Alvinella Pompejana (Annelida)
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Diversity of Bacteria and Archaea in the Deep-Sea Low-Temperature Hydrothermal Sulfide Chimney of the Northeastern Pacific Ocean
African Journal of Biotechnology Vol. 11(2), pp. 337-345, 5 January, 2012 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB11.2692 ISSN 1684–5315 © 2012 Academic Journals Full Length Research Paper Diversity of bacteria and archaea in the deep-sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean Xia Ding1*, Xiao-Jue Peng1#, Xiao-Tong Peng2 and Huai-Yang Zhou3 1College of Life Sciences and Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, China. 2Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China. 3National Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, China. Accepted 4 November, 2011 Our knowledge of the diversity and role of hydrothermal vents microorganisms has considerably expanded over the past decade, while little is known about the diversity of microorganisms in low-temperature hydrothermal sulfide chimney. In this study, denaturing gradient gel electrophoresis (DGGE) and 16S rDNA sequencing were used to examine the abundance and diversity of microorganisms from the exterior to the interior of the deep sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean. DGGE profiles revealed that both bacteria and archaea could be examined in all three zones of the chimney wall and the compositions of microbial communities within different zones were vastly different. Overall, for archaea, cell abundance was greatest in the outermost zone of the chimney wall. For bacteria, there was no significant difference in cell abundance among three zones. In addition, phylogenetic analysis revealed that Verrucomicrobia and Deltaproteobacteria were the predominant bacterial members in exterior zone, beta Proteobacteria were the dominant members in middle zone, and Bacillus were the abundant microorganisms in interior zone. -
Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment
fmars-08-705053 July 14, 2021 Time: 18:29 # 1 REVIEW published: 20 July 2021 doi: 10.3389/fmars.2021.705053 Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment Christopher J. Freeman1*, Cole G. Easson2, Cara L. Fiore3 and Robert W. Thacker4,5 1 Department of Biology, College of Charleston, Charleston, SC, United States, 2 Department of Biology, Middle Tennessee State University, Murfreesboro, TN, United States, 3 Department of Biology, Appalachian State University, Boone, NC, United States, 4 Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, United States, 5 Smithsonian Tropical Research Institute, Panama City, Panama Marine sponges have been successful in their expansion across diverse ecological niches around the globe. Pioneering work attributed this success to both a well- developed aquiferous system that allowed for efficient filter feeding on suspended organic matter and the presence of microbial symbionts that can supplement host Edited by: heterotrophic feeding with photosynthate or dissolved organic carbon. We now know Aldo Cróquer, The Nature Conservancy, that sponge-microbe interactions are host-specific, highly nuanced, and provide diverse Dominican Republic nutritional benefits to the host sponge. Despite these advances in the field, many current Reviewed by: hypotheses pertaining to the evolution of these interactions are overly generalized; these Ryan McMinds, University of South Florida, over-simplifications limit our understanding of the evolutionary processes shaping these United States symbioses and how they contribute to the ecological success of sponges on modern Alejandra Hernandez-Agreda, coral reefs. To highlight the current state of knowledge in this field, we start with seminal California Academy of Sciences, United States papers and review how contemporary work using higher resolution techniques has Torsten Thomas, both complemented and challenged their early hypotheses. -
Tube Worm Riftia Pachyptila to Severe Hypoxia
l MARINE ECOLOGY PROGRESS SERIES Vol. 174: 151-158,1998 Published November 26 Mar Ecol Prog Ser Metabolic responses of the hydrothermal vent tube worm Riftia pachyptila to severe hypoxia Cordelia ~rndt',~.*,Doris Schiedek2,Horst Felbeckl 'University of California San Diego, Scripps Institution of Oceanography. La Jolla. California 92093-0202. USA '~alticSea Research Institute at the University of Rostock, Seestrasse 15. D-181 19 Rostock-Warnemuende. Germany ABSTRACT: The metabolic capabilit~esof the hydrothermal vent tube worm Riftia pachyptila to toler- ate short- and long-term exposure to hypoxia were investigated After incubating specimens under anaerobic conditions the metabolic changes in body fluids and tissues were analyzed over time. The tube worms tolerated anoxic exposure up to 60 h. Prior to hypoxia the dicarboxylic acid, malate, was found in unusually high concentrations in the blood (up to 26 mM) and tissues (up to 5 pm01 g-' fresh wt). During hypoxia, most of the malate was degraded very quickly, while large quantities of succinate accumulated (blood: about 17 mM; tissues: about 13 pm01 g-l fresh wt). Volatile, short-chain fatty acids were apparently not excreted under these conditions. The storage compound, glycogen, was mainly found in the trophosome and appears to be utilized only during extended anaerobiosis. The succinate formed during hypoxia does not account for the use of malate and glycogen, which possibly indicates the presence of yet unidentified metabolic end products. Glutamate concentration in the trophosome decreased markedly durlng hypoxia, presumably due to a reduction in the autotrophic function of the symb~ontsduring hypoxia. In conclusion, R. pachyptila is phys~ologicallywell adapted to the oxygen fluctuations freq.uently occurring In the vent habitat. -
Microbial Interactions with Arsenite, Hydrogen and Sulfide In
MICROBIAL INTERACTIONS WITH ARSENITE, HYDROGEN AND SULFIDE IN AN ACID-SULFATE-CHLORIDE GEOTHERMAL SPRING by Seth D’Imperio A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Ecology and Environmental Sciences MONTANA STATE UNIVERSITY Bozeman, Montana April, 2008 ©COPYRIGHT by Seth D’Imperio 2008 All Rights Reserved ii APPROVAL of a dissertation submitted by Seth D’Imperio This dissertation has been read by each member of the dissertation committee and has been found to be satisfactory regarding content, English usage, format, citation, bibliographic style, and consistency, and is ready for submission to the Division of Graduate Education. Dr. Timothy R. McDermott Approved for the Department Land Resources and Environmental Science Dr. Jon M. Wraith Approved for the Division of Graduate Education Dr. Carl A. Fox iii STATEMENT OF PERMISSION TO USE In presenting this dissertation in partial fulfillment of the requirements for a doctoral degree at Montana State University, I agree that the Library shall make it available to borrowers under rules of the Library. I further agree that copying of this dissertation is allowable only for scholarly purposes, consistent with “fair use” as prescribed in the U.S. Copyright Law. Requests for extensive copying or reproduction of this dissertation should be referred to ProQuest Information and Learning, 300 North Zeeb Road, Ann Arbor, Michigan 48106, to whom I have granted “the exclusive right to reproduce and distribute my dissertation in and from microform along with the non- exclusive right to reproduce and distribute my abstract in any format in whole or in part.” Seth D’Imperio April 2008 iv ACKNOWLEDGEMENTS Firstly, I would like to thank Dr. -
Classification
Science Classification Pupil Workbook Year 5 Unit 5 Name: 2 3 Existing Knowledge: Why do we put living things into different groups and what are the groups that we can separate them into? You can think about the animals in the picture and all the others that you know. 4 Session 1: How do we classify animals with a backbone? Key Knowledge Key Vocabulary Animals known as vertebrates have a spinal column. Vertebrates Some vertebrates are warm-blooded meaning that they Species maintain a consistent body temperature. Some are cold- Habitat blooded, meaning they need to move around to warm up or cool down. Spinal column Vertebrates are split into five main groups known as Warm-blooded/Cold- mammals, amphibians, reptiles, birds and fish. blooded Task: Look at the picture here and think about the different groups that each animal is part of. How is each different to the others and which other animals share similar characteristics? Write your ideas here: __________________________ __________________________ __________________________ __________________________ __________________________ __________________________ ____________________________________________________ ____________________________________________________ ____________________________________________________ ____________________________________________________ ____________________________________________________ 5 How do we classify animals with a backbone? Vertebrates are the most advanced organisms on Earth. The traits that make all of the animals in this group special are -
Role of Chemolithoautotrophic Microorganisms Involved in Nitrogen and Sulfur Cycling in Coastal Marine Sediments
Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments Yvonne Antonia Lipsewers THIS RESEARCH WAS FINANCIALLY SUPPORTED BY DARWIN CENTER FOR BIOGEOSCIENCES NIOZ – ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH ISBN: 978-90-6266-492-4 Cover photos: S. Rampen, L. Villanueva, M. van der Meer Printed by Ipskamp Printing, The Netherlands Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments De rol van chemolithoautotrofe micro-organismen die deelnemen in de stikstof- en zwavelcyclus in mariene kustsedimenten (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. G.J. van der Zwaan, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op dinsdag 5 december 2017 des ochtends te 10.30 uur door Yvonne Antonia Lipsewers geboren op 18 juli 1977 te Salzkotten, Duitsland Promotor: Prof. dr. ir. J.S. Sinninghe Damsté Copromotor: Dr. L. Villanueva „Hinterher ist man immer schlauer…“ Für meine Familie Table of contents Chapter 1 – Introduction .....................................................................................................1 Chapter 2 – Seasonality and depth distribution of the abundance and activity of am- monia oxidizing microorganisms in marine coastal sediments (North Sea) ..........23 Chapter 3 – Lack of 13C-label incorporation suggests low turnover rates of thaumar- chaeal intact -
Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk University of Southampton Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps PhD Dissertation submitted by Ana Hil´ario to the Graduate School of the National Oceanography Centre, Southampton in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 2005 Graduate School of the National Oceanography Centre, Southampton This PhD dissertation by Ana Hil´ario has been produced under the supervision of the following persons Supervisors Prof. Paul Tyler and Dr Craig Young Chair of Advisory Panel Dr Martin Sheader Member of Advisory Panel Dr Jonathan Copley I hereby declare that no part of this thesis has been submitted for a degree to the University of Southampton, or any other University, at any time previously. The material included is the work of the author, except where expressly stated. -
The Metabolic Demands of Endosymbiotic Chemoautotrophic Metabolism on Host Physiological Capacities
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Harvard University - DASH The metabolic demands of endosymbiotic chemoautotrophic metabolism on host physiological capacities The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. Citation Childress, J. J., and P. R. Girguis. 2011. “The Metabolic Demands of Endosymbiotic Chemoautotrophic Metabolism on Host Physiological Capacities.” Journal of Experimental Biology 214, no. 2: 312–325. Published Version doi:10.1242/jeb.049023 Accessed February 16, 2015 7:23:35 PM EST Citable Link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12763600 Terms of Use This article was downloaded from Harvard University's DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP (Article begins on next page) 1 The metabolic demands of endosymbiotic chemoautotrophic metabolism on host 2 physiological capacities 3 4 J. J. Childress1* and P. R. Girguis2 5 1Department of Ecology, Evolution and Marine Biology, University of California, Santa 6 Barbara, CA 93106, USA, 2Department of Organismic and Evolutionary Biology, 7 Harvard University, Cambridge, MA 02138, USA 8 *Author for correspondence ([email protected]) 9 Running Title: Chemoautotrophic Metabolism 10 11 SUMMARY 12 While chemoautotrophic endosymbioses of hydrothermal vents and other 13 reducing environments have been well studied, little attention has been paid to the 14 magnitude of the metabolic demands placed upon the host by symbiont metabolism, 15 and the adaptations necessary to meet such demands. -
Six3 Demarcates the Anterior-Most Developing Brain Region In
Steinmetz et al. EvoDevo 2010, 1:14 http://www.evodevojournal.com/content/1/1/14 RESEARCH Open Access Six3 demarcates the anterior-most developing brain region in bilaterian animals Patrick RH Steinmetz1,6†, Rolf Urbach2†, Nico Posnien3,7, Joakim Eriksson4,8, Roman P Kostyuchenko5, Carlo Brena4, Keren Guy1, Michael Akam4*, Gregor Bucher3*, Detlev Arendt1* Abstract Background: The heads of annelids (earthworms, polychaetes, and others) and arthropods (insects, myriapods, spiders, and others) and the arthropod-related onychophorans (velvet worms) show similar brain architecture and for this reason have long been considered homologous. However, this view is challenged by the ‘new phylogeny’ placing arthropods and annelids into distinct superphyla, Ecdysozoa and Lophotrochozoa, together with many other phyla lacking elaborate heads or brains. To compare the organisation of annelid and arthropod heads and brains at the molecular level, we investigated head regionalisation genes in various groups. Regionalisation genes subdivide developing animals into molecular regions and can be used to align head regions between remote animal phyla. Results: We find that in the marine annelid Platynereis dumerilii, expression of the homeobox gene six3 defines the apical region of the larval body, peripherally overlapping the equatorial otx+ expression. The six3+ and otx+ regions thus define the developing head in anterior-to-posterior sequence. In another annelid, the earthworm Pristina, as well as in the onychophoran Euperipatoides, the centipede Strigamia and the insects Tribolium and Drosophila,asix3/optix+ region likewise demarcates the tip of the developing animal, followed by a more posterior otx/otd+ region. Identification of six3+ head neuroectoderm in Drosophila reveals that this region gives rise to median neurosecretory brain parts, as is also the case in annelids. -
Clustered Brachiopod Hox Genes Are Not Expressed Collinearly and Are
Clustered brachiopod Hox genes are not expressed PNAS PLUS collinearly and are associated with lophotrochozoan novelties Sabrina M. Schiemanna,1, José M. Martín-Durána,1, Aina Børvea, Bruno C. Vellutinia, Yale J. Passamaneckb, and Andreas Hejnol1,a,2 aSars International Centre for Marine Molecular Biology, University of Bergen, Bergen 5006, Norway and bKewalo Marine Laboratory, Pacific Biosciences Research Center, University of Hawaii, Honolulu, HI 96822 Edited by Sean B. Carroll, Howard Hughes Medical Institute and University of Wisconsin–Madison, Madison, WI, and approved January 19, 2017 (received for review August 30, 2016) Temporal collinearity is often considered the main force preserving viding spatial information (29). They also are involved in Hox gene clusters in animal genomes. Studies that combine patterning different tissues (30), and often have been recruited genomic and gene expression data are scarce, however, particularly for the evolution and development of novel morphological traits, in invertebrates like the Lophotrochozoa. As a result, the temporal such as vertebrate limbs (31, 32), cephalopod funnels and arms collinearity hypothesis is currently built on poorly supported foun- (28), and beetle horns (33). dations. Here we characterize the complement, cluster, and expres- Thus, it is not surprising that Hox genes show diverse ar- sion of Hox genes in two brachiopod species, Terebratalia transversa rangements regarding their genomic organization and expression and Novocrania anomala. T. transversa has a split cluster with 10 profiles in the Spiralia (34), a major animal clade that includes lab pb Hox3 Dfd Scr Lox5 Antp Lox4 Post2 Post1 genes ( , , , , , , , , ,and ), highly disparate developmental strategies and body organizations N. anomala Post1 whereas has 9 genes (apparently missing ). -
Biodiversity and Biogeography of Hydrothermal Vent Species Thirty Years of Discovery and Investigations
This article has been published inOceanography , Volume 20, Number 1, a quarterly journal of The Oceanography Soci- S P E C I A L I ss U E F E AT U R E ety. Copyright 2007 by The Oceanography Society. All rights reserved. Permission is granted to copy this article for use in teaching and research. Republication, systemmatic reproduction, or collective redistirbution of any portion of this article by photocopy machine, reposting, or other means is permitted only with the approval of The Oceanography Society. Send all correspondence to: [email protected] or Th e Oceanography Society, PO Box 1931, Rockville, MD 20849-1931, USA. Biodiversity and Biogeography of Hydrothermal Vent Species Thirty Years of Discovery and Investigations B Y EvA R AMIREZ- L LO D RA, On the Seaoor, Dierent Species T IMOTH Y M . S H A N K , A nd Thrive in Dierent Regions C HRI S TO P H E R R . G E R M A N Soon after animal communities were discovered around seafl oor hydrothermal vents in 1977, sci- entists found that vents in various regions are populated by distinct animal species. Scien- Shallow Atlantic vents (800-1700-meter depths) tists have been sorting clues to explain how support dense clusters of mussels The discovery of hydrothermal vents and the unique, often endem- seafl oor populations are related and how on black smoker chimneys. they evolved and diverged over Earth’s • ic fauna that inhabit them represents one of the most extraordinary history. Scientists today recognize dis- scientific discoveries of the latter twentieth century. -
The Thermal Limits to Life on Earth
International Journal of Astrobiology 13 (2): 141–154 (2014) doi:10.1017/S1473550413000438 © Cambridge University Press 2014. The online version of this article is published within an Open Access environment subject to the conditions of the Creative Commons Attribution licence http://creativecommons.org/licenses/by/3.0/. The thermal limits to life on Earth Andrew Clarke1,2 1British Antarctic Survey, Cambridge, UK 2School of Environmental Sciences, University of East Anglia, Norwich, UK e-mail: [email protected] Abstract: Living organisms on Earth are characterized by three necessary features: a set of internal instructions encoded in DNA (software), a suite of proteins and associated macromolecules providing a boundary and internal structure (hardware), and a flux of energy. In addition, they replicate themselves through reproduction, a process that renders evolutionary change inevitable in a resource-limited world. Temperature has a profound effect on all of these features, and yet life is sufficiently adaptable to be found almost everywhere water is liquid. The thermal limits to survival are well documented for many types of organisms, but the thermal limits to completion of the life cycle are much more difficult to establish, especially for organisms that inhabit thermally variable environments. Current data suggest that the thermal limits to completion of the life cycle differ between the three major domains of life, bacteria, archaea and eukaryotes. At the very highest temperatures only archaea are found with the current high-temperature limit for growth being 122 °C. Bacteria can grow up to 100 °C, but no eukaryote appears to be able to complete its life cycle above *60 °C and most not above 40 °C.