First Records of Two Ascomycete Fungi (Ascomycota) for Slovenia
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Psychrophilic Fungi from the World's Roof
Persoonia 34, 2015: 100–112 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685878 Psychrophilic fungi from the world’s roof M. Wang1,2, X. Jiang3, W. Wu3, Y. Hao1, Y. Su1, L. Cai1, M. Xiang1, X. Liu1 Key words Abstract During a survey of cold-adapted fungi in alpine glaciers on the Qinghai-Tibet Plateau, 1 428 fungal isolates were obtained of which 150 species were preliminary identified. Phoma sclerotioides and Pseudogymnoascus pan- glaciers norum were the most dominant species. Psychrotolerant species in Helotiales (Leotiomycetes, Ascomycota) were Phoma sclerotioides studied in more detail as they represented the most commonly encountered group during this investigation. Two Pseudogymnoascus pannorum phylogenetic trees were constructed based on the partial large subunit nrDNA (LSU) to infer the taxonomic place- Psychrophila ments of these strains. Our strains nested in two well-supported major clades, which represented Tetracladium and psychrotolerant a previously unknown lineage. The unknown lineage is distant to any other currently known genera in Helotiales. Tetracladium Psychrophila gen. nov. was therefore established to accommodate these strains which are characterised by globose or subglobose conidia formed from phialides on short or reduced conidiophores. Our analysis also showed that an LSU-based phylogeny is insufficient in differentiating strains at species level. Additional analyses using combined sequences of ITS+TEF1+TUB regions were employed to further investigate the phylogenetic relationships of these strains. Together with the recognisable morphological distinctions, six new species (i.e. P. antarctica, P. lutea, P. oli- vacea, T. ellipsoideum, T. globosum and T. psychrophilum) were described. Our preliminary investigation indicates a high diversity of cold-adapted species in nature, and many of them may represent unknown species. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Species of Peziza S. Str. on Water-Soaked Wood with Special Reference to a New Species, P
DOI 10.12905/0380.sydowia68-2016-0173 Species of Peziza s. str. on water-soaked wood with special reference to a new species, P. nordica, from central Norway Donald H. Pfister1, *, Katherine F. LoBuglio1 & Roy Kristiansen2 1 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Ave., Cambridge, MA 02138, USA 2 PO Box 32, N-1650 Sellebakk, Norway * e-mail: [email protected] Pfister D.H., LoBuglio K.F. & Kristiansen R. (2016) Species ofPeziza s. str. on water-soaked wood with special reference to a new species, P. nordica, from central Norway. – Sydowia 68: 173–185. Peziza oliviae, P. lohjaoensis, P. montirivicola and a new species from Norway form a well-supported clade within the Peziza s. str. group based on study of the internal transcribed spacer + 5.8S rRNA gene, large subunit rRNA gene and the 6–7 region of the DNA-dependent RNA polymerase II gene. Like P. oliviae and P. montirivicola, the new species, P. nordica, is distinctly stipi- tate and occurs on wood that has been inundated by fresh water. These species also have paraphyses with yellow vacuolar inclu- sions. They fruit early in the season or at high elevations and are presumed to be saprobic. A discussion of application of the name Peziza is given. Keywords: Ascomycota, molecular phylogeny, Pezizales, taxonomy. The present work was begun to determine the Schwein.) Fr., Cudoniella clavus (Alb. & Schwein.) identity of a collection made by one of us (RK) in Dennis and frequently Scutellinia scutellata (L.) August 2014. This large, orange brown to brown, Lambotte. -
Ascomycete Fungi Species List
Ascomycete Fungi Species List Higher Classification1 Kingdom: Fungi, Phylum: Ascomycota Class (C:), Order (O:) and Family (F:) Scientific Name1 English Name(s)2 C: Geoglossomycetes (Earth Tongues) O: Geoglossales F: Geoglossaceae Trichoglossum hirsutum Black Earth Tongue C: Leotiomycetes O: Helotiales F: Bulgariaceae Bulgaria inquinans Black Bulgar F: Helotiaceae Chlorociboria aeruginascens Green Elfcup, Green Wood Cup, Green Stain Fungus F: Leotiaceae Leotia lubrica Jellybaby F: Vibrisseaceae Vibrissea truncorum O: Pezizales F: Helvellaceae Gyromitra infula Hooded False Morel, Elfin Saddle Helvella macropus Felt Saddle Fungus Helvella spp. Elfin Saddles F: Pyronemataceae Cheilymenia theleboloides Scutellinia scutellata Eyelash Cup F: Sarcoscyphaceae Cookeina speciosa Cookeina venezuelae C: Sordariomycetes O: Hypocreales F: Clavicipitaceae Ophiocordyceps melolonthae O: Xylariales F: Xylariaceae Daldinia sp. Xylaria globosa Xylaria hypoxylon Candlestick Fungus, Candlesnuff Fungus, Stag's Horn Fungus Xylaria polymorpha Dead Man's Fingers Xylaria spp. Xylocoremium sp. Page 1 of 2 Cloudbridge Nature Reserve, Costa Rica Last Updated: February 3, 2017 Ascomycete Fungi Species List NOTES: Short-forms: sp. = one species of the given genus identified; spp. = more than one of species of the given genus identified 1, Classification and scientific names based on current classifications as found on MycoBank (www.mycobank.org) 2, English names are not standardized for fungi and the English names provided are not considered the definitive names for the given species. English names were gathered from a variety of sources including mushroom identification books and various fungi related websites. Contributors: Major Contributor – Baptiste Saunier. Other Contributors – Ranzeth Gómez Navarro. Page 2 of 2 Cloudbridge Nature Reserve, Costa Rica Last Updated: February 3, 2017 . -
Prilozi Contributions
ISSN 1857–9027 e-ISSN 1857–9949 MAKEDONSKA AKADEMIJA NA NAUKITE I UMETNOSTITE ODDELENIE ZA PRIRODNO-MATEMATI^KI I BIOTEHNI^KI NAUKI MACEDONIAN ACADEMY OF SCIENCES AND ARTS SECTION OF NATURAL, MATHEMATICAL AND BIOTECHNICAL SCIENCES PRILOZI CONTRIBUTIONS 40 (2) СКОПЈЕ – SKOPJE 2019 Publisher: Macedonian Academy of Sciences and Arts Editor-in-Chief Gligor Jovanovski, Macedonia Guest editors Kiril Sotirovski, Macedonia Viktor Gjamovski, Macedonia Co-editor-in-Chief Dončo Dimovski, Macedonia E d i t o r i a l B o a r d: Sjur Baardsen, Norway Lars Lonnstedt, Sweden Ivan Blinkov, Macedonia Vlado Matevski, Macedonia Blažo Boev, Macedonia Dubravka Matković-Čalogović, Croatia Stevo Božinovski, USA Nenad Novkovski, Macedonia Mitrofan Cioban, Moldova Nikola Panov, Macedonia Andraž Čarni, Slovenia Shushma Patel, England Ludwik Dobrzynski, France Dejan Prelević, Germany Gjorgji Filipovski, Macedonia Kiril Sotirovski, Macedonia Viktor Gjamovski, Macedonia Hari M. Srivastava, Canada Marjan Gušev, Macedonia Ivo Šlaus, Croatia Gordan Karaman, Montenegro Bogdan Šolaja, Serbia Borislav Kobiljski, Serbia Franci Štampar, Slovenia Dénes Loczy, Hungary Petar Zhelev, Bulgaria * Editorial assistant: Sonja Malinovska * Macedonian language adviser: Sofija Cholakovska-Popovska * Technical editor: Sonja Malinovska * Printed by: MAR-SAZ – Skopje * Number of copies: 300 * 2019 Published twice a year The Contributions, Sec. Nat. Math. Biotech. Sci. is indexed in: Chemical Abstracts, Mathematical Reviews, Google Scholar, EBSCO and DOAJ http://manu.edu.mk/contributions/NMBSci/ Прилози, Одд. прир. мат. биотех. науки, МАНУ Том Бр. стр. Скопје 40 2 145–276 2019 Contributions, Sec. Nat. Math. Biotech. Sci., MASA Vol. No. pp. Skopje T ABL E O F CONTENTS Marjan Andreevski, Duško Mukaetov CONTENT OF EXCHANGEABLE CATIONS IN ALBIC LUVISOLS IN THE REPUBLIC OF MACEDONIA ........................................................................................................ -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
Approach to the Mycological Catalogue of the Dehesa of Somosierra and New Records for the Community of Madrid (Spain)
ARTÍCULOS Botanica Complutensis ISSN-e: 1988-2874 http://dx.doi.org/10.5209/BOCM.64093 Approach to the mycological catalogue of the Dehesa of Somosierra and new records for the Community of Madrid (Spain) Borja Rodríguez de Francisco, Adrián Lázaro-Lobo & Jesús Palá-Paúl1 Fecha recibido: 10/04/2019 / Fecha aceptado: 11/09/2019 Abstract. An approach to the mycological catalogue of the Dehesa of Somosierra, in the northeast corner of the Com- munity of Madrid, has been carried out. The expeditions were accomplished from April 2013 to October 2015. A total of 96 species were identified belonging to 45 families and 18 orders. To the best of our knowledge, it is the first time that the species as Hyalorbilia inflatula, Panellus serotinus and Vibrissea filisporia f. boudieri have been cited in the Community of Madrid. Keywords: Mycology; diversity; Hyalorbilia inflatula; Panellus serotinus; Vibrissea filisporia f. boudieri. [es] Aproximación al catálogo micológico de la Dehesa de Somosierra y nuevas citas para la Comunidad de Madrid (España) Resumen. Con este trabajo presentamos la aproximación al catálogo micológico de la Dehesa de Somosierra, ubicada en la parte noreste de la Comunidad de Madrid. Se realizaron muestreos periódicos a lo largo del año desde abril de 2013 a octubre de 2015. Como resultado de los mismos se han identificado un total de 96 especies, correspondientes a 45 familias integradas en 18 órdenes. Hasta donde sabemos, es la primera vez que se citan para la Comunidad de Madrid las especies Hyalorbilia inflatula, Panellus serotinus y Vibrissea filisporia f. boudieri. Palabras clave: Micología; diversidad; Hyalorbilia inflatula; Panellus serotinus; Vibrissea filisporia f. -
Dothideomycetes and Leotiomycetes Sterile Mycelia
Gnavi et al. SpringerPlus 2014, 3:508 http://www.springerplus.com/content/3/1/508 a SpringerOpen Journal RESEARCH Open Access Dothideomycetes and Leotiomycetes sterile mycelia isolated from the Italian seagrass Posidonia oceanica based on rDNA data Giorgio Gnavi1, Enrico Ercole2, Luigi Panno1, Alfredo Vizzini2 and Giovanna C Varese1* Abstract Marine fungi represent a group of organisms extremely important from an ecological and biotechnological point of view, but often still neglected. In this work, an in-depth analysis on the systematic and the phylogenetic position of 21 sterile mycelia, isolated from Posidonia oceanica, was performed. The molecular (ITS and LSU sequences) analysis showed that several of them are putative new species belonging to three orders in the Ascomycota phylum: Pleosporales, Capnodiales and Helotiales. Phylogenetic analyses were performed using Bayesian Inference and Maximum Likelihood approaches. Seven sterile mycelia belong to the genera firstly reported from marine environments. The bioinformatic analysis allowed to identify five sterile mycelia at species level and nine at genus level. Some of the analyzed sterile mycelia could belong to new lineages of marine fungi. Keywords: Dothideomycetes; Fungal molecular phylogeny; Leotiomycetes; Marine fungi; Posidonia oceanica; Sterile mycelia Background metabolites that often display promising biological and The oceans host a vast biodiversity. Most of the marine pharmacological properties (Rateb and Ebel 2011) and the microbial biodiversity has not yet been discovered and remarkably high hit rates of marine compounds in screen- characterized, both taxonomically and biochemically. ing for drug leads makes the search in marine organisms Marine fungal strains have been obtained from virtually quite attractive. every possible marine habitat, including inorganic matter, In our previous work (Panno et al. -
Chlorovibrissea Korfii Sp. Nov. from Northern Hemisphere and Vibrissea Flavovirens New to China
A peer-reviewed open-access journal MycoKeys 26:Chlorovibrissea 1–11 (2017) korfii sp. nov. from northern hemisphere and Vibrissea flavovirens... 1 doi: 10.3897/mycokeys.26.14506 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Chlorovibrissea korfii sp. nov. from northern hemisphere and Vibrissea flavovirens new to China Huan-Di Zheng1, Wen-Ying Zhuang1,2 1 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China 2 University of Chinese Academy of Sciences, Beijing 100049, China Corresponding author: Wen-Ying Zhuang ([email protected]) Academic editor: A. Miller | Received 13 Julne 2017 | Accepted 7 July 2017 | Published 4 August 2017 Citation: Zheng H-D, Zhuang W-Y (2017) Chlorovibrissea korfiisp. nov. from northern hemisphere and Vibrissea flavovirens new to China. MycoKeys 26: 1–11. https://doi.org/10.3897/mycokeys.26.14506 Abstract A new species, Chlorovibrissea korfii, is described and illustrated, which is distinct from other members of the genus by the overall pale greenish apothecia 0.8–2.0 mm in diam. and 0.6–1.5 mm high, J+ asci 70–83 × 4.5–5.5 μm, and non-septate ascospores 44–52 × 1.2–1.5 μm. This is the first species of Chlo- rovibrissea reported from northern hemisphere. Vibrissea flavovirens is reported from China for the first time. Sequence analyses of the internal transcribed spacer of nuclear ribosomal DNA are used to confirm the affinity of the two taxa. Key words morphology, sequence analysis, taxonomy, Vibrisseaceae Introduction Vibrisseaceae was erected by Korf in 1990 to accommodate the genera Vibrissea Fr., Chlorovibrissea L.M. -
Mycosphaerella Is Polyphyletic
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 58: 1–32. 2007. doi:0.3114/sim.2007.58.0 Mycosphaerella is polyphyletic P.W. Crous*, U. Braun2 and J.Z. Groenewald CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany *Correspondence: Pedro W. Crous, [email protected] Abstract: Mycosphaerella, one of the largest genera of ascomycetes, encompasses several thousand species and has anamorphs residing in more than 30 form genera. Although previous phylogenetic studies based on the ITS rDNA locus supported the monophyly of the genus, DNA sequence data derived from the LSU gene distinguish several clades and families in what has hitherto been considered to represent the Mycosphaerellaceae. Several important leaf spotting and extremotolerant species need to be disposed to the genus Teratosphaeria, for which a new family, the Teratosphaeriaceae, is introduced. Other distinct clades represent the Schizothyriaceae, Davidiellaceae, Capnodiaceae, and the Mycosphaerellaceae. Within the two major clades, namely Teratosphaeriaceae and Mycosphaerellaceae, most anamorph genera are polyphyletic, and new anamorph concepts need to be derived to cope with dual nomenclature within the Mycosphaerella complex. Taxonomic novelties: Batcheloromyces eucalypti (Alcorn) Crous & U. Braun, comb. nov., Catenulostroma Crous & U. Braun, gen. nov., Catenulostroma abietis (Butin & Pehl) Crous & U. Braun, comb. nov., Catenulostroma chromoblastomycosum Crous & U. Braun, sp. nov., Catenulostroma elginense (Joanne E. Taylor & Crous) Crous & U. Braun, comb. nov., Catenulostroma excentricum (B. Sutton & Ganap.) Crous & U. Braun, comb. nov., Catenulostroma germanicum Crous & U. Braun, sp. nov., Catenulostroma macowanii (Sacc.) Crous & U. -
The Root-Symbiotic Rhizoscyphus Ericae Aggregate and Hyaloscypha (Leotiomycetes) Are Congeneric: Phylogenetic and Experimental Evidence
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 92: 195–225 (2019). The root-symbiotic Rhizoscyphus ericae aggregate and Hyaloscypha (Leotiomycetes) are congeneric: Phylogenetic and experimental evidence J. Fehrer1*,3,M.Reblova1,3, V. Bambasova1, and M. Vohník1,2 1Institute of Botany, Czech Academy of Sciences, 252 43 Průhonice, Czech Republic; 2Department of Plant Experimental Biology, Faculty of Science, Charles University, 128 44 Prague, Czech Republic *Correspondence: J. Fehrer, [email protected] 3These authors contributed equally to the paper. Abstract: Data mining for a phylogenetic study including the prominent ericoid mycorrhizal fungus Rhizoscyphus ericae revealed nearly identical ITS sequences of the bryophilous Hyaloscypha hepaticicola suggesting they are conspecific. Additional genetic markers and a broader taxonomic sampling furthermore suggested that the sexual Hyaloscypha and the asexual Meliniomyces may be congeneric. In order to further elucidate these issues, type strains of all species traditionally treated as members of the Rhizoscyphus ericae aggregate (REA) and related taxa were subjected to phylogenetic analyses based on ITS, nrLSU, mtSSU, and rpb2 markers to produce comparable datasets while an in vitro re-synthesis experiment was conducted to examine the root-symbiotic potential of H. hepaticicola in the Ericaceae. Phylogenetic evidence demonstrates that sterile root-associated Meliniomyces, sexual Hyaloscypha and Rhizoscyphus, based on R. ericae, are indeed congeneric. To this monophylum also belongs the phialidic dematiaceous hyphomycetes Cadophora finlandica and Chloridium paucisporum. We provide a taxonomic revision of the REA; Meliniomyces and Rhizoscyphus are reduced to synonymy under Hyaloscypha. Pseudaegerita, typified by P. corticalis, an asexual morph of H. spiralis which is a core member of Hyaloscypha, is also transferred to the synonymy of the latter genus.