Tube Worm Riftia Pachyptila to Severe Hypoxia
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Diversity of Bacteria and Archaea in the Deep-Sea Low-Temperature Hydrothermal Sulfide Chimney of the Northeastern Pacific Ocean
African Journal of Biotechnology Vol. 11(2), pp. 337-345, 5 January, 2012 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB11.2692 ISSN 1684–5315 © 2012 Academic Journals Full Length Research Paper Diversity of bacteria and archaea in the deep-sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean Xia Ding1*, Xiao-Jue Peng1#, Xiao-Tong Peng2 and Huai-Yang Zhou3 1College of Life Sciences and Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, China. 2Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China. 3National Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, China. Accepted 4 November, 2011 Our knowledge of the diversity and role of hydrothermal vents microorganisms has considerably expanded over the past decade, while little is known about the diversity of microorganisms in low-temperature hydrothermal sulfide chimney. In this study, denaturing gradient gel electrophoresis (DGGE) and 16S rDNA sequencing were used to examine the abundance and diversity of microorganisms from the exterior to the interior of the deep sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean. DGGE profiles revealed that both bacteria and archaea could be examined in all three zones of the chimney wall and the compositions of microbial communities within different zones were vastly different. Overall, for archaea, cell abundance was greatest in the outermost zone of the chimney wall. For bacteria, there was no significant difference in cell abundance among three zones. In addition, phylogenetic analysis revealed that Verrucomicrobia and Deltaproteobacteria were the predominant bacterial members in exterior zone, beta Proteobacteria were the dominant members in middle zone, and Bacillus were the abundant microorganisms in interior zone. -
Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment
fmars-08-705053 July 14, 2021 Time: 18:29 # 1 REVIEW published: 20 July 2021 doi: 10.3389/fmars.2021.705053 Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment Christopher J. Freeman1*, Cole G. Easson2, Cara L. Fiore3 and Robert W. Thacker4,5 1 Department of Biology, College of Charleston, Charleston, SC, United States, 2 Department of Biology, Middle Tennessee State University, Murfreesboro, TN, United States, 3 Department of Biology, Appalachian State University, Boone, NC, United States, 4 Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, United States, 5 Smithsonian Tropical Research Institute, Panama City, Panama Marine sponges have been successful in their expansion across diverse ecological niches around the globe. Pioneering work attributed this success to both a well- developed aquiferous system that allowed for efficient filter feeding on suspended organic matter and the presence of microbial symbionts that can supplement host Edited by: heterotrophic feeding with photosynthate or dissolved organic carbon. We now know Aldo Cróquer, The Nature Conservancy, that sponge-microbe interactions are host-specific, highly nuanced, and provide diverse Dominican Republic nutritional benefits to the host sponge. Despite these advances in the field, many current Reviewed by: hypotheses pertaining to the evolution of these interactions are overly generalized; these Ryan McMinds, University of South Florida, over-simplifications limit our understanding of the evolutionary processes shaping these United States symbioses and how they contribute to the ecological success of sponges on modern Alejandra Hernandez-Agreda, coral reefs. To highlight the current state of knowledge in this field, we start with seminal California Academy of Sciences, United States papers and review how contemporary work using higher resolution techniques has Torsten Thomas, both complemented and challenged their early hypotheses. -
Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk University of Southampton Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps PhD Dissertation submitted by Ana Hil´ario to the Graduate School of the National Oceanography Centre, Southampton in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 2005 Graduate School of the National Oceanography Centre, Southampton This PhD dissertation by Ana Hil´ario has been produced under the supervision of the following persons Supervisors Prof. Paul Tyler and Dr Craig Young Chair of Advisory Panel Dr Martin Sheader Member of Advisory Panel Dr Jonathan Copley I hereby declare that no part of this thesis has been submitted for a degree to the University of Southampton, or any other University, at any time previously. The material included is the work of the author, except where expressly stated. -
The Metabolic Demands of Endosymbiotic Chemoautotrophic Metabolism on Host Physiological Capacities
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Harvard University - DASH The metabolic demands of endosymbiotic chemoautotrophic metabolism on host physiological capacities The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. Citation Childress, J. J., and P. R. Girguis. 2011. “The Metabolic Demands of Endosymbiotic Chemoautotrophic Metabolism on Host Physiological Capacities.” Journal of Experimental Biology 214, no. 2: 312–325. Published Version doi:10.1242/jeb.049023 Accessed February 16, 2015 7:23:35 PM EST Citable Link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12763600 Terms of Use This article was downloaded from Harvard University's DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP (Article begins on next page) 1 The metabolic demands of endosymbiotic chemoautotrophic metabolism on host 2 physiological capacities 3 4 J. J. Childress1* and P. R. Girguis2 5 1Department of Ecology, Evolution and Marine Biology, University of California, Santa 6 Barbara, CA 93106, USA, 2Department of Organismic and Evolutionary Biology, 7 Harvard University, Cambridge, MA 02138, USA 8 *Author for correspondence ([email protected]) 9 Running Title: Chemoautotrophic Metabolism 10 11 SUMMARY 12 While chemoautotrophic endosymbioses of hydrothermal vents and other 13 reducing environments have been well studied, little attention has been paid to the 14 magnitude of the metabolic demands placed upon the host by symbiont metabolism, 15 and the adaptations necessary to meet such demands. -
Nanosims and Tissue Autoradiography Reveal Symbiont Carbon fixation and Organic Carbon Transfer to Giant Ciliate Host
The ISME Journal (2018) 12:714–727 https://doi.org/10.1038/s41396-018-0069-1 ARTICLE NanoSIMS and tissue autoradiography reveal symbiont carbon fixation and organic carbon transfer to giant ciliate host 1 2 1 3 4 Jean-Marie Volland ● Arno Schintlmeister ● Helena Zambalos ● Siegfried Reipert ● Patricija Mozetič ● 1 4 2 1 Salvador Espada-Hinojosa ● Valentina Turk ● Michael Wagner ● Monika Bright Received: 23 February 2017 / Revised: 3 October 2017 / Accepted: 9 October 2017 / Published online: 9 February 2018 © The Author(s) 2018. This article is published with open access Abstract The giant colonial ciliate Zoothamnium niveum harbors a monolayer of the gammaproteobacteria Cand. Thiobios zoothamnicoli on its outer surface. Cultivation experiments revealed maximal growth and survival under steady flow of high oxygen and low sulfide concentrations. We aimed at directly demonstrating the sulfur-oxidizing, chemoautotrophic nature of the symbionts and at investigating putative carbon transfer from the symbiont to the ciliate host. We performed pulse-chase incubations with 14C- and 13C-labeled bicarbonate under varying environmental conditions. A combination of tissue autoradiography and nanoscale secondary ion mass spectrometry coupled with transmission electron microscopy was used to fi 1234567890();,: follow the fate of the radioactive and stable isotopes of carbon, respectively. We show that symbiont cells x substantial amounts of inorganic carbon in the presence of sulfide, but also (to a lesser degree) in the absence of sulfide by utilizing internally stored sulfur. Isotope labeling patterns point to translocation of organic carbon to the host through both release of these compounds and digestion of symbiont cells. The latter mechanism is also supported by ultracytochemical detection of acid phosphatase in lysosomes and in food vacuoles of ciliate cells. -
Genomic Adaptations to Chemosymbiosis in the Deep-Sea Seep-Dwelling Tubeworm Lamellibrachia Luymesi Yuanning Li1,2* , Michael G
Li et al. BMC Biology (2019) 17:91 https://doi.org/10.1186/s12915-019-0713-x RESEARCH ARTICLE Open Access Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi Yuanning Li1,2* , Michael G. Tassia1, Damien S. Waits1, Viktoria E. Bogantes1, Kyle T. David1 and Kenneth M. Halanych1* Abstract Background: Symbiotic relationships between microbes and their hosts are widespread and diverse, often providing protection or nutrients, and may be either obligate or facultative. However, the genetic mechanisms allowing organisms to maintain host-symbiont associations at the molecular level are still mostly unknown, and in the case of bacterial-animal associations, most genetic studies have focused on adaptations and mechanisms of the bacterial partner. The gutless tubeworms (Siboglinidae, Annelida) are obligate hosts of chemoautotrophic endosymbionts (except for Osedax which houses heterotrophic Oceanospirillales), which rely on the sulfide- oxidizing symbionts for nutrition and growth. Whereas several siboglinid endosymbiont genomes have been characterized, genomes of hosts and their adaptations to this symbiosis remain unexplored. Results: Here, we present and characterize adaptations of the cold seep-dwelling tubeworm Lamellibrachia luymesi, one of the longest-lived solitary invertebrates. We sequenced the worm’s ~ 688-Mb haploid genome with an overall completeness of ~ 95% and discovered that L. luymesi lacks many genes essential in amino acid biosynthesis, obligating them to products provided by symbionts. Interestingly, the host is known to carry hydrogen sulfide to thiotrophic endosymbionts using hemoglobin. We also found an expansion of hemoglobin B1 genes, many of which possess a free cysteine residue which is hypothesized to function in sulfide binding. -
Biodiversity and Biogeography of Hydrothermal Vent Species Thirty Years of Discovery and Investigations
This article has been published inOceanography , Volume 20, Number 1, a quarterly journal of The Oceanography Soci- S P E C I A L I ss U E F E AT U R E ety. Copyright 2007 by The Oceanography Society. All rights reserved. Permission is granted to copy this article for use in teaching and research. Republication, systemmatic reproduction, or collective redistirbution of any portion of this article by photocopy machine, reposting, or other means is permitted only with the approval of The Oceanography Society. Send all correspondence to: [email protected] or Th e Oceanography Society, PO Box 1931, Rockville, MD 20849-1931, USA. Biodiversity and Biogeography of Hydrothermal Vent Species Thirty Years of Discovery and Investigations B Y EvA R AMIREZ- L LO D RA, On the Seaoor, Dierent Species T IMOTH Y M . S H A N K , A nd Thrive in Dierent Regions C HRI S TO P H E R R . G E R M A N Soon after animal communities were discovered around seafl oor hydrothermal vents in 1977, sci- entists found that vents in various regions are populated by distinct animal species. Scien- Shallow Atlantic vents (800-1700-meter depths) tists have been sorting clues to explain how support dense clusters of mussels The discovery of hydrothermal vents and the unique, often endem- seafl oor populations are related and how on black smoker chimneys. they evolved and diverged over Earth’s • ic fauna that inhabit them represents one of the most extraordinary history. Scientists today recognize dis- scientific discoveries of the latter twentieth century. -
Chemosynthetic Symbiont with a Drastically Reduced Genome Serves As Primary Energy Storage in the Marine Flatworm Paracatenula
Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula Oliver Jäcklea, Brandon K. B. Seaha, Målin Tietjena, Nikolaus Leischa, Manuel Liebekea, Manuel Kleinerb,c, Jasmine S. Berga,d, and Harald R. Gruber-Vodickaa,1 aMax Planck Institute for Marine Microbiology, 28359 Bremen, Germany; bDepartment of Geoscience, University of Calgary, AB T2N 1N4, Canada; cDepartment of Plant & Microbial Biology, North Carolina State University, Raleigh, NC 27695; and dInstitut de Minéralogie, Physique des Matériaux et Cosmochimie, Université Pierre et Marie Curie, 75252 Paris Cedex 05, France Edited by Margaret J. McFall-Ngai, University of Hawaii at Manoa, Honolulu, HI, and approved March 1, 2019 (received for review November 7, 2018) Hosts of chemoautotrophic bacteria typically have much higher thrive in both free-living environmental and symbiotic states, it is biomass than their symbionts and consume symbiont cells for difficult to attribute their genomic features to either functions nutrition. In contrast to this, chemoautotrophic Candidatus Riegeria they provide to their host, or traits that are necessary for envi- symbionts in mouthless Paracatenula flatworms comprise up to ronmental survival or to both. half of the biomass of the consortium. Each species of Paracate- The smallest genomes of chemoautotrophic symbionts have nula harbors a specific Ca. Riegeria, and the endosymbionts have been observed for the gammaproteobacterial symbionts of ves- been vertically transmitted for at least 500 million years. Such icomyid clams that are directly transmitted between host genera- prolonged strict vertical transmission leads to streamlining of sym- tions (13, 14). Such strict vertical transmission leads to substantial biont genomes, and the retained physiological capacities reveal and ongoing genome reduction. -
Chemosynthesis: What It We Can Learn from Hydrothermal Vents
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Alvinella Pompejana (Annelida)
MARINE ECOLOGY - PROGRESS SERIES Vol. 34: 267-274, 1986 Published December 19 Mar. Ecol. Prog. Ser. Tubes of deep sea hydrothermal vent worms Riftia pachyptila (Vestimentif era) and Alvinella pompejana (Annelida) ' CNRS Centre de Biologie Cellulaire, 67 Rue Maurice Gunsbourg, 94200 Ivry sur Seine, France Department of Biological Sciences, University of Lancaster, Bailrigg. Lancaster LA1 4YQ. England ABSTRACT: The aim of this study was to compare the structure and chemistry of the dwelling tubes of 2 invertebrate species living close to deep sea hydrothermal vents at 12"48'N, 103'56'W and 2600 m depth and collected during April 1984. The Riftia pachyptila tube is formed of a chitin proteoglycan/ protein complex whereas the Alvinella pompejana tube is made from an unusually stable glycoprotein matrix containing a high level of elemental sulfur. The A. pompejana tube is physically and chemically more stable and encloses bacteria within the tube wall material. INTRODUCTION the submersible Cyana in April 1984 during the Biocy- arise cruise (12"48'N, 103O56'W). Tubes were pre- The Pompeii worm Alvinella pompejana, a poly- served in alcohol, or fixed in formol-saline, or simply chaetous annelid, and Riftia pachyptila, previously rinsed and air-dried. considered as pogonophoran but now placed in the Some pieces of tubes were post-fixed with osmium putative phylum Vestimentifera (Jones 1985), are tetroxide (1 O/O final concentration) and embedded in found at a depth of 2600 m around deep sea hydrother- Durcupan. Thin sections were stained with aqueous mal vents. R. pachyptila lives where the vent water uranyl acetate and lead citrate and examined using a (anoxic, rich in hydrogen sulphide, temperatures up to Phillips EM 201 TEM at the Centre de Biologie 15°C) mixes with surrounding seawater (oxygenated, Cellulaire, CNRS, Ivry (France). -
Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin
California State University, Monterey Bay Digital Commons @ CSUMB Capstone Projects and Master's Theses Capstone Projects and Master's Theses Summer 2020 Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin Kenji Jordi Soto California State University, Monterey Bay Follow this and additional works at: https://digitalcommons.csumb.edu/caps_thes_all Recommended Citation Soto, Kenji Jordi, "Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin" (2020). Capstone Projects and Master's Theses. 892. https://digitalcommons.csumb.edu/caps_thes_all/892 This Master's Thesis (Open Access) is brought to you for free and open access by the Capstone Projects and Master's Theses at Digital Commons @ CSUMB. It has been accepted for inclusion in Capstone Projects and Master's Theses by an authorized administrator of Digital Commons @ CSUMB. For more information, please contact [email protected]. HYDROTEHRMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _______________ A Thesis Presented to the Faculty of Moss Landing Marine Laboratories California State University Monterey Bay _______________ In Partial Fulfillment of the Requirements for the Degree Master of Science in Marine Science _______________ by Kenji Jordi Soto Spring 2020 CALIFORNIA STATE UNIVERSITY MONTEREY BAY The Undersigned Faculty Committee Approves the Thesis of Kenji Jordi Soto: HYDROTHERMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _____________________________________________ -
Physiological Homogeneity Among the Endosymbionts of Riftia Pachyptila and Tevnia Jerichonana Revealed by Proteogenomics
The ISME Journal (2012) 6, 766–776 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics Antje Gardebrecht1,2, Stephanie Markert2,3, Stefan M Sievert4, Horst Felbeck5, Andrea Thu¨ rmer6, Dirk Albrecht2,7, Antje Wollherr6, Johannes Kabisch2,3, Nadine Le Bris8,9, Ru¨ diger Lehmann6, Rolf Daniel6, Heiko Liesegang6, Michael Hecker2,3,7 and Thomas Schweder1,2,3 1Department of Pharmaceutical Biotechnology, Ernst-Moritz-Arndt-University, Greifswald, Germany; 2ZIK FunGene, Ernst-Moritz-Arndt-University, Greifswald, Germany; 3Institute of Marine Biotechnology, Greifswald, Germany; 4Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA; 5Marine Biology Research Division, Scripps Institution of Oceanography, San Diego, CA, USA; 6Go¨ttingen Genomics Laboratory, Georg-August-University, Go¨ttingen, Germany; 7Institute for Microbiology, Ernst-Moritz-Arndt-University, Greifswald, Germany; 8Benthic Ecogeochemistry Laboratory, Universite´ Pierre et Marie Curie, Banyuls-sur-Mer, France and 9Laboratoire Environnement Profond, Ifremer, Brest, France The two closely related deep-sea tubeworms Riftia pachyptila and Tevnia jerichonana both rely exclusively on a single species of sulfide-oxidizing endosymbiotic bacteria for their nutrition. They do, however, thrive in markedly different geochemical conditions. A detailed proteogenomic comparison of