New Records of Marine Algae from the Philippines
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The Identification of Functional, Sequestered, Symbiotic Chloroplasts
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 2006 The identification of functional, sequestered, symbiotic chloroplasts in Elysia clarki: A crucial step in the study of horizontally transferred, nuclear algal genes Nicholas E. Curtis University of South Florida Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the American Studies Commons Scholar Commons Citation Curtis, Nicholas E., "The identification of functional, sequestered, symbiotic chloroplasts in Elysia clarki: A crucial step in the study of horizontally transferred, nuclear algal genes" (2006). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/2496 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. The Identification of Functional, Sequestered, Symbiotic Chloroplasts in Elysia clarki: A Crucial Step in the Study of Horizontally Transferred, Nuclear Algal Genes by Nicholas E. Curtis A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Biology College of Arts and Sciences University of South Florida Major Professor: Sidney K. Pierce, Jr., Ph.D. Clinton J. Dawes, Ph.D. Kathleen M. Scott, Ph.D. Brian T. Livingston, Ph.D. Date of Approval: June 15, 2006 Keywords: Bryopsidales, kleptoplasty, sacoglossan, rbcL, chloroplast symbiosis Penicillus, Halimeda, Bryopsis, Derbesia © Copyright 2006, Nicholas E. Curtis Note to Reader The original of this document contains color that is necessary for understanding the data. The original dissertation is on file with the USF library in Tampa, Florida. -
An Annotated List of Marine Chlorophyta from the Pacific Coast of the Republic of Panama with a Comparison to Caribbean Panama Species
Nova Hedwigia 78 1•2 209•241 Stuttgart, February 2004 An annotated list of marine Chlorophyta from the Pacific Coast of the Republic of Panama with a comparison to Caribbean Panama species by Brian Wysor The University of Louisiana at Lafayette, Department of Biology PO Box 42451, Lafayette, LA 70504-2451, USA. Present address: Bigelow Laboratory for Ocean Sciences PO Box 475, McKown Point, West Boothbay Harbor, ME 04575, USA. With 21 figures, 3 tables and 1 appendix Wysor, B. (2004): An annotated list of marine Chlorophytafrom the Pacific Coast of the Republic of Panama with a comparison to Caribbean Panama species. - Nova Hedwigia 78: 209-241. Abstract: Recent study of marine macroalgal diversity of the Republic of Panama has led to a substantial increase in the number of seaweed species documented for the country. In this updated list of marine algae based on collections made in 1999 and reports from the literature, 44 Chlorophyta (43 species and one variety) are documented for the Pacific coast of Panama, including 27 new records. A comparison of chlorophyte diversity along Caribbean and Pacific coasts revealed greater diversity at nearly all taxonomic levels in the Caribbean flora. Differences in environmentalregime (e.g., absence of sea grasses, lower abundance and diversity of hermatypic corals, and greater tidal range along the Pacific coast) explained some of the discrepancy in diversity across the isthmus. Fifteen taxa were common to Caribbean and Pacific coasts, but the number of amphi-isthmian taxa nearly doubled when taxa from nearby floras were includedin the estimate. These taxa may represent daughter populations of a formerly contiguouspopulation that was severed by the emerging Central American Isthmus. -
Reassessment of the Classification of Bryopsidales (Chlorophyta) Based on T Chloroplast Phylogenomic Analyses ⁎ Ma
Molecular Phylogenetics and Evolution 130 (2019) 397–405 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Reassessment of the classification of Bryopsidales (Chlorophyta) based on T chloroplast phylogenomic analyses ⁎ Ma. Chiela M. Cremena, , Frederik Leliaertb,c, John Westa, Daryl W. Lamd, Satoshi Shimadae, Juan M. Lopez-Bautistad, Heroen Verbruggena a School of BioSciences, University of Melbourne, Parkville, 3010 Victoria, Australia b Botanic Garden Meise, 1860 Meise, Belgium c Department of Biology, Phycology Research Group, Ghent University, 9000 Ghent, Belgium d Department of Biological Sciences, The University of Alabama, 35487 AL, USA e Faculty of Core Research, Natural Science Division, Ochanomizu University, 2-1-1 Otsuka, Bunkyo, Tokyo 112-8610, Japan ARTICLE INFO ABSTRACT Keywords: The Bryopsidales is a morphologically diverse group of mainly marine green macroalgae characterized by a Siphonous green algae siphonous structure. The order is composed of three suborders – Ostreobineae, Bryopsidineae, and Seaweeds Halimedineae. While previous studies improved the higher-level classification of the order, the taxonomic Chloroplast genome placement of some genera in Bryopsidineae (Pseudobryopsis and Lambia) as well as the relationships between the Phylogeny families of Halimedineae remains uncertain. In this study, we re-assess the phylogeny of the order with datasets Ulvophyceae derived from chloroplast genomes, drastically increasing the taxon sampling by sequencing 32 new chloroplast genomes. The phylogenies presented here provided good support for the major lineages (suborders and most families) in Bryopsidales. In Bryopsidineae, Pseudobryopsis hainanensis was inferred as a distinct lineage from the three established families allowing us to establish the family Pseudobryopsidaceae. The Antarctic species Lambia antarctica was shown to be an early-branching lineage in the family Bryopsidaceae. -
The Marine Macroalgae of Cabo Verde Archipelago: an Updated Checklist
Arquipelago - Life and Marine Sciences ISSN: 0873-4704 The marine macroalgae of Cabo Verde archipelago: an updated checklist DANIELA GABRIEL AND SUZANNE FREDERICQ Gabriel, D. and S. Fredericq 2019. The marine macroalgae of Cabo Verde archipelago: an updated checklist. Arquipelago. Life and Marine Sciences 36: 39 - 60. An updated list of the names of the marine macroalgae of Cabo Verde, an archipelago of ten volcanic islands in the central Atlantic Ocean, is presented based on existing reports, and includes the addition of 36 species. The checklist comprises a total of 372 species names, of which 68 are brown algae (Ochrophyta), 238 are red algae (Rhodophyta) and 66 green algae (Chlorophyta). New distribution records reveal the existence of 10 putative endemic species for Cabo Verde islands, nine species that are geographically restricted to the Macaronesia, five species that are restricted to Cabo Verde islands and the nearby Tropical Western African coast, and five species known to occur only in the Maraconesian Islands and Tropical West Africa. Two species, previously considered invalid names, are here validly published as Colaconema naumannii comb. nov. and Sebdenia canariensis sp. nov. Key words: Cabo Verde islands, Macaronesia, Marine flora, Seaweeds, Tropical West Africa. Daniela Gabriel1 (e-mail: [email protected]) and S. Fredericq2, 1CIBIO - Research Centre in Biodiversity and Genetic Resources, 1InBIO - Research Network in Biodiversity and Evolutionary Biology, University of the Azores, Biology Department, 9501-801 Ponta Delgada, Azores, Portugal. 2Department of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana 70504-3602, USA. INTRODUCTION Schmitt 1995), with the most recent checklist for the archipelago published in 2005 by The Republic of Cabo Verde is an archipelago Prud’homme van Reine et al. -
318177450-Oa
DR. CHRIS JACKSON (Orcid ID : 0000-0001-5785-6465) Article type : Regular Article Phylogenetic position of the coral symbiont Ostreobium (Ulvophyceae) inferred from chloroplast genome data1 Heroen Verbruggen School of BioSciences, University of Melbourne, Melbourne, Victoria, 3010, Australia Vanessa R. Marcelino School of BioSciences, University of Melbourne, Melbourne, Victoria, 3010, Australia Michael D. Guiry AlgaeBase, Ryan Institute, National University of Ireland, Galway, H91 TK33, Ireland M. Chiela M. Cremen School of BioSciences, University of Melbourne, Melbourne, Victoria, 3010, Australia Christopher J. Jackson2 School of BioSciences, University of Melbourne, Melbourne, Victoria, 3010, Australia 1Received. Accepted. 2Author for correspondence: email [email protected] Running title: Ostreobium chloroplast phylogenomics Author Manuscript This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/jpy.12540-16-224 This article is protected by copyright. All rights reserved Editorial Responsibility: L. Graham (Associate Editor) Abstract The green algal genus Ostreobium is an important symbiont of corals, playing roles in reef decalcification and providing photosynthates to the coral during bleaching events. A chloroplast genome of a cultured strain of Ostreobium was available, but low taxon sampling and Ostreobium's early-branching nature left doubt about its phylogenetic position. Here we generate and describe chloroplast genomes from four Ostreobium strains as well as Avrainvillea mazei and Neomeris sp., strategically sampled early-branching lineages in the Bryopsidales and Dasycladales, respectively. At 80,584 bp, the chloroplast genome of Ostreobium sp. -
Lobban Et Al 2003
Micronesica 35-36:54-99. 2003 Revised checklist of benthic marine macroalgae and seagrasses of Guam and Micronesia. CHRISTOPHER S. LOBBAN Division of Natural Sciences University of Guam Mangilao, GU 96923 ROY T. TSUDA Marine Laboratory University of Guam, Mangilao, GU 96923 Abstract— We have compiled the new records and nomenclatural changes since Tsuda & Wray’s 1977 checklist and Tsuda’s 1981a addendum. There are now 653 species of benthic marine algae reported from Micronesia: 85 species of Cyanophyta, 324 Rhodophyta, 58 Heterokontophyta (including 54 Phaeophyceae), and 186 Chlorophyta. We document here 40 new records for Guam. The total for Guam is now 237 species: 26 Cyanophyta, 109 Rhodophyta, 31 Heterokontophyta (including 27 Phaeophyceae), and 71 Chlorophyta. We have included 3 Pelagophyceae and 1 Bacillariophyceae (diatom) that form macroscopic colonies, as well as the 10 species of seagrasses (Magnoliophyta) that occur in the region. Introduction There has been a modest amount of phycological activity in Micronesia in the decades since Tsuda & Wray (1977) published a checklist of seaweeds that had been reported from the islands in the region. Some additions to the list were published by Tsuda (1981a). Tsuda (1981b) also printed a checklist for Guam, which included a number of species not included in either of his other checklists. Recent work in Pohnpei by Hodgson & McDermid (2000) and McDermid et al. (2002) added many new records, particularly of subtidal Rhodophyta. We document here 40 new records from Guam, including those from technical reports by Tsuda (1981b, 1992, 1993), 22 of which are new for Micronesia. Additionally, there has been much phycological work, chiefly outside the region, that improves our understanding of the species and their systematic positions. -
Constancea 83.8: Checklist of the Benthic Marine Algae Known to Puerto Rico
Constancea 83.8: Checklist of the Benthic Marine Algae Known to Puerto Rico Constancea 83, 2002 University and Jepson Herbaria P.C. Silva Festschrift A Checklist of the Benthic Marine Algae Known to Puerto Rico, Second Revision David L. Ballantine and Nilda E. Aponte Department of Marine Sciences University of Puerto Rico Mayagüez, Puerto Rico U.S.A. 00681 http://ucjeps.berkeley.edu/constancea/83/ballantine_aponte/checklist.html (1 of 3)9/14/2006 6:10:37 AM Constancea 83.8: Checklist of the Benthic Marine Algae Known to Puerto Rico Bonnie Bower Dennis The Checklist: ● Rhodophyta ● Heterokontophyta ● Chlorophyta ● Bibliography ● Notes This checklist is originally based on: Ballantine, D.L. and N.E. Aponte. 1997. A revised checklist of the benthic marine algae known to Puerto Rico. Caribbean Journal of Science, 33: 150–179. The first complete list of the marine benthic algal flora of Puerto Rico was compiled by Almodóvar and Ballantine (1983). That list was revised by Ballantine and Aponte (1997a). Numerous nomenclatural changes were incorporated. The present revision includes newly reported species records for Puerto Rico as well as systematic updates reported by Wynne (1998). Four hundred ninety-two species of algae, including macroscopic Chrysophyceae and Xanthophyceae but excluding Cyanophyta, are now listed from Puerto Rico. Among the major divisions of algae, the flora consists of 59% Rhodophyta, 13% Phaeophyta, and 28% Chlorophyta. Puerto Rico is centrally situated in an arc of islands comprising the West Indies. The Greater Antilles, of which Puerto Rico is the eastern-most island, define the northern boundary of the Caribbean Sea; thus, the north coast of Puerto Rico abuts the Atlantic Ocean while the remaining coasts are technically Caribbean. -
Phylogenetic Position of the Coral Symbiont Ostreobium Inferred from Chloroplast Genome Data
Phylogenetic position of the coral symbiont Ostreobium inferred from chloroplast genome data Heroen Verbruggen1*, Vanessa R. Marcelino1, Michael D. Guiry2, M. Chiela M. Cremen1, Christopher J. Jackson1 1 School of BioSciences, University of Melbourne, Victoria 3010, Australia 2 AlgaeBase, Ryan Institute, National University of Ireland, Galway, H91 TK33, Ireland * Author for correspondence: [email protected] Abstract: The green algal genus Ostreobium is an important symbiont of corals, playing roles in reef decalcification and providing photosynthates to the coral during bleaching events. A chloroplast genome of a cultured strain of Ostreobium was available, but low taxon sampling and Ostreobium's early-branching nature left doubt about its phylogenetic position. Here, we generate and describe chloroplast genomes from four Ostreobium strains as well as Avrainvillea mazei and Neomeris sp., strategically sampled early- branching lineages in the Bryopsidales and Dasycladales respectively. At 80,584 bp, the chloroplast genome of Ostreobium sp. HV05042 is the most compact yet found in the Ulvophyceae. The Avrainvillea chloroplast genome is ~94 kbp and contains introns in infA and cysT that have nearly complete sequence identity except for an open reading frame (ORF) in infA that is not present in cysT. In line with other bryopsidalean species, it also contains regions with possibly bacteria-derived ORFs. The Neomeris data did not assemble into a canonical circular chloroplast genome but a large number of contigs containing fragments of chloroplast genes and showing evidence of long introns and intergenic regions, and the Neomeris chloroplast genome size was estimated to exceed 1.87 Mb. Chloroplast phylogenomics and 18S nrDNA data showed strong support for the Ostreobium lineage being sister to the remaining Bryopsidales. -
Bryopsidalesclassificationcpge
REASSESSMENT OF THE CLASSIFICATION OF BRYOPSIDALES (CHLOROPHYTA) BASED ON CHLOROPLAST PHYLOGENOMIC ANALYSES Ma. Chiela M. Cremen1, Frederik Leliaert2,3, John West1, Daryl W. Lam4, Satoshi Shimada5, Juan M. Lopez-Bautista4, and Heroen Verbruggen1 1 School of BioSciences, University of Melbourne, Parkville, 3010 Victoria, Australia 2 Botanic Garden Meise, 1860 Meise, Belgium 3 Department of Biology, Phycology Research Group, Ghent University, 9000 Ghent, Belgium 4 Department of Biological Sciences, The University of Alabama, 35487 Alabama, U.S.A. 5 Faculty of Core Research, Natural Science Division, Ochanomizu University, 2-1-1 Otsuka, Bunkyo, Tokyo 112-8610, Japan ABSTRACT The Bryopsidales is a morphologically diverse group of mainly marine green macroalgae characterized by a siphonous structure. The order is comprisedcomposed of three suborders – Ostreobineae, Bryopsidineae, and Halimedineae. While previous studies improved the higher-level classification of the order, the taxonomic placement of some genera in Bryopsidineae (Pseudobryopsis and Lambia) as well as the relationships between the families of Halimedineae remains uncertain. In this study, we re-assess the phylogeny of the order with datasets derived from chloroplast genomes, drastically increasing the taxon sampling by sequencing 32 new chloroplast genomes. The phylogenies presented here provided good support for the major lineages (suborders and most families) in Bryopsidales. In Bryopsidineae, Pseudobryopsis hainanensis was inferred as a distinct lineage from the three established families allowing us to establish the family Pseudobryopsidaceae. The Antarctic species Lambia antarctica was shown to be an early-branching lineage in the family Bryopsidaceae. In Halimedineae, we revealed several inconsistent phylogenetic positions of macroscopic taxa, and several entirely new lineages of microscopic species. -
PJS Special Issue Ang Et Al.Indd
Philippine Journal of Science 142: 5-49, Special Issue ISSN 0031 - 7683 Date Received: 2 May 2013 A Verification of Reports of Marine Algal Species from the Philippines Put O. Ang, Jr., Sin Man Leung, and Mei Mei Choi Marine Science Laboratory School of Life Sciences, Chinese University of Hong Kong Shatin, N.T., Hong Kong SAR, CHINA Records of marine macroalgae reported from the Philippines were checked against AlgaeBase, the international database for algal nomenclatures, and Index Nominum Algarum (INA) Bibliographia Phycologica Universalis of the University of California at Berkeley Silva Center for Phycological Documentation to verify their present nomenclature, status of taxonomy and bibliographic reference. To date, 306 names of taxa (including species, varieties and forms) of greens (Chlorophyta), 234 names of taxa of browns (Ochrophyta, Phaeophyceae) and 751 names of taxa of reds (Rhodophyta), or a total of 1291 published names of taxa have been reported from the Philippines. Of these, 231 taxa representing 197 species in 20 families for green algae, 171 taxa representing 153 species in 10 families for brown algae, and 564 taxa representing 543 species in 52 families for red algae are considered valid records listed with their currently accepted names. All in all, 966 currently accepted taxa, representing 893 species in 82 families of marine macroalgae have been reported from the Philippines. Among the greens, 15 taxa have their type localities in the Philippines. This number is 40 for the browns and 33 for the reds. Proportionally, this is 6.5% of the total for the greens, 23.4% for the browns and 5.9% for the reds. -
Checklist and Bibliography of the Marine Benthic Algae from the Mariana Islands
CHECKLIST AND BIBLIOGRAPHY OF THE MARINE BENTHIC ALGAE FROM THE MARIANA ISLANDS (GUAM AND CNMI) ROY T. TSUDA UNIVERSITY OF GUAM MARINE LABORATORY Technical Report No. 107 March 2003 Checklist and Bibliography of the Marine Benthic Algae from the Mariana Islands (Guam and CNMI) Roy T. Tsuda University of Guam Marine Laboratory UOG Station, Mangilao, Guam 96923 Technical Report No. 107 March 2003 (Revised June 2004) Cover: Halimeda macroloba Decaisne, Pago Bay, Guam, 19 cm high including holdfast. ii TABLE OF CONTENTS Page INTRODUCTION 1 SPECIES AND REFERENCES 3 Division Cyanophyta 3 Class Cyanophyceae 3 Order Chroococcales 3 Family Entophysalidaceae Family Microcystaceae Family Synechococcaceae Order Oscillatoriales 4 Family Oscillatoriaceae Family Phormidiaceae Family Pseudanabaenaceae Family Schizothrichaceae Order Nostocales 6 Family Nostocaceae Family Rivulariaceae Family Scytonemataceae Division Chlorophyta 6 Class Chlorophyceae 6 Order Ulvales 6 Family Ulvaceae Order Cladophorales 7 Family Anadyomenaceae Family Cladophoraceae Family Siphonocladaceae Family Valoniaceae Order Bryopsidales 10 Family Bryopsidaceae Family Caulerpaceae Family Codiaceae Family Halimedaceae iii Page Family Ostreobiaceae Family Udoteaceae Order Dasycladales 16 Family Dasycladaceae Family Polyphysaceae Division Phaeophyta 17 Class Phaeophyceae 17 Order Ectocarpales 17 Family Ectocarpaceae Family Ralfsiaceae Order Sphacelariales 18 Family Sphacelariaceae Order Dictyotales 18 Family Dictyotaceae Order Scytosiphonales 20 Family Chnoosporaceae Family Scytosiphonaceae -
Updated Checklist of the Benthic Marine Macroalgae of the Philippines
Philippine Journal of Science 150 (S1): 29-92, Special Issue on Biodiversity ISSN 0031 - 7683 Date Received: 14 Sep 2020 Updated Checklist of the Benthic Marine Macroalgae of the Philippines John Michael L. Lastimoso and Wilfred John E. Santiañez* G.T. Velasquez Phycological Herbarium and The Marine Science Institute College of Science, University of the Philippines Diliman, Quezon City 1101 Philippines Records of taxa of benthic marine macroalgae in the Philippines continue to increase as molecular- based biodiversity and systematics research involving seaweed specimens collected from various localities in the country continue to grow. Several molecular systematics studies on seaweeds within the last decade also resulted in taxonomic, nomenclatural, and classification changes, consequently affecting our knowledge and understanding of the biodiversity of the Philippine seaweed flora. Moreover, global efforts to make biodiversity resources that are deposited in various herbaria openly available through online databases provide a good opportunity to reassess our current foundational biodiversity knowledge on these ecologically and economically important marine resources. Herein, we provide an updated checklist of Philippine seaweeds by integrating results of recent biodiversity and systematics studies and by perusing open-access records of seaweeds collected from the Philippines that are deposited in foreign herbaria and/or found in online databases. We report a total of 1,065 seaweed taxa in the Philippines; this is composed primarily of 600 red seaweed taxa (Florideophyceae and Bangiophyceae, Rhodophyta), followed by 272 green seaweed taxa (Ulvophyceae, Chlorophyta), and by 193 brown seaweed taxa (Phaeophyceae, Ochrophyta). We added a total of 104 new records (including recently described species) to the latest checklist on Philippine seaweeds in 2013, more than half of which were derived from records of the collections deposited in foreign herbaria.