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Cambridge University Press 978-0-521-87162-4 - Lichen Biology, Second Edition Edited by Thomas H. Nash Index More information Taxon index (excluding animals and vascular plants) Absconditella 347 Agyrium 345 Anaptychia 349 Acanthothecis 346 Agyrium rufum 330 Anaptychia ciliaris 50 Acarospora 42, 247, 345 Ahtia 348 Ancistrospora 344 Acarospora clauzadeana 238 Ahtiana 348 Anema 345 Acarospora smaragdula 247 Ahtiana pallidula 317 Anema nummularium 15, Acarospora rugulosa 247 Ainoa 347 43–4 Acarosporaceae 345 Alectoria 132, 332, 348 Anema progidulum 330 Acarosporales 28, 345 Alectoria nigricans 221, 321 Anisomeridium 351 Acarosporomycetidae 28, Alectoria ochroleuca 84 Anomalographis 346 341, 345 Alectoria sarmentosa 194–5 Anthracocarpon 351 Achaetomium 105 Alternaria 105 Anthracothecium 351 Acolium 349 Allantoparmelia 332, 348 Anzia 25, 334, 348 Acrasiomycota 339 Almbornia 348 Anzia opuntiella 73 Acrocordia 351 Allocetraria 330, Anzina 62, 345 Acrocordia conoidea 41 332, 348 Anzina carneonivea 63, 330 Acroscyphus 349 Amandinea 349 Aphanopsidaceae 350 Actinomycetes 4 Amandinea coniops 59 Aphanopsis 350 Actinoplaca 346 Amandinea decedens 327 Aphyllophorales 61 Adelococcaceae 351 Amandinea punctata 317 Aplanocalenia 346 Adelolecia 348 Amastigomycota 340 Arctocetraria 348 Aderkomyces 323, 346 Amazonomyces 343 Arctomia 347 Agaricales 29, Amphorothecium 346 Arctomiaceae 347 61, 352 Ampliotrema 346 Arctoparmelia 129, 332, 348 Agaricomycetidae 352 Amygdalaria 54, 350 Arctoparmelia centrifuga Agonimia 323, 351 Amylora 345 265 Agonimia pacifica 324 Anabaena 218 Arctopeltis 347 Agyriaceae 345 Anamylopsora 346 Argopsis 349 Agyriales 28, 345 Anamylopsoraceae 346 Argopsis megalospora 317 462 © Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-87162-4 - Lichen Biology, Second Edition Edited by Thomas H. Nash Index More information Taxon index 463 Arthonia 323, 343 Aulaxina 323, 346 Bogoriella 351 Arthonia peraffinis 321 Auriculora 350 Boreoplaca 350 Arthonia tasmanica 325 Australiena 349 Botrydina 352 Arthoniaceae 343 Austrella 347 Botrydina vulgaris 17 Arthoniales 25, 28, 343 Austrella brunnea 318 Botryococcus braunii 21 Arthoniomycetidae 341, 343 Austroblastenia 349 Botryolepraria 350 Arthophacopsis 344 Austrolecia 349 Bouvetiella 350 Arthotheliopsis 346 Austropeltum 349 Brigantiaea 349 Arthothelium 343 Austropeltum glareosum 325 Brigantiaea ferruginea 18 Arthropyrenia 24, 57, 344 Awasthiella 351 Brigantiaea fuscolutea 321 Arthopyrenia halodytes 42, 44 Azotobacter 217 Brigantiaea lobulata 321 Arthopyrenia kelpii 18 Brigantiaea phaeomma 319 Arthopyreniaceae 25, 344 Bacidia 317, 348 Brigantiaeaceae 349 Arthrorhaphidaceae 344, 347 Bacidina 348 Brodoa 332, 348 Arthrorhaphis 344, 347 Bacidiopsora 348 Bryocaulon 348 Arthrorhaphis aeruginosa Bactrospora 323, 344 Bryodina 347 258 Bactrospora arthonioides 325 Bryogomphus 348 Arthrorhaphis alpina 321–2 Bactrospora homalotropa 327 Bryonora 347 Arthrorhaphis citrinella Bactrospora metabola 321 Bryonora castanea 321 321–2 Badimia 348 Bryophagus 346 Arthrorhaphis citrinella var. Badimia pollilensis 62 Bryoria 48, 291, 348 catolechioides 325 Badimiella 348 Bryoria austromontana 319 Arthrosporum 348 Badimiella pteridophylla 319 Buellia 349 Asahinea 332, 348 Baeomyces 46, 347 Buellia crystallifera 330 Ascomycetes 4, 29 Baeomyces rufus 75, 100 Buellia frigida 175 Ascomycota 28, 150, 258, Baeomycetaceae 25, 347 Buellia griseovirens 317 339–40, 342, 352 Bagliettoa 351 Buellia leptocline 60 Ascomycotina 92 Bahianora 350 Buelliastrum 350 Aspergillus 30, 105 Bapalmuia 348 Bulborrhizina 348 Aspergillus nidulans 114–16 Bartlettiella 350 Bulbothrix 348 Aspergillus niger 114–15 Bartlettiella fragilis 319 Bunodophoron 325, 349 Aspergillus oryzae 114–15 Barubria 348 Bunodophoron flacidum 325 Aspergillus terreus 112 Basidiomycetes 4, 25, 65 Bunodophoron palmatum 318 Aspicilia 247, 346 Basidiomycota 28–9, Bunodophoron patagonicum Aspicilia desertorum 330 339–40, 351 319, 358 Aspiciliopsis 345 Bellemerea 350 Byssocaulon 344 Asterochloris 17, 82, 270 Bellemerea alpina 321 Byssolecania 348 Asterochloris phycobiontica 21 Bellemerella 351 Byssoloma 323, 348 Asterothyrium 323, 346 Belonia 346 Byssoloma adspersum 318 Astrothelium 351 Biatora 348 Byssoloma croceum 327 Athelia 39 Biatorella 350 Athelia arachnoidea Biatorellaceae 350 Calathaspis 348 38–9, 290 Biatoridium 350 Calenia 346 Atheliaceae 352 Biatoropsis usnearum 37, 39 Caleniopsis 346 © Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-87162-4 - Lichen Biology, Second Edition Edited by Thomas H. Nash Index More information 464 Taxon index Caliciaceae 39, 103, 349 Catillaria 317, 349 ‘‘Chlorella’’ trebouxioides 21 Caliciales 2, 25, 103 Catillaria contristans 321 Chlorella vulgaris 21 Calicium 317, 349 Catillariaceae 349 Chlorellales 21, 75 Calopadia 348 Catinaria 348 Chlorophyceae 17–19, 21–2 Calopadia subcoerulescens Catolechia 349 Chlorophyta 9, 17, 21–2, 92 327 Cavernularia 348 Chondropsis (¼ Xanthoparmelia) Calopadiopsis 348 Cavernularia hultenii 330, semiviridis 46, 116 Caloplaca 42–3, 48, 90, 317, 334 Choricystis minor 21 349 Cecidonia 350 Chromatochlamys 347 Caloplaca aurantia 263 Cenozosia 348 Chromatochlamys muscorum Caloplaca cirrochrooides 319 Cephaleuros 38, 70 330 Caloplaca cribrosa 319 Cephaleuros virescens 21 Chroococales 14 Caloplaca elegant´ısima 331 Cephalophysis 349 Chroococcidiopsis 10, 12–15, Caloplaca erecta 318 Cetradonia 348 25, 68, 217 Caloplaca isidiosa 330 Cetradoniaceae 348 Chroodiscus 323, 346 Caloplaca ochraceofulva 331 Cetraria 50, 98, 129, 263, Chroodiscus lamelliferus 325 Caloplaca rosei 327 332, 348 Chroodiscus macrocarpus 323 Caloplaca subunicolor 331 Cetraria ericetorum 221 Chrysothrix 344 Caloplaca thallincola 89–90 Cetraria islandica 50, 78, Chrysotrichaceae 344 Caloplaca tornoe¨nsis 321 90, 98, 130, 188–90, Chytridiomycota 339 Caloplaca volkii 176–7 210–11, 358 Cladia 46, 348 Calotrichopsis 345 Cetrariastrum 272, 348 Cladia aggregata 323 Calothrix 14, 202–3, 217 Cetrariella 348 Cladia retipora 47 Calothrix desertica 15 Cetrariella delisei 321 Cladidium 347 Calvitimela 348 Cetrariopsis 348 Cladina 51, 53, 188 Calycidiaceae 349 Cetrelia 126, 327, 330, 348 Cladonia 36, 46, 53, 63, 98, Calycidium 349 Chaenotheca 54, 62, 72, 126, 155–6, 221, 236, Calycidium cuneatum 325 317, 351 247–8, 256–8, 262–5, 317, Calycidium polycarpum 319 Chaenotheca chrysocephala 332, 333, 348 Camanchaca 344 39, 100 Cladonia alcicornis 165 Campylothelium 351 Chaenothecopsis 317 Cladonia alpestris Candelaria 345 Chaenothecopsis consociata 39 (¼ stellaris) 254, 264–5 Candelariaceae 345 Chaenothecopsis sanguinea Cladonia arbuscula 83 Candelariella 317, 345 327 Cladonia bellidiflora 102, Candelariella coralliza 221 Chaetothyriales 351 358 Candelina 345 Chaetothyriomycetidae Cladonia chlorophaea 126, Canoparmelia 348 341, 351 128, 254–5, 260, 317, Capnodiales 344 Chamydomonas reinhardtii 202 332–3 Caprettia setifera 319 Chiodecton 344 Cladonia coccifera 47 Carbacanthographis 346 Chlorella 22, 24–5, 75 Cladonia convoluta 168, 170 Carbonea 347 Chlorella ellipsoidea 21 Cladonia cristatella 255, Catapyrenium 25, 42, 57, 351 Chlorella mirabilis 21 259, 267–8 Catarraphia 344 ‘‘Chlorella’’ saccharophila 21 Cladonia cucullata 325 Catarrhospora 350 ‘‘Chlorella’’ sphaerica 21 Cladonia cyanopora 325 © Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-87162-4 - Lichen Biology, Second Edition Edited by Thomas H. Nash Index More information Taxon index 465 Cladonia darwinii 325 Coccomyxa 17, 22, 25, 82, 191, Cryptolechia 346 Cladonia ecmocyna 321 201, 203, 219, 359 Cryptothecia 343 Cladonia furcata 98–9, 358 Coccomyxa dispar 30 Cryptothecia rubrocincta 42, Cladonia galindezii 96 Coccomyxa peltigerae 21 358 Cladonia glebosa 325 Coccomyxa subellipsoidea 17 Cryptothele 345 Cladonia mitis 174, 239, Coccotrema 346 Culbersonia nubile 330 272, 321 Coccotrema porinopsis 327 Cyanosarcinia 14 Cladonia nudicaulis 325 Coccotremataceae 346 Cyanotheca 15 Cladonia pocillum 266 Coelocaulon 332 Cyphelium 349 Cladonia portentosa 209, Coelopogon 348 Cyphelium inquinans 275, 236 Coelopogon epiphorellus 331 317 Cladonia pulchra 317 Coenogoniaceae 346 Cystocoleus 41, 352 Cladonia pyxidata 37 Coenogonium 25, 41, 165, Cladonia [¼ Cladina] 323, 346 Dacampia 344 rangiferina 156, 194–5, Coenogonium subvirescens 35 Dacampiaceae 344 237, 253, 256, 305 Collema 3, 43, 48, 68, 229, Dactylina 348 Cladonia salmonea 358 232, 245, 317, 331, 347 Dactylospora 350 Cladonia [¼ Cladina] stellaris Collema 15 Dactylosporaceae 350 [¼ alpestris] 156, 188–90, Collema laeve 48 Dangemannia microcystis 21 209, 211, 230, 242, 246 Collema nigrescens 49, Degelia 347 Cladonia strepilis 330 310–11 Degelia atlantica 327 Cladonia subcervicornis 261, Collema tenax 296 Degelia gayana 319 270 Collemataceae 25, 283, 347 Degelia plumbea 160 Cladonia subtenuis 254, Collemopsidium 317, 344, 351 Degeliella 347 270–1 Combea 344 Degeliella rosulata 325 Cladonia turgida 265 Compsocladium 349 Degeliella versicolor 319 Cladonia vulcani 143, 150 Coniarthonia 343 Dendriscocaulon 87 Cladoniaceae 83, 103, 273, Coniocybaceae 351 Dendrographa 344 323, 333, 348 Conotrema 347 Dendrographa leucophaea 317 Cladonineae 126 Coppinsia 345 Dendrographa minor 158, Clathroporina 346 Cornicularia 332, 348 196 Claurouxia 345, 347 Coronoplectrum 348 Dermatiscum 349 Clauzadea 350 Coriscium 352 Dermatocarpaceae 43 Clauzadeana 347 Corticiaceae 25 Dermatocarpon 25, 57, 267, Clauzadella 351 Corticifraga 350 351, 359 Clavariaceae 352 Corticiruptor 350 Dermatocarpon fluviatile
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  • Phylogenetic Classification of Trametes

    Phylogenetic Classification of Trametes

    TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible.
  • Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi

    Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi

    Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12).
  • An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi

    An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi

    Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al.
  • One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity

    One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity

    Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K.