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A Survey of Fungi at the University of Wisconsin-Waukesha Field Station
University of Wisconsin Milwaukee UWM Digital Commons Field Station Bulletins UWM Field Station Spring 1993 A survey of fungi at the University of Wisconsin- Waukesha Field Station Alan D. Parker University of Wisconsin-Waukesha Follow this and additional works at: https://dc.uwm.edu/fieldstation_bulletins Part of the Forest Biology Commons, and the Zoology Commons Recommended Citation Parker, A.D. 1993 A survey of fungi at the University of Wisconsin-Waukesha Field Station. Field Station Bulletin 26(1): 1-10. This Article is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Field Station Bulletins by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. A Survey of Fungi at the University of Wisconsin-Waukesha Field Station Alan D. Parker Department of Biological Sciences University of Wisconsin-Waukesha Waukesha, Wisconsin 53188 Introduction The University of Wisconsin-Waukesha Field Station was founded in 1967 through the generous gift of a 98 acre farm by Ms. Gertrude Sherman. The facility is located approximately nine miles west of Waukesha on Highway 18, just south of the Waterville Road intersection. The site consists of rolling glacial deposits covered with old field vegetation, 20 acres of xeric oak woods, a small lake with marshlands and bog, and a cold water stream. Other communities are being estab- lished as a result of restoration work; among these are mesic prairie, oak opening, and stands of various conifers. A long-term study of higher fungi and Myxomycetes, primarily from the xeric oak woods, was started in 1978. -
The Phylogenetic Relationships of Torrendiella and Hymenotorrendiella Gen
Phytotaxa 177 (1): 001–025 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2014 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.177.1.1 The phylogenetic relationships of Torrendiella and Hymenotorrendiella gen. nov. within the Leotiomycetes PETER R. JOHNSTON1, DUCKCHUL PARK1, HANS-OTTO BARAL2, RICARDO GALÁN3, GONZALO PLATAS4 & RAÚL TENA5 1Landcare Research, Private Bag 92170, Auckland, New Zealand. 2Blaihofstraße 42, D-72074 Tübingen, Germany. 3Dpto. de Ciencias de la Vida, Facultad de Biología, Universidad de Alcalá, P.O.B. 20, 28805 Alcalá de Henares, Madrid, Spain. 4Fundación MEDINA, Microbiología, Parque Tecnológico de Ciencias de la Salud, 18016 Armilla, Granada, Spain. 5C/– Arreñales del Portillo B, 21, 1º D, 44003, Teruel, Spain. Corresponding author: [email protected] Abstract Morphological and phylogenetic data are used to revise the genus Torrendiella. The type species, described from Europe, is retained within the Rutstroemiaceae. However, Torrendiella species reported from Australasia, southern South America and China were found to be phylogenetically distinct and have been recombined in the newly proposed genus Hymenotorrendiel- la. The Hymenotorrendiella species are distinguished morphologically from Rutstroemia in having a Hymenoscyphus-type rather than Sclerotinia-type ascus apex. Zoellneria, linked taxonomically to Torrendiella in the past, is genetically distinct and a synonym of Chaetomella. Keywords: ascus apex, phylogeny, taxonomy, Hymenoscyphus, Rutstroemiaceae, Sclerotiniaceae, Zoellneria, Chaetomella Introduction Torrendiella was described by Boudier and Torrend (1911), based on T. ciliata Boudier in Boudier and Torrend (1911: 133), a species reported from leaves, and more rarely twigs, of Rubus, Quercus and Laurus from Spain, Portugal and the United Kingdom (Graddon 1979; Spooner 1987; Galán et al. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
Biodiversity of Wood-Decay Fungi in Italy
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Biodiversity of wood-decay fungi in Italy This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/88396 since 2016-10-06T16:54:39Z Published version: DOI:10.1080/11263504.2011.633114 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 28 September 2021 This is the author's final version of the contribution published as: A. Saitta; A. Bernicchia; S.P. Gorjón; E. Altobelli; V.M. Granito; C. Losi; D. Lunghini; O. Maggi; G. Medardi; F. Padovan; L. Pecoraro; A. Vizzini; A.M. Persiani. Biodiversity of wood-decay fungi in Italy. PLANT BIOSYSTEMS. 145(4) pp: 958-968. DOI: 10.1080/11263504.2011.633114 The publisher's version is available at: http://www.tandfonline.com/doi/abs/10.1080/11263504.2011.633114 When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/88396 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Biodiversity of wood-decay fungi in Italy A. Saitta , A. Bernicchia , S. P. Gorjón , E. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Hymenoscyphus Fraxineus
Hymenoscyphus fraxineus Synonyms: Chalara fraxinea Kowalski (anamorph), Hymenoscyphus pseudoalbidus (teleomorph). Common Name(s) Ash dieback, ash decline Type of Pest Fungal pathogen Taxonomic Position Class: Leotiomycetes, Order: Helotiales, Family: Helotiaceae Reason for Inclusion in Figure 1. Mature Fraxinus excelsior showing Manual extensive shoot, twig, and branch dieback. CAPS Target: AHP Prioritized Epicormic shoot formation is also present. Photo Pest List – 2010-2016 credit: Andrin Gross. Background An extensive dieback of ash (Fig. 1) was observed from 1996 to 2006 in Lithuania and Poland. Trees were dying in all age classes, irrespective of site conditions and regeneration conditions. A fungus, described as a new species Chalara fraxinea, was isolated from shoots and some roots (Kowalski, 2006). The fungal pathogen varied from other species of Chalara by its small, short cylindrical conidia extruded in chains or in slimy droplets, morphological features of the phialophores, and by colony characteristics. Initial taxonomic studies concerning Chalara fraxinea established that its perfect state was the ascomycete Hymenoscyphus albidus (Gillet) W. Phillips, a fungus that has been known from Europe since 1851. Kowalski and Holdenrieder (2009b) provide a description and photographs of the teleomorphic state, Hymenoscyphus albidus. A molecular taxonomic study of Hymenoscyphus albidus indicated that there was significant evidence for the existence of two morphologically very similar taxa, H. albidus, and a new species, Hymenoscyphus pseudoalbidus (Queloz et al., 2010). Furthermore, studies suggested that H. albidus was likely a non-pathogenic species, whereas H. pseudoalbidus was the virulent species responsible for the current ash dieback epidemic in Europe (Queloz et al., 2010). A survey in Denmark showed that expansion of H. -
Taxonomic Study of Lambertella (Rutstroemiaceae, Helotiales) and Allied Substratal Stroma Forming Fungi from Japan
Taxonomic Study of Lambertella (Rutstroemiaceae, Helotiales) and Allied Substratal Stroma Forming Fungi from Japan 著者 趙 彦傑 内容記述 この博士論文は全文公表に適さないやむを得ない事 由があり要約のみを公表していましたが、解消した ため、2017年8月23日に全文を公表しました。 year 2014 その他のタイトル 日本産Lambertella属および基質性子座を形成する 類縁属の分類学的研究 学位授与大学 筑波大学 (University of Tsukuba) 学位授与年度 2013 報告番号 12102甲第6938号 URL http://hdl.handle.net/2241/00123740 Taxonomic Study of Lambertella (Rutstroemiaceae, Helotiales) and Allied Substratal Stroma Forming Fungi from Japan A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Agricultural Science (Doctoral Program in Biosphere Resource Science and Technology) Yan-Jie ZHAO Contents Chapter 1 Introduction ............................................................................................................... 1 1–1 The genus Lambertella in Rutstroemiaceae .................................................................... 1 1–2 Taxonomic problems of Lambertella .............................................................................. 5 1–3 Allied genera of Lambertella ........................................................................................... 7 1–4 Objectives of the present research ................................................................................. 12 Chapter 2 Materials and Methods ............................................................................................ 17 2–1 Collection and isolation -
Genomic Analysis of the Hydrocarbon-Producing, Cellulolytic, Endophytic Fungus Ascocoryne Sarcoides
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Harvard University - DASH Genomic Analysis of the Hydrocarbon-Producing, Cellulolytic, Endophytic Fungus Ascocoryne sarcoides The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. Citation Gianoulis, Tara A., Meghan A. Griffin, Daniel J. Spakowicz, Brian F. Dunican, Cambria J. Alpha, Andrea Sboner, A. Michael Sismour, et al. 2012. Genomic analysis of the hydrocarbon- producing, cellulolytic, endophytic fungus Ascocoryne sarcoides. PLoS Genetics 8(3): e1002558. Published Version doi:10.1371/journal.pgen.1002558 Accessed February 19, 2015 9:56:05 AM EST Citable Link http://nrs.harvard.edu/urn-3:HUL.InstRepos:9696331 Terms of Use This article was downloaded from Harvard University's DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA (Article begins on next page) Genomic Analysis of the Hydrocarbon-Producing, Cellulolytic, Endophytic Fungus Ascocoryne sarcoides Tara A. Gianoulis1,2,3.{, Meghan A. Griffin4., Daniel J. Spakowicz4., Brian F. Dunican4, Cambria J. Alpha4, Andrea Sboner3,4, A. Michael Sismour1,2, Chinnappa Kodira5, Michael Egholm6, George M. Church1,2, Mark B. Gerstein3,4*, Scott A. Strobel4* 1 Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America, 2 Wyss Institute for Biologically Inspired -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
Notes on Ascomycetes 11: Discomycetes
ACTA BOT. ISL. 10: 31-36, 1990. Notes on Ascomycetes 11: Discomycetes Helgi Hallgrfmsson and Henrik F. G~tzsche Lagarasi 2, 700 Egilsstaoir, Iceland and Institut for Sporeplanter, 0ster-Farirnagsgade 2D, 1353 Copenhagen K, Denmark ABSTRACT: Sixteen species of, Helotiales and Pezizales (Discomy cetes) are recorded, whereof 9 species are new to the Icelandic flora: Lachnellula suecica. Ciboria polygoni, Peziza cf. cerea, Peziza fimeti. Peziza granulosa. Geopora sp.. Melastiza eha teri, Otide8 cf. alutacea and T8rzetta spurcata. HELOTIALES Helotiaceae ASCOCORYNE SARCOIDES (Jacq.) Groves & Wils. The species was reported by ROSTRUP (1903, p.313) under the name Coryne sarcoides (Jacq.) Tul., from Halssk6gur in N-Ice land, based on a specimen collected by 6lafur Daviosson. It has been found many times in the Public Park in Akureyri (AMNH 199, 9958), growing on stumps of different trees, mainly Betula and Sorbus spp., also in Arnarh6ll near Akureyri, in a garden. In SW-Iceland it has been found by Eirikur Jensson in Fossvogur 1988, and in Vifilsstaoahlio near Hafnarfjorour 1978. In the East it has been collected in the forests of Egilsstaoir and Hallormsstaour in 1987-1988 (AMNH 11642, 11856). The growing season is from late August to October. Since the species is rarely found in the ascus-state, it can not be ascertained whether A. cylichnum might also be present in the material or not. Hyaloscyphaceae HYMENOSCYPHUS cf. CALYCULUS (Sow.) Phill. The species was reported by ROSTRUP (1903, p. 315) as Phialea virgultorum (Vahl.) Sacc., from Halssk6gur and Horgar- 32 ACTA BOTANICA ISLANDICA NO. 10 dalur, N. -Iceland, collected by 6lafur Daviosson on branches of Betula pubescens and Salix lanata. -
Ascocoryne Sarcoides and Ascocoryne Cylichnium
Ascocoryne sarcoides and Ascocoryne cylichnium. Descriptions and comparison FINN ROLL-HANSEN AND HELGA ROLL-HANSEN Roll-Hansen, F. & Roll-Hansen, H. 1979. Ascocoryne sarcoides and Ascocoryne cylichnium. Descriptions and comparison. Norw. J. Bot. Vol. 26, pp. 193-206. Oslo. ISSN 0300-1156. Descriptions are given and characters evaluated of apothecia and cultures of Ascocoryne sarcoides (Jacq. ex S. F. Gray) Groves & Wilson and A. cylichnium (L. R. Tul.) Korf. The separation into the two species may be justified by the occurrence of typical ascoconidiain/4. cylichnium, by a relatively sharp boundary between ectal and medullary excipulum in^4. sarcoides, and to some extent by other characters. F. Roll-Hansen & H. Roll-Hansen, Norwegian Forest Research Institute, Forest Pathology, P. O. Box 62, 1432 As, Norway. Ascocoryne species have been isolated by many Former descriptions authors from wood in living spruce trees both in North America and in Europe. In Norway the Ascocoryne sarcoides (Jacq. ex S. F. Ascocoryne species seem to be more common Gray) Groves & Wilson than any other group of fungi in unwounded Groves & Wilson (1967) gave the diagnosis of the stems oiPicea abies. They do not seem to cause genus Ascocoryne and transferred Octospora any rot or discoloration of importance, but they sarcoides Jacq. ex S. F. Gray (Coryne sarcoides may influence the development of other fungi in [Jacq. ex S. F. Gray] Tul.) to that genus. The the stems. conidial state is Coryne dubia Pers. ex S. F. Great confusion exists regarding identification Gray (Pirobasidium sarcoides Hohn.). Descrip of isolates of the Ascocoryne species. In a pre tions of the apothecia with the asci and the liminary paper (Roll-Hansen & Roll-Hansen ascospores have been given by, for example, 1976) the authors reported isolation of Knapp (1924), Dennis (1956), Gremmen (1960), Ascocoryne sarcoides (Jacq.