Human CLASP1 Mediates Kinetochore Attachment to Dynamic

Total Page:16

File Type:pdf, Size:1020Kb

Human CLASP1 Mediates Kinetochore Attachment to Dynamic Human CLASP1 mediates kinetochore interactions with the plus ends of dynamic microtubules Helder Maiato*†, Conly L. Rieder‡, Jason R. Swedlow§, Richard Cole‡, Claudio E. Sunkel†║ and William C. Earnshaw*¶ *Chromosome Structure Group, Wellcome Trust Centre for Cell Biology, Institute of Cell and Molecular Biology, Swann Building, 6.01, University of Edinburgh, King’s Buildings, Mayfield Road, Edinburgh EH9 3JR, Scotland, United Kingdom. †Laboratório de Genética Molecular, Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua Campo Alegre, 823, 4150-180 Porto, Portugal. ‡ Laboratory of Cell Regulation, Division of Molecular Medicine, Wadsworth Center, P.O. Box 509, Albany, New York 12201-0509, USA. §Division of Gene Regulation and Expression, The University of Dundee, MSI/WTB Complex, Dundee, DD1 5EH, Scotland, U. K. ║Instituto de Ciências Biomédicas de Abel Salazar, Universidade do Porto, Porto, Portugal. ¶ To whom correspondence should be addressed. Maiato et al. CLASP1 in the kinetochore ABSTRACT One of the most intriguing aspects of mitosis is the ability of kinetochores to hold onto the plus-ends of dynamic microtubules that are actively gaining or losing tubulin subunits. Here we show that the microtubule-associated protein CLASP1 is localized preferentially near the plus-ends of growing microtubules during spindle formation and is also a component of a novel region that we term the outer kinetochore corona. A truncated form of CLASP1 lacking the kinetochore-binding domain behaves as a dominant-negative, leading to the formation of unique single or double asters comprised of radial arrays of microtubule bundles that are highly resistant to depolymerization. Microinjection of cells with antibodies specific to CLASP1 causes bipolar spindles to collapse, forming bipolar or monopolar arrays of microtubules with chromosomes buried in the interior. Suppression of microtubule dynamics in injected cells rescues the kinetochore association with plus ends of microtubules at the periphery of the asters. Our data suggest that CLASP1 is required for kinetochore-associated microtubules to exhibit normal dynamic behaviour. 2 Maiato et al. CLASP1 in the kinetochore INTRODUCTION Kinetochores are the specialized structures that attach chromosomes to the plus ends of spindle microtubules (Brinkley, 1966; Jokelainen, 1967; Euteneuer and McIntosh, 1981). One constraint on this attachment is that microtubules are highly dynamic structures that alternate between states of growth and shrinkage (Mitchison and Kirschner, 1984; Desai and Mitchison, 1997). Furthermore, the bundled kinetochore microtubules exhibit dynamic behaviour whilst remaining attached (Mitchison and Kirschner, 1985; Mitchison et al., 1986; Koshland et al., 1988; Coue et al., 1991; Hyman and Mitchison, 1991). Thus, a captured microtubule is stabilized at a kinetochore not because it becomes less dynamic, but because it cannot detach (Hyman and Karsenti, 1996). The demonstration that kinetochores could hold onto dynamic microtubules identified one of the key questions in chromosome segregation: how do kinetochores remain attached to microtubules that are actively gaining or loosing tubulin subunits at their plus ends? The dynamic behaviour of microtubules is largely regulated by microtubule- associated proteins (MAPs), and recently it has been possible to reconstitute apparently normal microtubule dynamics in solution from purified components (Kinoshita et al., 2001). However, the situation at the kinetochore is more complex, and alternations between states of microtubule growth and shrinkage are regulated at least in part by kinetochore components (Hyman and Mitchison, 1990). Candidates for this role include MCAK/XKCM1 (Wordeman and Mitchison, 1995; Walczak et al., 1996) and the Kin1 kinesins (Desai et al,, 1999), but many other factors are likely to be involved. More recently, extensive studies in budding yeast have pointed to a critical role for a number of non-motor MAPs in kinetochore- microtubule attachment (He et al., 2001; Lin et al., 2001; Cheeseman et al., 2001a; 3 Maiato et al. CLASP1 in the kinetochore Cheeseman et al., 2001b; Janke et al., 2002). This is currently a rapidly advancing area, though difficulties in finding metazoan homologues for several of the gene products have restricted further progress (but see Wigge and Kilmartin, 2001; Howe et al., 2001). The first protein shown to be involved in tethering kinetochores to microtubules was the kinesin-related protein CENP-E (Lombillo et al., 1995), which is now thought to report the status of kinetochore attachment to the metaphase checkpoint (Abrieu et al., 2000). Another protein potentially involved in microtubule plus end binding by the kinetochore is CLIP-170, which was first identified as a factor required for binding of endocytic transport vesicles to microtubules (Pierre et al., 1992). Loss of the S. pombe homolog of CLIP-170, tip1p, results in an increased frequency of microtubule catastrophes (Brunner and Nurse, 2000). The discovery that CLIP-170 localizes at prometaphase (though not metaphase) kinetochores (Dujardin et al., 1998) suggested that the protein might also be important for interactions of kinetochores with microtubules. Subsequent observations appeared to exclude the possibility that CLIP-170 is the prime microtubule-binding factor in the kinetochore (Dujardin et al., 1998), but it remains possible that the protein is important for initial interactions between kinetochores and microtubules. Other microtubule plus-end binding proteins, collectively referred to as +TIPs (Schuyler and Pellman, 2001) have been studied primarily due to their role in promoting polarized cell growth during interphase (McNally, 2001). The CLASP proteins, isolated through their ability to interact with CLIP-170/CLIP-115, were shown to associate with and stabilize microtubule plus ends at the leading edge during fibroblast motility, thereby promoting polarized growth (Akhmanova et al., 2001). Another family of microtubule plus end-binding proteins, the EB1 proteins 4 Maiato et al. CLASP1 in the kinetochore (Su et al., 1995), also appears to be involved in polarized growth of cells apparently through interaction with specific sites on the cell cortex (McNally, 2001). The role of these plus end-binding proteins in mitotic events has been relatively little studied. However APC is found at kinetochores (Kaplan et al., 2001), thereby suggesting a possible role for EB1 in chromosome segregation. A recent RNAi study of Drosophila EB1, confirmed that the protein is required for spindle assembly, particularly stabilization of astral microtubules (Rogers et al., 2002). Kinetochore fibres were detected in EB1-depleted cells, suggesting that this protein does not have an essential role in microtubule binding. Prior to the discovery of the CLASPs, genetic screens had identified a conserved non-motor MAP called variously MAST/Orbit in D. melanogaster (Lemos et al., 2000; Inoue et al., 2000) and Stu1 in S. cerevisiae (Pasqualone and Huffaker, 1994). These proteins are the fly and yeast homologues of the CLASPs. Mitotic phenotypes of MAST/Orbit mutants were complex, but suggested that the protein was essential for spindle assembly and function, possibly by promoting microtubule stability (Kline-Smith and Walczak, 2000). Subsequent RNAi and time-lapse microscopy analysis of MAST alleles revealed that the protein is required for chromosome alignment and maintenance of spindle bipolarity in mitosis (Maiato et al., 2002). The goal of the present work was to determine the role of the human CLASP1 protein in mitotic events. We have shown that CLASP1 is a component of the outer corona of kinetochore that binds to microtubules near their plus ends during mitosis. Interference with CLASP1 function causes the accumulation of monopolar spindles with chromosomes buried in the interior. Our functional analysis of these structures enables us to propose a single simple hypothesis that can explain the multitude of phenotypes seen after perturbation of CLASP1 5 Maiato et al. CLASP1 in the kinetochore function. We propose that CLASP1 is required for the normal regulation of microtubule dynamics at the kinetochore. Thus, CLASP1 is essential for one of the most remarkable and mysterious properties of the kinetochore: the ability to bind and influence the dynamic properties of spindle microtubules. 6 Maiato et al. CLASP1 in the kinetochore RESULTS CLASP1 exhibits dynamic changes in localization during mitosis Endogenous CLASP1 was localized in mitotic HeLa cells using an antibody directed against a peptide sequence specific to CLASP1 (Experimental Procedures). This antibody stained centrosomes and kinetochores in early mitotic cells (Figure 1A, B). Preimmune or peptide competition with the immune sera failed to give any specific staining in mitotic cells (data not shown). CLASP1 relocalized dramatically following the metaphase-anaphase transition, moving to the spindle midzone (Figure 1C), and ultimately concentrating in the midbody (Figure 1D). Staining of the centrosomes remained strong through anaphase, but declined in telophase. This staining pattern was confirmed by expression of GFP-CLASP1 and examination of fixed cells (Figure 1E-H). The pattern of localization by CLASP1 is reminiscent of the localization of CENP-E, a kinesin-related protein that has been implicated in kinetochore attachment to the mitotic spindle and in checkpoint signalling (Yen et al., 1992; Yao et al., 2000; Abrieu et al., 2000). However, the two proteins
Recommended publications
  • BSCB Newsletter 2017D
    2017 BSCB Newsletter BRITISH SOCIETY FOR CELL BIOLOGY Meet the new BSCB President Royal Opening of the Crick Meeting reports 2017 CONTENTS BSCB Newsletter News 2 Book reviews 7 Features 8 Meeting Reports 24 Summer students 30 Society Business 33 Editorial Welcome to the 2017 BSCB newsletter. After several meeting hosted several well received events for our Front cover: years of excellent service, Kate Nobes has stepped PhD and Postdoc members, which we discuss on The head of a Drosophila pupa. The developing down and handed the reins over to me. I’ve enjoyed page 5. Our PhD and Postdoc reps are working hard compound eye (green) is putting together this years’ newsletter. It’s been great to make the event bigger and better for next year! The composed of several hundred simple units called ommatidia to hear what our members have been up to, and I social events were well attended including the now arranged in an extremely hope you will enjoy reading it. infamous annual “Pub Quiz” and disco after the regular array. The giant conference dinner. Members will be relieved to know polyploidy cells of the fat body (red), the fly equivalent of the The 2016 BSCB/DB spring meeting, organised by our we aren’t including any photos from that here. mammalian liver and adipose committee members Buzz Baum (UCL), Silke tissue, occupy a big area of the Robatzek and Steve Royle, had a particular focus on In this issue, we highlight the great work the BSCB head. Cells and Tissue Architecture, Growth & Cell Division, has been doing to engage young scientists.
    [Show full text]
  • Effects of Activation of the LINE-1 Antisense Promoter on the Growth of Cultured Cells
    www.nature.com/scientificreports OPEN Efects of activation of the LINE‑1 antisense promoter on the growth of cultured cells Tomoyuki Honda1*, Yuki Nishikawa1, Kensuke Nishimura1, Da Teng1, Keiko Takemoto2 & Keiji Ueda1 Long interspersed element 1 (LINE‑1, or L1) is a retrotransposon that constitutes ~ 17% of the human genome. Although ~ 6000 full‑length L1s spread throughout the human genome, their biological signifcance remains undetermined. The L1 5′ untranslated region has bidirectional promoter activity with a sense promoter driving L1 mRNA production and an antisense promoter (ASP) driving the production of L1‑gene chimeric RNAs. Here, we stimulated L1 ASP activity using CRISPR‑Cas9 technology to evaluate its biological impacts. Activation of the L1 ASP upregulated the expression of L1 ASP‑driven ORF0 and enhanced cell growth. Furthermore, the exogenous expression of ORF0 also enhanced cell growth. These results indicate that activation of L1 ASP activity fuels cell growth at least through ORF0 expression. To our knowledge, this is the frst report demonstrating the role of the L1 ASP in a biological context. Considering that L1 sequences are desilenced in various tumor cells, our results indicate that activation of the L1 ASP may be a cause of tumor growth; therefore, interfering with L1 ASP activity may be a potential strategy to suppress the growth. Te human genome contains many transposable element-derived sequences, such as endogenous retroviruses and long interspersed element 1 (LINE-1, or L1). L1 is one of the major classes of retrotransposons, and it constitutes ~ 17% of the human genome1. Full-length L1 consists of a 5′ untranslated region (UTR), two open reading frames (ORFs) that encode the proteins ORF1p and ORF2p, and a 3′ UTR with a polyadenylation signal.
    [Show full text]
  • Integrating Single-Step GWAS and Bipartite Networks Reconstruction Provides Novel Insights Into Yearling Weight and Carcass Traits in Hanwoo Beef Cattle
    animals Article Integrating Single-Step GWAS and Bipartite Networks Reconstruction Provides Novel Insights into Yearling Weight and Carcass Traits in Hanwoo Beef Cattle Masoumeh Naserkheil 1 , Abolfazl Bahrami 1 , Deukhwan Lee 2,* and Hossein Mehrban 3 1 Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj 77871-31587, Iran; [email protected] (M.N.); [email protected] (A.B.) 2 Department of Animal Life and Environment Sciences, Hankyong National University, Jungang-ro 327, Anseong-si, Gyeonggi-do 17579, Korea 3 Department of Animal Science, Shahrekord University, Shahrekord 88186-34141, Iran; [email protected] * Correspondence: [email protected]; Tel.: +82-31-670-5091 Received: 25 August 2020; Accepted: 6 October 2020; Published: 9 October 2020 Simple Summary: Hanwoo is an indigenous cattle breed in Korea and popular for meat production owing to its rapid growth and high-quality meat. Its yearling weight and carcass traits (backfat thickness, carcass weight, eye muscle area, and marbling score) are economically important for the selection of young and proven bulls. In recent decades, the advent of high throughput genotyping technologies has made it possible to perform genome-wide association studies (GWAS) for the detection of genomic regions associated with traits of economic interest in different species. In this study, we conducted a weighted single-step genome-wide association study which combines all genotypes, phenotypes and pedigree data in one step (ssGBLUP). It allows for the use of all SNPs simultaneously along with all phenotypes from genotyped and ungenotyped animals. Our results revealed 33 relevant genomic regions related to the traits of interest.
    [Show full text]
  • Feedback Interactions Between Cell–Cell Adherens Junctions and Cytoskeletal Dynamics in Newt Lung Epithelial Cells□V Clare M
    Molecular Biology of the Cell Vol. 11, 2471–2483, July 2000 Feedback Interactions between Cell–Cell Adherens Junctions and Cytoskeletal Dynamics in Newt Lung Epithelial Cells□V Clare M. Waterman-Storer,*†‡ Wendy C. Salmon,†‡ and E.D. Salmon‡ *Department of Cell Biology and Institute for Childhood and Neglected Diseases, The Scripps Research Institute, La Jolla, California 92037; and ‡Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599 Submitted February 3, 2000; Revised April 20, 2000; Accepted May 11, 2000 Monitoring Editor: Jennifer Lippincott-Schwartz To test how cell–cell contacts regulate microtubule (MT) and actin cytoskeletal dynamics, we examined dynamics in cells that were contacted on all sides with neighboring cells in an epithelial cell sheet that was undergoing migration as a wound-healing response. Dynamics were recorded using time-lapse digital fluorescence microscopy of microinjected, labeled tubulin and actin. In fully contacted cells, most MT plus ends were quiescent; exhibiting only brief excursions of growth and shortening and spending 87.4% of their time in pause. This contrasts MTs in the lamella of migrating cells at the noncontacted leading edge of the sheet in which MTs exhibit dynamic instability. In the contacted rear and side edges of these migrating cells, a majority of MTs were also quiescent, indicating that cell–cell contacts may locally regulate MT dynamics. Using photoactivation of fluorescence techniques to mark MTs, we found that MTs in fully contacted cells did not undergo retrograde flow toward the cell center, such as occurs at the leading edge of motile cells. Time-lapse fluorescent speckle microscopy of fluorescently labeled actin in fully contacted cells revealed that actin did not flow rearward as occurs in the leading edge lamella of migrating cells.
    [Show full text]
  • NIH Public Access Author Manuscript Structure
    NIH Public Access Author Manuscript Structure. Author manuscript; available in PMC 2014 June 04. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Structure. 2013 June 4; 21(6): 939–950. doi:10.1016/j.str.2013.04.018. A Cryptic TOG Domain with a Distinct Architecture Underlies CLASP- Dependent Bipolar Spindle Formation Jonathan B. Leano1, Stephen L. Rogers2,3,4, and Kevin C. Slep2 1Dept. of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599 2Dept. of Biology, University of North Carolina, Chapel Hill, NC 27599 3Carolina Center for Genome Science, University of North Carolina, Chapel Hill, NC 27599 4Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599 SUMMARY CLASP is a key regulator of microtubule (MT) dynamics and bipolar mitotic spindle structure with CLASP mutants displaying a distinctive monopolar spindle phenotype. It has been postulated that cryptic TOG domains underlie CLASP’s ability regulate MT dynamics. Here, we report the crystal structure of the first cryptic TOG domain (TOG2) from human CLASP1, revealing the existence of a bona fide TOG array in the CLASP family. Strikingly, CLASP1 TOG2 exhibits a unique, convex architecture across the tubulin-binding surface that contrasts with the flat tubulin- binding surface of XMAP215 family TOG domains. Mutations in key, conserved TOG2 determinants abrogate the ability of CLASP mutants to rescue bipolar spindle formation in Drosophila cells depleted of endogenous CLASP. These findings highlight the common mechanistic use of TOG domains in XMAP215 and CLASP families to regulate MT dynamics, and suggest that differential TOG domain architecture may confer distinct functions to these critical cytoskeletal regulators.
    [Show full text]
  • Identification of Endogenous Adenomatous Polyposis Coli Interaction Partners 1 and Β-Catenin-Independent Targets by Proteomics
    Author Manuscript Published OnlineFirst on June 3, 2019; DOI: 10.1158/1541-7786.MCR-18-1154 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. 1 Identification of endogenous Adenomatous polyposis coli interaction partners 2 and E-catenin-independent targets by proteomics 3 4 Olesja Popow1,2, João A. Paulo2, Michael H. Tatham3, Melanie S. Volk5, Alejandro 5 Rojas-Fernandez4, Nicolas Loyer5, Ian P. Newton5, Jens Januschke5, Kevin M. 6 Haigis1,6, Inke Näthke5* 7 8 1Cancer Research Institute and Department of Medicine, Beth Israel Deaconess 9 Medical Center, Boston, MA 02215, United States 10 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, United States 11 3Centre for Gene Regulation and Expression, School of Life Sciences, University of 12 Dundee, Dundee, DD1 5EH, Scotland UK 13 4Center for Interdisciplinary Studies on the Nervous System (CISNe) and Institute of 14 Medicine, Universidad Austral de Chile, Valdivia, Chile 15 5Cell and Developmental Biology, School of Life Sciences, University of Dundee, 16 Dundee, DD1 5EH, Scotland UK 17 6Harvard Digestive Disease Center, Harvard Medical School, Boston, MA 02215, United 18 States 19 20 Running title: The APC interactome and its E-catenin-independent targets. 21 22 Keywords: Adenomatous polyposis coli, destruction complex, colorectal cancer, 23 proteomics, Misshapen-like kinase 1. 1 Downloaded from mcr.aacrjournals.org on October 3, 2021. © 2019 American Association for Cancer Research. Author Manuscript Published OnlineFirst on June 3, 2019; DOI: 10.1158/1541-7786.MCR-18-1154 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited.
    [Show full text]
  • CLASP Promotes Microtubule Bundling in Metaphase Spindle Independently of Ase1/PRC1 in Fission Yeast Hirohisa Ebina1, Liang Ji1,2 and Masamitsu Sato1,2,3,4,*
    © 2019. Published by The Company of Biologists Ltd | Biology Open (2019) 8, bio045716. doi:10.1242/bio.045716 RESEARCH ARTICLE CLASP promotes microtubule bundling in metaphase spindle independently of Ase1/PRC1 in fission yeast Hirohisa Ebina1, Liang Ji1,2 and Masamitsu Sato1,2,3,4,* ABSTRACT centrosomes or spindle pole bodies (SPBs). Spindle MTs are then Microtubules in the mitotic spindle are organised by microtubule- augmented by a number of MAPs promoting MT nucleation, associated proteins. In the late stage of mitosis, spindle microtubules controlling the dynamic property of MTs, and bundling MT are robustly organised through bundling by the antiparallel filaments. All of those processes are required to establish bipolarity microtubule bundler Ase1/PRC1. In early mitosis, however, it is not and the robust spindle structure, as failures in either process may well characterised as to whether spindle microtubules are actively result in unequal segregation of chromosomes (McDonald and bundled, as Ase1 does not particularly localise to the spindle at that McIntosh, 1993; McDonald et al., 1992). stage. Here we show that the conserved microtubule-associated MT bundling is particularly essential to stabilise and maintain the protein CLASP (fission yeast Peg1/Cls1) facilitates bundling of structural backbone of the spindle. MTs emanating from each spindle microtubules in early mitosis. The peg1 mutant displayed a spindle pole are connected through bundling mostly at the centre of fragile spindle with unbundled microtubules, which eventually the spindle, throughout mitosis. Several proteins promoting MT resulted in collapse of the metaphase spindle and abnormal bundling have been identified to date. segregation of chromosomes. Peg1 is known to be recruited to the The conserved non-motor MAP Ase1/PRC1 preferentially spindle by Ase1 to stabilise antiparallel microtubules in late mitosis.
    [Show full text]
  • BSCB Newsletter 2019A:BSCB Aut2k7
    2019 BSCB Magazine BRITISH SOCIETY FOR CELL BIOLOGY 2019 CONTENTS BSCB Magazine News 2 Book reviews 8 Features 9 Meeting Reports 21 Summer students 25 Society Business 32 Editorial Front cover: microscopic Welcome to the 2019 BSCB Magazine! This year Mustafa Aydogan (University of Oxford), as well as to structure of pectoral fin and Susana and Stephen are filling in for our Newsletter BSCB postdoc poster of the year winners Dr Anna hypaxial muscles of a zebrafish Editor Ann Wheeler. We hope you will enjoy this Caballe (University of Oxford) and Dr Agata Gluszek- Danio rerio larvae at four days year’s magazine! Kustusz (University of Edinburgh). post fertilization. The immunostaining highlights the This year we had a number of fantastic one day In 2019, we will have our jointly BSCB-BSDB organization of fast (red) and meetings sponsored by BSCB. These focus meetings Spring meeting at Warwick University from 7th–10th slow (green) myosins. All nuclei are great way to meet and discuss your science with April, organised by BSCB members Susana Godinho are highlighted in blue (hoechst). experts in your field and to strengthen your network of and Vicky Sanz-Moreno. The programme for this collaborators within the UK. You can read more about meeting, which usually provides a broad spectrum of these meetings in the magazine. If you have an idea themes, has a focus on cancer biology: cell for a focus one day meeting, check how to apply for migration/invasion, organelle biogenesis, trafficking, funding on page 4. Our ambassadors have also been cell-cell communication.
    [Show full text]
  • Noncoding Rnas As Novel Pancreatic Cancer Targets
    NONCODING RNAS AS NOVEL PANCREATIC CANCER TARGETS by Amy Makler A Thesis Submitted to the Faculty of The Charles E. Schmidt College of Science In Partial Fulfillment of the Requirements for the Degree of Master of Science Florida Atlantic University Boca Raton, FL August 2018 Copyright 2018 by Amy Makler ii ACKNOWLEDGEMENTS I would first like to thank Dr. Narayanan for his continuous support, constant encouragement, and his gentle, but sometimes critical, guidance throughout the past two years of my master’s education. His faith in my abilities and his belief in my future success ensured I continue down this path of research. Working in Dr. Narayanan’s lab has truly been an unforgettable experience as well as a critical step in my future endeavors. I would also like to extend my gratitude to my committee members, Dr. Binninger and Dr. Jia, for their support and suggestions regarding my thesis. Their recommendations added a fresh perspective that enriched our initial hypothesis. They have been indispensable as members of my committee, and I thank them for their contributions. My parents have been integral to my successes in life and their support throughout my education has been crucial. They taught me to push through difficulties and encouraged me to pursue my interests. Thank you, mom and dad! I would like to thank my boyfriend, Joshua Disatham, for his assistance in ensuring my writing maintained a logical progression and flow as well as his unwavering support. He was my rock when the stress grew unbearable and his encouraging words kept me pushing along.
    [Show full text]
  • A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family
    Rockefeller University Digital Commons @ RU Student Theses and Dissertations 2018 A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family Linda Molla Follow this and additional works at: https://digitalcommons.rockefeller.edu/ student_theses_and_dissertations Part of the Life Sciences Commons A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY A Thesis Presented to the Faculty of The Rockefeller University in Partial Fulfillment of the Requirements for the degree of Doctor of Philosophy by Linda Molla June 2018 © Copyright by Linda Molla 2018 A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY Linda Molla, Ph.D. The Rockefeller University 2018 APOBEC2 is a member of the AID/APOBEC cytidine deaminase family of proteins. Unlike most of AID/APOBEC, however, APOBEC2’s function remains elusive. Previous research has implicated APOBEC2 in diverse organisms and cellular processes such as muscle biology (in Mus musculus), regeneration (in Danio rerio), and development (in Xenopus laevis). APOBEC2 has also been implicated in cancer. However the enzymatic activity, substrate or physiological target(s) of APOBEC2 are unknown. For this thesis, I have combined Next Generation Sequencing (NGS) techniques with state-of-the-art molecular biology to determine the physiological targets of APOBEC2. Using a cell culture muscle differentiation system, and RNA sequencing (RNA-Seq) by polyA capture, I demonstrated that unlike the AID/APOBEC family member APOBEC1, APOBEC2 is not an RNA editor. Using the same system combined with enhanced Reduced Representation Bisulfite Sequencing (eRRBS) analyses I showed that, unlike the AID/APOBEC family member AID, APOBEC2 does not act as a 5-methyl-C deaminase.
    [Show full text]
  • Dissecting the Role of CLASP1 in Mammalian Development
    ESCOLA SUPERIOR DE TECNOLOGIA DA SAÚDE DO PORTO INSTITUTO POLITÉCNICO DO PORTO Ana Luísa Teixeira Ferreira Dissecting the Role of CLASP1 in Mammalian Development Dissertação submetida à Escola Superior de Tecnologia da Saúde do Porto para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Tecnologia Bioquímica em Saúde, realizada sob a orientação científica de Helder Maiato, PhD e co- orientação de Ana Lúcia Pereira, PhD e Rúben Fernandes, PhD. Setembro 2011 "Uma boa recordação talvez seja cá na Terra mais autêntica do que a felicidade." Alfred de Musset Dedicada à minha avó. ACKNOWLEDGEMENTS Acknowledgements I would like to thank those who, directly or indirectly, contributed to this work and helped me during this journey. I would like to express my special gratitude to: Helder Maiato (supervisor) Thank you for giving me so many opportunities and for being constantly showing me the bright side of science, even when things do not go as expected. Thank you for being always available when I needed, despite your busy schedule. Thank you for teaching me the importance of the persistence and hard work in science (which I’m still learning) and for your comprehension and patience with which you’ve guided me since I joined your group. Ana Lúcia Pereira (co-supervisor) Well, I think you’re the person who I have to thank most. I couldn’t expect a better tutor. You have taught me everything I have learned so far and I hope to deserve to be at your side in the future, because I really need you to teach me and to say “WORK”! Thank you for all the times that you “woke me up” when I got less focused and for being a reference of the hard work and perfectionism.
    [Show full text]
  • Snapshot: Nonmotor Proteins in Spindle Assembly Amity L
    SnapShot: Nonmotor Proteins in Spindle Assembly Amity L. Manning and Duane A. Compton Department of Biochemistry, Dartmouth Medical School, Hanover, NH and Norris Cotton Cancer Center, Lebanon, NH 03755, USA Protein Name Species Localization Function in Spindle Assembly DGT/augmin complex Human, fl y Spindle microtubules Boosts microtubule number by regulating γ-tubulin NuSAP Human, mouse, frog Central spindle Nucleation, stabilization, and bundling of microtubules near chromo- somes *RHAMM/HMMR Human, mouse, frog (XRHAMM) Centrosomes, spindle poles, spindle Nucleates and stabilizes microtubules at spindle poles; infl uences cyclin midbody B1 activity *TACC 1-3 Human, mouse, fl y (D-TACC), worm (TAC-1), Centrosomes, spindle poles Promotes microtubule nucleation and stabilization at spindle poles frog (Maskin), Sp (Alp7) Stabilization *TOGp Human, mouse, fl y (Minispindles/Msps), Centrosomes, spindle poles Promotes centrosome and spindle pole stability; promotes plus-end worm (ZYG-9), frog (XMAP215/Dis1), Sc microtubule dynamics Microtubule Nucleation/ Microtubule (Stu2), Sp (Dis1/Alp14) Astrin Human, mouse (Spag5) Spindle poles, kinetochores Crosslinks and stabilizes microtubules at spindle poles and kinetochores; stabilizes cohesin *HURP/DLG7 Human, mouse, fl y, worm, frog, Sc Kinetochore fi bers, most intense near Stabilizes kinetochore fi ber; infl uences chromosome alignment kinetochores *NuMA Human, mouse, fl y (Mud/Asp1), frog Spindle poles Formation/maintenance of spindle poles; inhibits APC/C at spindle poles *Prc1 Human, mouse,
    [Show full text]