogensis in Gastric Cancer by Integrated Bioinformatic Analyses
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Investigation of the underlying hub genes and molexular pathogensis in gastric cancer by integrated bioinformatic analyses Basavaraj Vastrad1, Chanabasayya Vastrad*2 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423656; this version posted December 22, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract The high mortality rate of gastric cancer (GC) is in part due to the absence of initial disclosure of its biomarkers. The recognition of important genes associated in GC is therefore recommended to advance clinical prognosis, diagnosis and and treatment outcomes. The current investigation used the microarray dataset GSE113255 RNA seq data from the Gene Expression Omnibus database to diagnose differentially expressed genes (DEGs). Pathway and gene ontology enrichment analyses were performed, and a proteinprotein interaction network, modules, target genes - miRNA regulatory network and target genes - TF regulatory network were constructed and analyzed. Finally, validation of hub genes was performed. The 1008 DEGs identified consisted of 505 up regulated genes and 503 down regulated genes. -
Teneurin 2 in Neuronal Network Formation 4699
Development 129, 4697-4705 (2002) 4697 Printed in Great Britain © The Company of Biologists Limited 2002 DEV1819 Teneurin 2 is expressed by the neurons of the thalamofugal visual system in situ and promotes homophilic cell-cell adhesion in vitro Beatrix P. Rubin1,*, Richard P. Tucker2,*, Marianne Brown-Luedi1, Doris Martin1 and Ruth Chiquet-Ehrismann1,† 1Friedrich Miescher Institute, Novartis Research Foundation, PO Box 2543, CH-4002 Basel, Switzerland 2Department of Cell Biology and Human Anatomy, University of California at Davis, Davis, CA 95616, USA *These authors contributed equally to this work †Author for correspondence (e-mail: [email protected]) Accepted 20 June 2002 SUMMARY The transmembrane glycoprotein teneurin 2 is expressed domain of teneurin 2 by HT1080 cells induced cell by neurons in the developing avian thalamofugal visual aggregation, and the extracellular domain of teneurin 2 system at periods that correspond with target recognition became concentrated at sites of cell-cell contact in and synaptogenesis. Partial and full-length teneurin 2 neuroblastoma cells. These observations indicate that the constructs were expressed in cell lines in vitro. Expression homophilic binding of teneurin 2 may play a role in the of the cytoplasmic domain is required for the induction of development of specific neuronal circuits in the developing filopodia, the transport of teneurin 2 into neurites and visual system. the co-localization of teneurin 2 with the cortical actin cytoskeleton. In addition, expression of the extracellular Key words: DOC4, Neurestin, Odz, Tenm, Tena, Ten-m, Chicken INTRODUCTION in a signal transduction cascade, as mutational analysis showed that ten-m/odz is a member of the ‘pair-rule’ gene family and Teneurins are a family of type II transmembrane proteins has a central role in determining the segmentation of the originally discovered in Drosophila. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Effects of EHP-101 on Inflammation and Remyelination in Murine Models
Neurobiology of Disease 143 (2020) 104994 Contents lists available at ScienceDirect Neurobiology of Disease journal homepage: www.elsevier.com/locate/ynbdi Effects of EHP-101 on inflammation and remyelination in murine modelsof T Multiple sclerosis Carmen Navarretea, Adela García-Martinb, Martín Garrido-Rodríguezc,d,e, Leyre Mestref, ⁎ Ana Feliúf, Carmen Guazaf, Marco A. Calzadoc,d,e, Eduardo Muñozc,d,e, a Emerald Health Pharmaceuticals, San Diego, CA, USA b Emerald Health Biotechnology, Córdoba, Spain c Instituto Maimónides de Investigación Biomédica de Córdoba, Spain d Departamento de Biología Celular, Fisiología e Inmunología, Universidad de Córdoba, Spain e Hospital Universitario Reina Sofía, Córdoba, Spain f Departamento de Neurobiología Funcional y de Sistemas, Instituto Cajal-CSIC, Madrid, Spain ARTICLE INFO ABSTRACT Keywords: Multiple Sclerosis (MS) is characterized by a combination of inflammatory and neurodegenerative processes in Multiple sclerosis the spinal cord and the brain. Natural and synthetic cannabinoids such as VCE-004.8 have been studied in EHP-101 preclinical models of MS and represent promising candidates for drug development. VCE-004.8 is a multitarget Transcriptomic synthetic cannabidiol (CBD) derivative acting as a dual Peroxisome proliferator-activated receptor-gamma/ Inflammation Cannabinoid receptor type 2 (PPARγ/CB2) ligand agonist that also activates the Hypoxia-inducible factor (HIF) Remyelination pathway. EHP-101 is an oral lipidic formulation of VCE-004.8 that has shown efficacy in several preclinical models of autoimmune, inflammatory, fibrotic, and neurodegenerative diseases. EHP-101 alleviated clinical symptomatology in EAE and transcriptomic analysis demonstrated that EHP-101 prevented the expression of many inflammatory genes closely associated with MS pathophysiology in the spinal cord. -
Biological Models of Colorectal Cancer Metastasis and Tumor Suppression
BIOLOGICAL MODELS OF COLORECTAL CANCER METASTASIS AND TUMOR SUPPRESSION PROVIDE MECHANISTIC INSIGHTS TO GUIDE PERSONALIZED CARE OF THE COLORECTAL CANCER PATIENT By Jesse Joshua Smith Dissertation Submitted to the Faculty of the Graduate School of Vanderbilt University In partial fulfillment of the requirements For the degree of DOCTOR OF PHILOSOPHY In Cell and Developmental Biology May, 2010 Nashville, Tennessee Approved: Professor R. Daniel Beauchamp Professor Robert J. Coffey Professor Mark deCaestecker Professor Ethan Lee Professor Steven K. Hanks Copyright 2010 by Jesse Joshua Smith All Rights Reserved To my grandparents, Gladys and A.L. Lyth and Juanda Ruth and J.E. Smith, fully supportive and never in doubt. To my amazing and enduring parents, Rebecca Lyth and Jesse E. Smith, Jr., always there for me. .my sure foundation. To Jeannine, Bill and Reagan for encouragement, patience, love, trust and a solid backing. To Granny George and Shawn for loving support and care. And To my beautiful wife, Kelly, My heart, soul and great love, Infinitely supportive, patient and graceful. ii ACKNOWLEDGEMENTS This work would not have been possible without the financial support of the Vanderbilt Medical Scientist Training Program through the Clinical and Translational Science Award (Clinical Investigator Track), the Society of University Surgeons-Ethicon Scholarship Fund and the Surgical Oncology T32 grant and the Vanderbilt Medical Center Section of Surgical Sciences and the Department of Surgical Oncology. I am especially indebted to Drs. R. Daniel Beauchamp, Chairman of the Section of Surgical Sciences, Dr. James R. Goldenring, Vice Chairman of Research of the Department of Surgery, Dr. Naji N. -
Genomics of Inherited Bone Marrow Failure and Myelodysplasia Michael
Genomics of inherited bone marrow failure and myelodysplasia Michael Yu Zhang A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2015 Reading Committee: Mary-Claire King, Chair Akiko Shimamura Marshall Horwitz Program Authorized to Offer Degree: Molecular and Cellular Biology 1 ©Copyright 2015 Michael Yu Zhang 2 University of Washington ABSTRACT Genomics of inherited bone marrow failure and myelodysplasia Michael Yu Zhang Chair of the Supervisory Committee: Professor Mary-Claire King Department of Medicine (Medical Genetics) and Genome Sciences Bone marrow failure and myelodysplastic syndromes (BMF/MDS) are disorders of impaired blood cell production with increased leukemia risk. BMF/MDS may be acquired or inherited, a distinction critical for treatment selection. Currently, diagnosis of these inherited syndromes is based on clinical history, family history, and laboratory studies, which directs the ordering of genetic tests on a gene-by-gene basis. However, despite extensive clinical workup and serial genetic testing, many cases remain unexplained. We sought to define the genetic etiology and pathophysiology of unclassified bone marrow failure and myelodysplastic syndromes. First, to determine the extent to which patients remained undiagnosed due to atypical or cryptic presentations of known inherited BMF/MDS, we developed a massively-parallel, next- generation DNA sequencing assay to simultaneously screen for mutations in 85 BMF/MDS genes. Querying 71 pediatric and adult patients with unclassified BMF/MDS using this assay revealed 8 (11%) patients with constitutional, pathogenic mutations in GATA2 , RUNX1 , DKC1 , or LIG4 . All eight patients lacked classic features or laboratory findings for their syndromes. -
ETH23721.Pdf
Research Collection Doctoral Thesis The Importance of Clathrin-Mediated Endocytosis in Adult Myelinating Schwann Cells Author(s): Gerber, Daniel Paul Publication Date: 2016 Permanent Link: https://doi.org/10.3929/ethz-a-010735322 Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library ACHTUNG: ERSTE SETIE NICHT DRUCKEN (Druckbefehl von: 1-200) DISS. ETH No. 23721 The Importance of Clathrin-Mediated Endocytosis in Adult Myelinating Schwann Cells a thesis submitted to attain the degree of DOCTOR OF SCIENCES of ETH ZURICH (Dr. sc. ETH Zurich) presented by DANIEL PAUL GERBER MSc ETH Biology born 03.10.1987 citizen of Zurich (ZH) accepted on the recommendation of Prof. Dr. Ueli Suter (referee) Prof. Dr. Claire Jacob (co-referee) Prof. Dr. Bernd Wollscheid (co-referee) Dr. Axel Niemann (co-referee) 2016 Introduction 2 Summary Mutations in dynamin 2 (DNM2) have been reported to cause Charcot-Marie-Tooth (CMT) disease, the most prevalent hereditary neuropathy of the peripheral nervous system. The ubiquitously expressed dynamin 2 has a wide range of cellular functions, being involved in various forms of endocytosis, vesicular trafficking and cytoskeletal remodelling. However, its physiological role in the CMT-relevant cell types is poorly understood, which has made it difficult to understand the pathomechanisms leading to CMT. Hence, we generated a Schwann cell-specific inducible knockout mouse (Dnm2iko) to investigate the physiological role of Dnm2 in adult myelinating Schwann cells. Four weeks after induction, Dnm2iko mice developed a severe demyelinating phenotype with paraparesis followed by spontaneous recovery, a clinical course reminiscent of an acute inflammatory demyelinating polyneuropathy (AIDP), the most common subtype of Guillain-Barré-Syndrom (GBS). -
Transcriptomic Changes Resulting from STK32B Overexpression Identifies Pathways Potentially Relevant to Essential Tremor
bioRxiv preprint doi: https://doi.org/10.1101/552901; this version posted May 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Transcriptomic changes resulting from 2 STK$%B overexpression identifies pathways 3 potentially relevant to essential tremor 4 Calwing Liao.,0, Faezeh Sarayloo.,0, Veikko Vuokila0, Daniel Rochefort0, Fulya Akçimen.,0, 5 Simone Diamond0, Alexandre D. Laporte0, Dan Spiegelman0, Qin HeJ, Hélène Catoire0, Patrick A. 6 Dion0,O, Guy A. Rouleau.,0,O 7 8 .Department of Human GeneticS, McGill University, Montréal, Quebec, Canada 9 0Montreal Neurological Institute, McGill University, Montréal, Quebec, Canada. 10 JDepartment of Biomedical ScienceS, Université de Montréal, Montréal, Quebec, Canada 11 ODepartment of Neurology and Neurosurgery, McGill University, Montréal, Quebec, Canada 12 13 Corresponding Author: 14 Dr. Guy A. Rouleau, MD, PhD, FRCPC, OQ 15 Department of Neurology and Neurosurgery 16 McGill University 17 Montréal, Québec, Canada 18 HJA 0BO 19 E-mail: [email protected] 20 21 Keywords: STK$%B, eSSential tremor, transcriptome, FUS 22 Conflict of Interests: All authors report no conflict of intereStS. 23 Funding Sources: Canadian InstituteS of Health ReSearch 24 bioRxiv preprint doi: https://doi.org/10.1101/552901; this version posted May 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
SF3B1-Mutated Chronic Lymphocytic Leukemia Shows Evidence Of
SF3B1-mutated chronic lymphocytic leukemia shows evidence of NOTCH1 pathway activation including CD20 downregulation by Federico Pozzo, Tamara Bittolo, Erika Tissino, Filippo Vit, Elena Vendramini, Luca Laurenti, Giovanni D'Arena, Jacopo Olivieri, Gabriele Pozzato, Francesco Zaja, Annalisa Chiarenza, Francesco Di Raimondo, Antonella Zucchetto, Riccardo Bomben, Francesca Maria Rossi, Giovanni Del Poeta, Michele Dal Bo, and Valter Gattei Haematologica 2020 [Epub ahead of print] Citation: Federico Pozzo, Tamara Bittolo, Erika Tissino, Filippo Vit, Elena Vendramini, Luca Laurenti, Giovanni D'Arena, Jacopo Olivieri, Gabriele Pozzato, Francesco Zaja, Annalisa Chiarenza, Francesco Di Raimondo, Antonella Zucchetto, Riccardo Bomben, Francesca Maria Rossi, Giovanni Del Poeta, Michele Dal Bo, and Valter Gattei SF3B1-mutated chronic lymphocytic leukemia shows evidence of NOTCH1 pathway activation including CD20 downregulation. Haematologica. 2020; 105:xxx doi:10.3324/haematol.2020.261891 Publisher's Disclaimer. E-publishing ahead of print is increasingly important for the rapid dissemination of science. Haematologica is, therefore, E-publishing PDF files of an early version of manuscripts that have completed a regular peer review and have been accepted for publication. E-publishing of this PDF file has been approved by the authors. After having E-published Ahead of Print, manuscripts will then undergo technical and English editing, typesetting, proof correction and be presented for the authors' final approval; the final version of the manuscript will -
Exploring the Molecular Pathophysiological Mechanisms In
Exploring the Molecular Pathophysiological Mechanisms in Hypomyelinating Leukodystrophies Resulting from Recessive Mutations in EPRS, RARS, and DARS Mariana Gutierrez Salazar, Human Genetics, McGill University, Montreal May 2017 A thesis submitted to McGill University in partial fulfillment of the degree of Master of Science © Mariana Gutierrez Salazar, 2017 1 Table of Contents Abstract ..................................................................................................................................... 6 Résumé...................................................................................................................................... 8 Acknowledgements ................................................................................................................. 10 List of Figures and Tables ...................................................................................................... 12 List of Abbreviations .............................................................................................................. 14 Chapter 1: Introduction 1.1 Overview ...................................................................................................................... 21 1.1.2 Hypothesis .......................................................................................................... 23 1.1.3 Project Rationale ................................................................................................ 23 1.1.4 Specific Aims ....................................................................................................