Adaptation to Deep-Sea Hydrothermal Vents: Some Molecular and Developmental Aspects
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Microbial Interactions with Arsenite, Hydrogen and Sulfide In
MICROBIAL INTERACTIONS WITH ARSENITE, HYDROGEN AND SULFIDE IN AN ACID-SULFATE-CHLORIDE GEOTHERMAL SPRING by Seth D’Imperio A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Ecology and Environmental Sciences MONTANA STATE UNIVERSITY Bozeman, Montana April, 2008 ©COPYRIGHT by Seth D’Imperio 2008 All Rights Reserved ii APPROVAL of a dissertation submitted by Seth D’Imperio This dissertation has been read by each member of the dissertation committee and has been found to be satisfactory regarding content, English usage, format, citation, bibliographic style, and consistency, and is ready for submission to the Division of Graduate Education. Dr. Timothy R. McDermott Approved for the Department Land Resources and Environmental Science Dr. Jon M. Wraith Approved for the Division of Graduate Education Dr. Carl A. Fox iii STATEMENT OF PERMISSION TO USE In presenting this dissertation in partial fulfillment of the requirements for a doctoral degree at Montana State University, I agree that the Library shall make it available to borrowers under rules of the Library. I further agree that copying of this dissertation is allowable only for scholarly purposes, consistent with “fair use” as prescribed in the U.S. Copyright Law. Requests for extensive copying or reproduction of this dissertation should be referred to ProQuest Information and Learning, 300 North Zeeb Road, Ann Arbor, Michigan 48106, to whom I have granted “the exclusive right to reproduce and distribute my dissertation in and from microform along with the non- exclusive right to reproduce and distribute my abstract in any format in whole or in part.” Seth D’Imperio April 2008 iv ACKNOWLEDGEMENTS Firstly, I would like to thank Dr. -
Classification
Science Classification Pupil Workbook Year 5 Unit 5 Name: 2 3 Existing Knowledge: Why do we put living things into different groups and what are the groups that we can separate them into? You can think about the animals in the picture and all the others that you know. 4 Session 1: How do we classify animals with a backbone? Key Knowledge Key Vocabulary Animals known as vertebrates have a spinal column. Vertebrates Some vertebrates are warm-blooded meaning that they Species maintain a consistent body temperature. Some are cold- Habitat blooded, meaning they need to move around to warm up or cool down. Spinal column Vertebrates are split into five main groups known as Warm-blooded/Cold- mammals, amphibians, reptiles, birds and fish. blooded Task: Look at the picture here and think about the different groups that each animal is part of. How is each different to the others and which other animals share similar characteristics? Write your ideas here: __________________________ __________________________ __________________________ __________________________ __________________________ __________________________ ____________________________________________________ ____________________________________________________ ____________________________________________________ ____________________________________________________ ____________________________________________________ 5 How do we classify animals with a backbone? Vertebrates are the most advanced organisms on Earth. The traits that make all of the animals in this group special are -
Role of Chemolithoautotrophic Microorganisms Involved in Nitrogen and Sulfur Cycling in Coastal Marine Sediments
Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments Yvonne Antonia Lipsewers THIS RESEARCH WAS FINANCIALLY SUPPORTED BY DARWIN CENTER FOR BIOGEOSCIENCES NIOZ – ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH ISBN: 978-90-6266-492-4 Cover photos: S. Rampen, L. Villanueva, M. van der Meer Printed by Ipskamp Printing, The Netherlands Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments De rol van chemolithoautotrofe micro-organismen die deelnemen in de stikstof- en zwavelcyclus in mariene kustsedimenten (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. G.J. van der Zwaan, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op dinsdag 5 december 2017 des ochtends te 10.30 uur door Yvonne Antonia Lipsewers geboren op 18 juli 1977 te Salzkotten, Duitsland Promotor: Prof. dr. ir. J.S. Sinninghe Damsté Copromotor: Dr. L. Villanueva „Hinterher ist man immer schlauer…“ Für meine Familie Table of contents Chapter 1 – Introduction .....................................................................................................1 Chapter 2 – Seasonality and depth distribution of the abundance and activity of am- monia oxidizing microorganisms in marine coastal sediments (North Sea) ..........23 Chapter 3 – Lack of 13C-label incorporation suggests low turnover rates of thaumar- chaeal intact -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
A Bioturbation Classification of European Marine Infaunal
A bioturbation classification of European marine infaunal invertebrates Ana M. Queiros 1, Silvana N. R. Birchenough2, Julie Bremner2, Jasmin A. Godbold3, Ruth E. Parker2, Alicia Romero-Ramirez4, Henning Reiss5,6, Martin Solan3, Paul J. Somerfield1, Carl Van Colen7, Gert Van Hoey8 & Stephen Widdicombe1 1Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, U.K. 2The Centre for Environment, Fisheries and Aquaculture Science, Pakefield Road, Lowestoft, NR33 OHT, U.K. 3Department of Ocean and Earth Science, National Oceanography Centre, University of Southampton, Waterfront Campus, European Way, Southampton SO14 3ZH, U.K. 4EPOC – UMR5805, Universite Bordeaux 1- CNRS, Station Marine d’Arcachon, 2 Rue du Professeur Jolyet, Arcachon 33120, France 5Faculty of Biosciences and Aquaculture, University of Nordland, Postboks 1490, Bodø 8049, Norway 6Department for Marine Research, Senckenberg Gesellschaft fu¨ r Naturforschung, Su¨ dstrand 40, Wilhelmshaven 26382, Germany 7Marine Biology Research Group, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium 8Bio-Environmental Research Group, Institute for Agriculture and Fisheries Research (ILVO-Fisheries), Ankerstraat 1, Ostend 8400, Belgium Keywords Abstract Biodiversity, biogeochemical, ecosystem function, functional group, good Bioturbation, the biogenic modification of sediments through particle rework- environmental status, Marine Strategy ing and burrow ventilation, is a key mediator of many important geochemical Framework Directive, process, trait. processes in marine systems. In situ quantification of bioturbation can be achieved in a myriad of ways, requiring expert knowledge, technology, and Correspondence resources not always available, and not feasible in some settings. Where dedi- Ana M. Queiros, Plymouth Marine cated research programmes do not exist, a practical alternative is the adoption Laboratory, Prospect Place, The Hoe, Plymouth PL1 3DH, U.K. -
Thelepus Crispus Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Thelepus crispus Class: Polychaeta, Sedentaria, Canalipalpata Order: Terebellida, Terebellomorpha A terebellid worm Family: Terebellidae, Theleponinae Description (Hartman 1969). Notosetae present from Size: Individuals range in size from 70–280 second branchial segment (third body mm in length (Hartman 1969). The greatest segment) and continue almost to the worm body width at segments 10–16 is 13 mm (88 posterior (to 14th segment from end in mature –147 segments). The dissected individual specimens) (Hutchings and Glasby 1986). All on which this description is based was 120 neurosetae short handled, avicular (bird-like) mm in length (from Coos Bay, Fig. 1). uncini, imbedded in a single row on oval- Color: Pinkish orange and cream with bright shaped tori (Figs. 3, 5) where the single row red branchiae, dark pink prostomium and curves into a hook, then a ring in latter gray tentacles and peristomium. segments (Fig. 3). Each uncinus bears a General Morphology: Worm rather stout thick, short fang surmounted by 4–5 small and cigar-shaped. teeth (Hartman 1969) (two in this specimen) Body: Two distinct body regions consisting (Fig. 4). Uncini begin on the fifth body of a broad thorax with neuro- and notopodia segment (third setiger), however, Johnson and a tapering abdomen with only neuropo- (1901) and Hartman (1969) have uncini dia. beginning on setiger two. Anterior: Prostomium reduced, with Eyes/Eyespots: None. ample dorsal flap transversely corrugated Anterior Appendages: Feeding tentacles are dorsally (Fig. 5). Peristomium with circlet of long (Fig. 1), filamentous, white and mucus strongly grooved, unbranched tentacles (Fig. covered. 5), which cannot be retracted fully (as in Am- Branchiae: Branchiae present (subfamily pharctidae). -
In Worms Geoff Read NIWA New Zealand
Brussels, 28-30 September Polychaeta (Annelida) in WoRMS Geoff Read NIWA New Zealand www.marinespecies.org/polychaeta/index.php Context interface Swimming — an unexpected skill of Polychaeta Acrocirridae Alciopidae Syllidae Nereididae Teuthidodr ilus = squidworm Acrocirridae Polynoidae Swima bombiviridis Syllidae Total WoRMS Polychaeta records, excluding fossils 91 valid families. Entries >98% editor checked, except Echiura (69%) Group in WoRMS all taxa all species valid species names names names Class Polychaeta 23,872 20,135 11,615 Subclass Echiura 296 234 197 Echiura were recently a Subclass Errantia 12,686 10,849 6,210 separate phylum Subclass Polychaeta incertae sedis 354 265 199 Subclass Sedentaria 10,528 8,787 5,009 Non-marine Polychaeta 28 16 (3 terrestrial) Class Clitellata* 1601 1086 (279 Hirudinea) *Total valid non-leech clitellates~5000 spp, 1700 aquatic. (Martin et al. 2008) Annelida diversity "It is now clear that annelids, in addition to including a large number of species, encompass a much greater disparity of body plans than previously anticipated, including animals that are segmented and unsegmented, with and without parapodia, with and without chaetae, coelomate and acoelomate, with straight guts and with U-shaped digestive tracts, from microscopic to gigantic." (Andrade et al. 2015) Andrade et al (2015) “Articulating “archiannelids”: Phylogenomics and annelid relationships, with emphasis on meiofaunal taxa.” Molecular Biology and Evolution, efirst Myzostomida (images Summers et al)EV Nautilus: Riftia Semenov: Terebellidae Annelida latest phylogeny “… it is now well accepted that Annelida includes many taxa formerly considered different phyla or with supposed affiliations with other animal groups, such as Sipuncula, Echiura, Pogonophora and Vestimentifera, Myzostomida, or Diurodrilida (Struck et al. -
Spatial Variation in the Reproductive Biology of Paralvinella Palmiformis (Polychaeta: Alvinellidae) from a Vent Field on the Juan De Fuca Ridge
MARINE ECOLOGY PROGRESS SERIES Vol. 255: 171–181, 2003 Published June 24 Mar Ecol Prog Ser Spatial variation in the reproductive biology of Paralvinella palmiformis (Polychaeta: Alvinellidae) from a vent field on the Juan de Fuca Ridge Jonathan T. P. Copley1,*, Paul A. Tyler 1, Cindy L. Van Dover 2, Steven J. Philp1 1School of Ocean and Earth Science, Southampton Oceanography Centre, University of Southampton, European Way, Southampton SO14 3ZH, United Kingdom 2Biology Department, College of William & Mary, Williamsburg, Virginia 23187, USA ABSTRACT: The microdistribution and dynamics of deep-sea hydrothermal vent communities often reflect the extreme heterogeneity of their environment. Here we present an assessment of spatial variation in the reproductive development of the alvinellid polychaete Paralvinella palmiformis at the High Rise vent field (Endeavour Segment, Juan de Fuca Ridge, NE Pacific). Samples collected from different locations across the vent field suggest patchy reproductive development for this species. Males and females from several locations contained few or no developing gametes, while gametes were abundant in samples collected at the same time from other locations. Samples lacking gametes were distinguished by body size-frequency distributions with peaks at smaller sizes and the presence or absence of other fauna consistent with early stage assemblages in a successional mosaic model previously proposed for Endeavour Segment communities. Where gametes were present, synchrony of reproductive development between females within samples and between samples was evident. Reproductive synchrony between pairs of samples initially declined over a 7 d interval between sam- ples, suggesting a rapid rate of reproductive development for P. palmiformis. Samples collected 1 mo apart, however, displayed similar frequency distributions of developing gametes. -
Six3 Demarcates the Anterior-Most Developing Brain Region In
Steinmetz et al. EvoDevo 2010, 1:14 http://www.evodevojournal.com/content/1/1/14 RESEARCH Open Access Six3 demarcates the anterior-most developing brain region in bilaterian animals Patrick RH Steinmetz1,6†, Rolf Urbach2†, Nico Posnien3,7, Joakim Eriksson4,8, Roman P Kostyuchenko5, Carlo Brena4, Keren Guy1, Michael Akam4*, Gregor Bucher3*, Detlev Arendt1* Abstract Background: The heads of annelids (earthworms, polychaetes, and others) and arthropods (insects, myriapods, spiders, and others) and the arthropod-related onychophorans (velvet worms) show similar brain architecture and for this reason have long been considered homologous. However, this view is challenged by the ‘new phylogeny’ placing arthropods and annelids into distinct superphyla, Ecdysozoa and Lophotrochozoa, together with many other phyla lacking elaborate heads or brains. To compare the organisation of annelid and arthropod heads and brains at the molecular level, we investigated head regionalisation genes in various groups. Regionalisation genes subdivide developing animals into molecular regions and can be used to align head regions between remote animal phyla. Results: We find that in the marine annelid Platynereis dumerilii, expression of the homeobox gene six3 defines the apical region of the larval body, peripherally overlapping the equatorial otx+ expression. The six3+ and otx+ regions thus define the developing head in anterior-to-posterior sequence. In another annelid, the earthworm Pristina, as well as in the onychophoran Euperipatoides, the centipede Strigamia and the insects Tribolium and Drosophila,asix3/optix+ region likewise demarcates the tip of the developing animal, followed by a more posterior otx/otd+ region. Identification of six3+ head neuroectoderm in Drosophila reveals that this region gives rise to median neurosecretory brain parts, as is also the case in annelids. -
Identification Guide to the Planktonic Polychaete Larvae Around the Island of Helgoland (German Bight)
HELGOL.~NDER MEERESUNTERSUCHUNGEN Helgol/inder Meeresunters. 48, 1-58 (1994) Identification guide to the planktonic polychaete larvae around the island of Helgoland (German Bight) S. Plate* & E. Husemann* * Biologische Anstalt Helgoland (Meeresstation); D-27483 Helgoland, Federal Republic of Germany ABSTRACT: The purpose of this work is to provide the means of identifying the planktonic larvae of the polychaete species appearing in the plankton around the island of Helgoland (North Sea). During a three-year survey in this area, the larvae of 54 species out of 24 families belonging to the orders Orbiniida, Spionida, Capitelhda, Phyllodocida, Oweniida, Terebelhda, Sabelhda and the former Archiannelida have been recorded. Illustrated keys to the families, genera and species are presented. To facilitate the identification, additional descriptions and information about the seasonal appearance of the species are given. INTRODUCTION More than 13 000 species of polychaetous annelids take part in the marine benthos communities worldwide. Their distribution, species composition and population density are monitored within various benthos surveys. For the North Sea, especially the German Bight and the Wadden Sea, much information about the benthic polychaete fauna is available (Caspers, 1950; Stripp, 1969; DSrjes, 1977; Rachor & Gerlach, 1978; Gillandt, 1979; Salzwedel et al., 1985; Rachor, 1990; Bosselmann, 1991; Kr6ncke, 1991). In contrast, the holoplanktonic polychaete species and the meroplanktonic polychaete larvae, which are only part of the plankton during a more or less expanded phase of their ontogenesis, have never received much attention. Meroplanktonic polychaete larvae are seldomly recorded during studies monitoring the North Sea plankton (Smidt, 1951; Giere, 1968; Fransz, 1981; Bosselmann, 1989; Belgrano et al., 1990). -
Clustered Brachiopod Hox Genes Are Not Expressed Collinearly and Are
Clustered brachiopod Hox genes are not expressed PNAS PLUS collinearly and are associated with lophotrochozoan novelties Sabrina M. Schiemanna,1, José M. Martín-Durána,1, Aina Børvea, Bruno C. Vellutinia, Yale J. Passamaneckb, and Andreas Hejnol1,a,2 aSars International Centre for Marine Molecular Biology, University of Bergen, Bergen 5006, Norway and bKewalo Marine Laboratory, Pacific Biosciences Research Center, University of Hawaii, Honolulu, HI 96822 Edited by Sean B. Carroll, Howard Hughes Medical Institute and University of Wisconsin–Madison, Madison, WI, and approved January 19, 2017 (received for review August 30, 2016) Temporal collinearity is often considered the main force preserving viding spatial information (29). They also are involved in Hox gene clusters in animal genomes. Studies that combine patterning different tissues (30), and often have been recruited genomic and gene expression data are scarce, however, particularly for the evolution and development of novel morphological traits, in invertebrates like the Lophotrochozoa. As a result, the temporal such as vertebrate limbs (31, 32), cephalopod funnels and arms collinearity hypothesis is currently built on poorly supported foun- (28), and beetle horns (33). dations. Here we characterize the complement, cluster, and expres- Thus, it is not surprising that Hox genes show diverse ar- sion of Hox genes in two brachiopod species, Terebratalia transversa rangements regarding their genomic organization and expression and Novocrania anomala. T. transversa has a split cluster with 10 profiles in the Spiralia (34), a major animal clade that includes lab pb Hox3 Dfd Scr Lox5 Antp Lox4 Post2 Post1 genes ( , , , , , , , , ,and ), highly disparate developmental strategies and body organizations N. anomala Post1 whereas has 9 genes (apparently missing ). -
The Thermal Limits to Life on Earth
International Journal of Astrobiology 13 (2): 141–154 (2014) doi:10.1017/S1473550413000438 © Cambridge University Press 2014. The online version of this article is published within an Open Access environment subject to the conditions of the Creative Commons Attribution licence http://creativecommons.org/licenses/by/3.0/. The thermal limits to life on Earth Andrew Clarke1,2 1British Antarctic Survey, Cambridge, UK 2School of Environmental Sciences, University of East Anglia, Norwich, UK e-mail: [email protected] Abstract: Living organisms on Earth are characterized by three necessary features: a set of internal instructions encoded in DNA (software), a suite of proteins and associated macromolecules providing a boundary and internal structure (hardware), and a flux of energy. In addition, they replicate themselves through reproduction, a process that renders evolutionary change inevitable in a resource-limited world. Temperature has a profound effect on all of these features, and yet life is sufficiently adaptable to be found almost everywhere water is liquid. The thermal limits to survival are well documented for many types of organisms, but the thermal limits to completion of the life cycle are much more difficult to establish, especially for organisms that inhabit thermally variable environments. Current data suggest that the thermal limits to completion of the life cycle differ between the three major domains of life, bacteria, archaea and eukaryotes. At the very highest temperatures only archaea are found with the current high-temperature limit for growth being 122 °C. Bacteria can grow up to 100 °C, but no eukaryote appears to be able to complete its life cycle above *60 °C and most not above 40 °C.