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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
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“The story so far...” An Interim Bibliography of Hans-Otto Baral for the Years 1981-2014 Martin BEMMANN Ascomycete.org, 6 (5) : 95-98. Décembre 2014 Mise en ligne le 18/12/2014 Hans-Otto Baral, aka “Zotto”, has contributed a vast amount of pa- BARAL H.-O. 1987. — Der Apikalapparat der Helotiales. Eine lichtmi- pers and digital publications which have inspired not only his aca- kroskopische Studie über Arten mit Amyloidring. Zeitschrift für demic colleagues but also the community of amateur mycologists, Mykologie, 53 (1): 119-135. whose efforts he has included in his ascomycete research for de- [http://www.dgfm-ev.de/sites/default/files/ZM531119Baral.pdf] cades, thus helping stimulate their own work. This compilation of BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten I. his publications and ephemeral works to date is also intended as a Zeitschrift für Mykologie, 55 (1): 119-130. guide for all those who are unaware of its extent, and includes keys [http://www.dgfm-ev.de/sites/default/files/ZM551119Baral.pdf] and some otherwise unpublished papers shared on the DVD “In Vivo BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten II. Veritas 2005”. Die Calycellina-Arten mit 4sporigen Asci. Beiträge zur Kenntnis der The form “H.-O.” Baral as opposed to “H. O.” Baral has been used Pilze Mitteleuropas, 5: 209-236. consistently throughout, though it varies in the different publica- BARAL H.-O. 1992. — Vital versus herbarium taxonomy: morphologi- tions. Only names of genera and species are set in italics even if this cal differences between living and dead cells of Ascomycetes, and deviates from the original titles. -
The Phylogenetic Relationships of Torrendiella and Hymenotorrendiella Gen
Phytotaxa 177 (1): 001–025 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2014 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.177.1.1 The phylogenetic relationships of Torrendiella and Hymenotorrendiella gen. nov. within the Leotiomycetes PETER R. JOHNSTON1, DUCKCHUL PARK1, HANS-OTTO BARAL2, RICARDO GALÁN3, GONZALO PLATAS4 & RAÚL TENA5 1Landcare Research, Private Bag 92170, Auckland, New Zealand. 2Blaihofstraße 42, D-72074 Tübingen, Germany. 3Dpto. de Ciencias de la Vida, Facultad de Biología, Universidad de Alcalá, P.O.B. 20, 28805 Alcalá de Henares, Madrid, Spain. 4Fundación MEDINA, Microbiología, Parque Tecnológico de Ciencias de la Salud, 18016 Armilla, Granada, Spain. 5C/– Arreñales del Portillo B, 21, 1º D, 44003, Teruel, Spain. Corresponding author: [email protected] Abstract Morphological and phylogenetic data are used to revise the genus Torrendiella. The type species, described from Europe, is retained within the Rutstroemiaceae. However, Torrendiella species reported from Australasia, southern South America and China were found to be phylogenetically distinct and have been recombined in the newly proposed genus Hymenotorrendiel- la. The Hymenotorrendiella species are distinguished morphologically from Rutstroemia in having a Hymenoscyphus-type rather than Sclerotinia-type ascus apex. Zoellneria, linked taxonomically to Torrendiella in the past, is genetically distinct and a synonym of Chaetomella. Keywords: ascus apex, phylogeny, taxonomy, Hymenoscyphus, Rutstroemiaceae, Sclerotiniaceae, Zoellneria, Chaetomella Introduction Torrendiella was described by Boudier and Torrend (1911), based on T. ciliata Boudier in Boudier and Torrend (1911: 133), a species reported from leaves, and more rarely twigs, of Rubus, Quercus and Laurus from Spain, Portugal and the United Kingdom (Graddon 1979; Spooner 1987; Galán et al. -
LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N
Journal of the Lundy Field Society, 2, 2010 LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N. HEDGER1, J. DAVID GEORGE2, GARETH W. GRIFFITH3, DILUKA PEIRIS1 1School of Life Sciences, University of Westminster, 115 New Cavendish Street, London, W1M 8JS 2Natural History Museum, Cromwell Road, London, SW7 5BD 3Institute of Biological Environmental and Rural Sciences, University of Aberystwyth, SY23 3DD Corresponding author, e-mail: [email protected] ABSTRACT The results of four five-day field surveys of fungi carried out yearly on Lundy from 2004-08 are reported and the results compared with the previous survey by ourselves in 2003 and to records made prior to 2003 by members of the LFS. 240 taxa were identified of which 159 appear to be new records for the island. Seasonal distribution, habitat and resource preferences are discussed. Keywords: Fungi, ecology, biodiversity, conservation, grassland INTRODUCTION Hedger & George (2004) published a list of 108 taxa of fungi found on Lundy during a five-day survey carried out in October 2003. They also included in this paper the records of 95 species of fungi made from 1970 onwards, mostly abstracted from the Annual Reports of the Lundy Field Society, and found that their own survey had added 70 additional records, giving a total of 156 taxa. They concluded that further surveys would undoubtedly add to the database, especially since the autumn of 2003 had been exceptionally dry, and as a consequence the fruiting of the larger fleshy fungi on Lundy, especially the grassland species, had been very poor, resulting in under-recording. Further five-day surveys were therefore carried out each year from 2004-08, three in the autumn, 8-12 November 2004, 4-9 November 2007, 3-11 November 2008, one in winter, 23-27 January 2006 and one in spring, 9-16 April 2005. -
First Records of Two Ascomycete Fungi (Ascomycota) for Slovenia
NATURA SLOVENIAE 21(2): 5-11 Prejeto / Received: 5. 6. 2019 SHORT COMMUNICATION Sprejeto / Accepted: 30. 12. 2019 First records of two ascomycete fungi (Ascomycota) for Slovenia Luka ŠPARL1, Eva ZUPAN2 1Služba Krajinski park Tivoli, Rožnik in Šišenski hrib, Javno podjetje VOKA Snaga d. o. o., Vodovodna cesta 90, SI-1001 Ljubljana; E-mail: [email protected] 2Eva ZUPAN, Vrhovci c XII/24a, SI-1000 Ljubljana; E-mail: [email protected] Abstract. In April and May 2019, two ascomycetous species – Vibrissea filisporia (Bonord.) Korf & A. Sánchez 1967 and Cudoniella tenuispora (Cooke & Massee) Dennis 1974 were observed in Tivoli, Rožnik and Šiška hill Landscape Park in central Slovenia. This is the first evidence of their presence in the country. Despite specific growth condition requirements, there is a reasonable probability that these two species grow also elsewhere in Slovenia, but have simply been overlooked. We recommend further studies of suitable habitats for the species, to complete the knowledge on their distribution within the country. Key words: fungi, Ascomycota, first records, Vibrissea filisporia, Cudoniella tenuispora, Mali Rožnik, Ljubljana, Slovenia Izvleček. Prvi podatki o dveh vrstah gliv zaprtotrosnic (Ascomycota) za Slovenijo – V aprilu in maju 2019 sta bili na območju zavarovanega območja Krajinskega parka Tivoli, Rožnik in Šišenski hrib v osrednji Sloveniji najdeni dve glivi zaprtotrosnici, Vibrissea filisporia (Bonord.) Korf & A. Sánchez 1967 in Cudoniella tenuispora (Cooke & Massee) Dennis 1974. Kljub specifičnim rastiščnim zahtevam je zelo verjetno, da ti dve vrsti uspevata tudi drugod po državi, a sta bili spregledani. Prihodnje študije primernih habitatov bodo lahko dopolnile poznavanje razširjenosti teh vrst v državi. -
The Ascomycota
Papers and Proceedings of the Royal Society of Tasmania, Volume 139, 2005 49 A PRELIMINARY CENSUS OF THE MACROFUNGI OF MT WELLINGTON, TASMANIA – THE ASCOMYCOTA by Genevieve M. Gates and David A. Ratkowsky (with one appendix) Gates, G. M. & Ratkowsky, D. A. 2005 (16:xii): A preliminary census of the macrofungi of Mt Wellington, Tasmania – the Ascomycota. Papers and Proceedings of the Royal Society of Tasmania 139: 49–52. ISSN 0080-4703. School of Plant Science, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia (GMG*); School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tasmania 7001, Australia (DAR). *Author for correspondence. This work continues the process of documenting the macrofungi of Mt Wellington. Two earlier publications were concerned with the gilled and non-gilled Basidiomycota, respectively, excluding the sequestrate species. The present work deals with the non-sequestrate Ascomycota, of which 42 species were found on Mt Wellington. Key Words: Macrofungi, Mt Wellington (Tasmania), Ascomycota, cup fungi, disc fungi. INTRODUCTION For the purposes of this survey, all Ascomycota having a conspicuous fruiting body were considered, excluding Two earlier papers in the preliminary documentation of the endophytes. Material collected during forays was described macrofungi of Mt Wellington, Tasmania, were confined macroscopically shortly after collection, and examined to the ‘agarics’ (gilled fungi) and the non-gilled species, microscopically to obtain details such as the size of the -
Biodiversity of Wood-Decay Fungi in Italy
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Biodiversity of wood-decay fungi in Italy This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/88396 since 2016-10-06T16:54:39Z Published version: DOI:10.1080/11263504.2011.633114 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 28 September 2021 This is the author's final version of the contribution published as: A. Saitta; A. Bernicchia; S.P. Gorjón; E. Altobelli; V.M. Granito; C. Losi; D. Lunghini; O. Maggi; G. Medardi; F. Padovan; L. Pecoraro; A. Vizzini; A.M. Persiani. Biodiversity of wood-decay fungi in Italy. PLANT BIOSYSTEMS. 145(4) pp: 958-968. DOI: 10.1080/11263504.2011.633114 The publisher's version is available at: http://www.tandfonline.com/doi/abs/10.1080/11263504.2011.633114 When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/88396 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Biodiversity of wood-decay fungi in Italy A. Saitta , A. Bernicchia , S. P. Gorjón , E. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Species of Peziza S. Str. on Water-Soaked Wood with Special Reference to a New Species, P
DOI 10.12905/0380.sydowia68-2016-0173 Species of Peziza s. str. on water-soaked wood with special reference to a new species, P. nordica, from central Norway Donald H. Pfister1, *, Katherine F. LoBuglio1 & Roy Kristiansen2 1 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Ave., Cambridge, MA 02138, USA 2 PO Box 32, N-1650 Sellebakk, Norway * e-mail: [email protected] Pfister D.H., LoBuglio K.F. & Kristiansen R. (2016) Species ofPeziza s. str. on water-soaked wood with special reference to a new species, P. nordica, from central Norway. – Sydowia 68: 173–185. Peziza oliviae, P. lohjaoensis, P. montirivicola and a new species from Norway form a well-supported clade within the Peziza s. str. group based on study of the internal transcribed spacer + 5.8S rRNA gene, large subunit rRNA gene and the 6–7 region of the DNA-dependent RNA polymerase II gene. Like P. oliviae and P. montirivicola, the new species, P. nordica, is distinctly stipi- tate and occurs on wood that has been inundated by fresh water. These species also have paraphyses with yellow vacuolar inclu- sions. They fruit early in the season or at high elevations and are presumed to be saprobic. A discussion of application of the name Peziza is given. Keywords: Ascomycota, molecular phylogeny, Pezizales, taxonomy. The present work was begun to determine the Schwein.) Fr., Cudoniella clavus (Alb. & Schwein.) identity of a collection made by one of us (RK) in Dennis and frequently Scutellinia scutellata (L.) August 2014. This large, orange brown to brown, Lambotte. -
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Typification of Hymenoscyphus sulphuratus (Ascomycota, Helotiales) Nicolas VAN VOOREN Summary: Hymenoscyphus sulphuratus is an uncommon species growing on conifer litter, but is typically found on Picea abies needles. As with many other historically described species, this name lacks a clearly de- fined type. The purpose of this note is to provide a type which covers all the features that agree with the protologue and our modern interpretation of this name. Keywords: Helotiaceae, conifer needles, neotypification, epitypification. Ascomycete.org, 6 (5) : 154-157. Décembre 2014 Résumé : Hymenoscyphus sulphuratus est une espèce peu commune se développant sur la litière de coni- Mise en ligne le 18/12/2014 fères, typiquement sur aiguilles de Picea abies. Comme d’autres espèces décrites par les auteurs anciens, ce nom manque d’un type clairement défini. L’objectif de cette note est de fournir un type qui couvre tous les caractères en accord avec le protologue et avec notre conception moderne de ce nom. Mots-clés : Helotiaceae, aiguilles de conifère, néotypification, épitypification. Introduction Asci cylindrical, 114–125 × 8–10 μm, 8-spored, apex conical, with an apical ring reacting blue (bb) in IKI without KOH-pretreatment, of the Hymenoscyphus type, occupying only the lower part of the In a previous article (VAN VOOREN & CHEYPE, 2008), a thorough des- apical thickening (which is 2–3 μm thick); base arising from croziers. cription was given off a Hymenoscyphus s.l. species growing on de- Paraphyses numerous, straight, cylindrical, not enlarged at the caying conifer needles, which was identified as Helotium apex (here 2–3 μm wide), hyaline, without visible contents, as long sulphuratum. -
<I> Lecanoromycetes</I> of Lichenicolous Fungi Associated With
Persoonia 39, 2017: 91–117 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.05 Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera R. Pino-Bodas1,2, M.P. Zhurbenko3, S. Stenroos1 Key words Abstract Though most of the lichenicolous fungi belong to the Ascomycetes, their phylogenetic placement based on molecular data is lacking for numerous species. In this study the phylogenetic placement of 19 species of cladoniicolous species lichenicolous fungi was determined using four loci (LSU rDNA, SSU rDNA, ITS rDNA and mtSSU). The phylogenetic Pilocarpaceae analyses revealed that the studied lichenicolous fungi are widespread across the phylogeny of Lecanoromycetes. Protothelenellaceae One species is placed in Acarosporales, Sarcogyne sphaerospora; five species in Dactylosporaceae, Dactylo Scutula cladoniicola spora ahtii, D. deminuta, D. glaucoides, D. parasitica and Dactylospora sp.; four species belong to Lecanorales, Stictidaceae Lichenosticta alcicorniaria, Epicladonia simplex, E. stenospora and Scutula epiblastematica. The genus Epicladonia Stictis cladoniae is polyphyletic and the type E. sandstedei belongs to Leotiomycetes. Phaeopyxis punctum and Bachmanniomyces uncialicola form a well supported clade in the Ostropomycetidae. Epigloea soleiformis is related to Arthrorhaphis and Anzina. Four species are placed in Ostropales, Corticifraga peltigerae, Cryptodiscus epicladonia, C. galaninae and C. cladoniicola