<I>Pelodytes Punctatus</I>
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Genetic Analysis of Signal Peptides in Amphibian Antimicrobial Secretions
Journal of Genetics, Vol. 97, No. 5, December 2018, pp. 1205–1212 © Indian Academy of Sciences https://doi.org/10.1007/s12041-018-1018-5 RESEARCH ARTICLE Genetic analysis of signal peptides in amphibian antimicrobial secretions L. O. PÉREZ1, N. L. CANCELARICH2, S. AGUILAR2,3,N.G.BASSO4 and M. M. MARANI2∗ 1Instituto Patagónico de Ciencias Sociales y Humanas (IPCSH), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Puerto Madryn, Argentina 2Instituto Patagónico para el Estudio de Ecosistemas Continentales (IPEEC),Puerto Madryn, Argentina 3Facultad de Ciencias Naturales, Sede Puerto Madryn, Universidad Nacional de la Patagonia San Juan Bosco, 3051 Brown Boulevard, Puerto Madryn, Argentina 4Instituto de Diversidad y Evolución Austral (IDEAus), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), 2915 Brown Boulevard, Puerto Madryn, Argentina *For correspondence. E-mail: [email protected]. Received 22 February 2018; accepted 1 May 2018; published online 7 November 2018 Abstract. Amphibian secretion is an important source of bioactive molecules that naturally protect the skin against noxious microorganisms. Collectively called antimicrobial peptides (AMPs), these molecules have a wide spectrum of action, targeting viruses, bacteria and fungi. Like many membrane and secreted proteins, AMPs have cleavable signal sequences that mediate and translocate the nascent polypeptide chains into the endoplasmic reticulum. Although it is accepted that the signal peptides (SPs) are simple and interchangeable, there is neither sequence nor structure that is conserved among all gene families. They derived from a common ancestor but developed different traits as they adapt to distinct environmental pressures. The aim of this study was to provide an overview of the diversity of SPs of the frog, taking into account reported cDNA sequences and the evolutionary relationship among them. -
Rampant Tooth Loss Across 200 Million Years of Frog Evolution
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.04.429809; this version posted February 6, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Rampant tooth loss across 200 million years of frog evolution 2 3 4 Daniel J. Paluh1,2, Karina Riddell1, Catherine M. Early1,3, Maggie M. Hantak1, Gregory F.M. 5 Jongsma1,2, Rachel M. Keeffe1,2, Fernanda Magalhães Silva1,4, Stuart V. Nielsen1, María Camila 6 Vallejo-Pareja1,2, Edward L. Stanley1, David C. Blackburn1 7 8 1Department of Natural History, Florida Museum of Natural History, University of Florida, 9 Gainesville, Florida USA 32611 10 2Department of Biology, University of Florida, Gainesville, Florida USA 32611 11 3Biology Department, Science Museum of Minnesota, Saint Paul, Minnesota USA 55102 12 4Programa de Pós Graduação em Zoologia, Universidade Federal do Pará/Museu Paraense 13 Emilio Goeldi, Belém, Pará Brazil 14 15 *Corresponding author: Daniel J. Paluh, [email protected], +1 814-602-3764 16 17 Key words: Anura; teeth; edentulism; toothlessness; trait lability; comparative methods 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.04.429809; this version posted February 6, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. -
BOA5.1-2 Frog Biology, Taxonomy and Biodiversity
The Biology of Amphibians Agnes Scott College Mark Mandica Executive Director The Amphibian Foundation [email protected] 678 379 TOAD (8623) Phyllomedusidae: Agalychnis annae 5.1-2: Frog Biology, Taxonomy & Biodiversity Part 2, Neobatrachia Hylidae: Dendropsophus ebraccatus CLassification of Order: Anura † Triadobatrachus Ascaphidae Leiopelmatidae Bombinatoridae Alytidae (Discoglossidae) Pipidae Rhynophrynidae Scaphiopopidae Pelodytidae Megophryidae Pelobatidae Heleophrynidae Nasikabatrachidae Sooglossidae Calyptocephalellidae Myobatrachidae Alsodidae Batrachylidae Bufonidae Ceratophryidae Cycloramphidae Hemiphractidae Hylodidae Leptodactylidae Odontophrynidae Rhinodermatidae Telmatobiidae Allophrynidae Centrolenidae Hylidae Dendrobatidae Brachycephalidae Ceuthomantidae Craugastoridae Eleutherodactylidae Strabomantidae Arthroleptidae Hyperoliidae Breviceptidae Hemisotidae Microhylidae Ceratobatrachidae Conrauidae Micrixalidae Nyctibatrachidae Petropedetidae Phrynobatrachidae Ptychadenidae Ranidae Ranixalidae Dicroglossidae Pyxicephalidae Rhacophoridae Mantellidae A B † 3 † † † Actinopterygian Coelacanth, Tetrapodomorpha †Amniota *Gerobatrachus (Ray-fin Fishes) Lungfish (stem-tetrapods) (Reptiles, Mammals)Lepospondyls † (’frogomander’) Eocaecilia GymnophionaKaraurus Caudata Triadobatrachus 2 Anura Sub Orders Super Families (including Apoda Urodela Prosalirus †) 1 Archaeobatrachia A Hyloidea 2 Mesobatrachia B Ranoidea 1 Anura Salientia 3 Neobatrachia Batrachia Lissamphibia *Gerobatrachus may be the sister taxon Salientia Temnospondyls -
Herpetology 101 Aims to Teach Students the Basics of Reptile and Amphibian Biology While Instilling an Interest in Life and Animal Sciences
Splash Herpetology Goals: Herpetology 101 aims to teach students the basics of reptile and amphibian biology while instilling an interest in life and animal sciences. Materials Requested: We’re requesting a frog life cycle replica, a coral snake replica, and a red eared slider replica. These will cost $29.97, but it is expected to be a little over $30 with tax and shipping included (we will pay the rest if we need to). We would like to use these replicas to teach about animals we don’t have—for example, we obviously do not have a venomous, deadly coral snake, so we would like to have a replica to show people what to look for. We would also like a replica aquatic turtle to demonstrate the differences between terrestrial and aquatic chelonians, and a series of frog/tadpole replicas to demonstrate the amphibian life cycle. Class outline is below. We’ll spend our time going over the below information and observing and handling live reptiles and amphibians! ● Introduction to us and WISE ○ Who we are on campus ○ What animals we work with (herps and inverts) ● Introduction to reptiles and amphibians ○ Similarities: ectotherms, no fur or feathers, oviparous ○ Differences: amphibians have an aquatic larval stage, skin versus scales, some ovoviviparous reptiles versus all oviparous amphibs, amphibs poisonous while reptiles generally venomous, reptile eggs are leathery ● Amphibian biology ○ Study of amphibians: “Batrachology” ○ 7,000 species, 90% of which are frogs ○ Ecological indicator species ■ Skin is a secondary/primary respiratory organ ■ -
Chondrocranial and Oral Morphology of Pipoid Frogs Charles Christopher Swart
University of Richmond UR Scholarship Repository Master's Theses Student Research 1998 Chondrocranial and oral morphology of pipoid frogs Charles Christopher Swart Follow this and additional works at: http://scholarship.richmond.edu/masters-theses Part of the Biology Commons Recommended Citation Swart, Charles Christopher, "Chondrocranial and oral morphology of pipoid frogs" (1998). Master's Theses. Paper 1065. This Thesis is brought to you for free and open access by the Student Research at UR Scholarship Repository. It has been accepted for inclusion in Master's Theses by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. Chondrocranial and Oral Morphology of Pipoid Frogs by Charles Christopher Swart I certify that I have read this thesis and find that, in scope and quality, it satisfies the requirements for the degree of Master of Science. Dr.Joi<rlttayden Dr.G~;?j_~ T Other Faculty Members: TT Chondrocranial and Oral Morphology of Pipoid Frogs Charles Christopher Swart Masters of Science in Biology University of Richmond, 1998 Thesis Director: Rafael 0. de Sa Abstract. The Pipoidea are a diverse group of frogs. Their diversity is demonstrated in their morphology, ecology, and behavior. One pipoid species, Xenopus laevis, has been used as a model system of developmental, physiological, and molecular studies of vertebrates. My work has focused on the developmental morphology of the chondrocranium and oral morphology of four pipoid taxa: Hymenochirus boettgeri, Rhinophrynus dorsalis, Pipa carvalhoi, and Xenopus laevis. Previous studies have suggested that the Anura may be diphyletic based on the unique characteristics of the chondrocanial morphology of pipoids. -
Diversity of Diversity of Anura
Diversity of Anura WFS 433/533 1/24/2013 Lecture goal To familiarize students with the different families of the order anura. To familiarize students with aspects of natural history and world distribution of anurans Required readings: Wells: pp. 15-41 http://amphibiaweb.org/aw/index.html Lecture roadmap Characteristics of Anurans Anuran Diversity Anuran families, natural history and world distribution 1 What are amphibians? These foul and loathsome animals are abhorrent because of their cold body, pale color, cartilaginous skeleton, filthy skin, fierce aspect, calculating eye, offensive smell, harsh voice, squalid habitation, and terrible venom; and so their Creator has not exerted his powers to make many of them. Carl von Linne (Linnaeus) Systema Naturae (1758) What are frogs? A thousand splendid suns, a million moons, a billion twinkle stars are nothing compared to the eyes of a frog in the swamp —Miss Piggy about Kermit, in Larry king live, 1993 Diversity of anurans Global Distribution 30 Families 4963 spec ies Groups: •Archaeobatrachia (4 families) •Mesobatrachia (5 families) 30 Families •Neobatrachia (all other families) 2 No. of Known Species in Number of Species Number of Species in Family World in the United States? Tennessee? Allophrynidae 10 0 Arthroleptidae 78 0 0 Ascaphidae 22 0 Bombinatoridae 11 0 0 Brachycephalidae 60 0 Bufonidae 457 23 2 Centrolenidae 139 0 0 Dendrobatidae 219 1* 0 Discoglossidae 11 0 0 Heleophrynidae 60 0 Hemisotidae 90 0 Hylidae 851 29* 10 Hyperoliidae 253 0 0 Leiopelmatidae 40 0 30 families Leptodactylidae -
Pliocene Frogs from Langebaanweg, Western Cape Province, South Africa
CORE Metadata, citation and similar papers at core.ac.uk Provided by Stellenbosch University SUNScholar Repository News & Views South African Journal of Science 99, March/April 2003 123 ers, are difficult to distinguish from those of the more slender of the Ranidae. How- Pliocene frogs from Langebaanweg, ever, several bones at Langebaanweg (comprising femur, humerus, ilium frag- Western Cape Province, South Africa ment, scapula, and sacrum) indicate either a third, gracile ranid genus or, more likely, a hyperoliid (compare Figs 2e and D. Eduard van Dijk* 2f). A very slender, nearly straight femur with a distinct, but short, posterior proxi- mal ridge is probably hyperoliid. The HE VARSWATER FORMATION AT LANGE- Ranoidea). Both families are present as femora of Pipidae, Bufonidae, Brevicipi- Tbaanweg, Western Cape Province, South fossils at Langebaanweg. tidae and most Ranidae have distinct Africa, is known particularly for its Late In the Pipidae (Fig. 1a), the transverse curvature; a ridge is rare in ranids, except Miocene–Early Pliocene mammalian and processes (diapophyses) are much ex- abundant avian fossils. Amphibian bones the genera of very small size. Bones of from the site are, like the avian bones, notable panded, with parallel lateral edges (rarely frogs of the only genus of the hyloidean for their variety, surpassed in numbers of fam- intact in fossils), and the paired facets family Heleophrynidae in southern ilies and genera by no site in Africa and few (prezygapophyses), which articulate with Africa are mostly similar to those of sites in the world. The bones were transported the presacral vertebrae, have longitudinal the Bufonidae. However, a distinctive by a river system from a variety of habitats and grooves. -
Tennessee Anuran Identification
Identification of Tennessee Anurans Hyla versicolor Matthew J. Gray College of Agricultural Sciences and Natural Resources University of Tennessee-Knoxville Suborder Suborder Mesobatrachia Anuran Families Neobatrachia Order Anura Bufonidae Scaphiopodidae Microhylidae 2 1 1 True Toads American Spadefoots Narrow-mouthed Toads Hylidae Ranidae 10 7 Tree Frogs True Frogs Morphological Characteristics Ranidae, Hylidae Bufonidae Glanular glands 1 Family American toad Bufonidae (Anaxyrus americanus) Eggs: 1-2 strings (4,000-12,000 eggs) >10 m length Breeding Call •Long, musical trill (constant) Breeding Season •Early (March) Characteristics: SVL = 3” • Parotoid glands rarely touch cranial crest • 1-2 glanular glands “warts” per dark spot Family American toad Bufonidae (Anaxyrus americanus) Distribution: EM http://www.apsu.edu/amatlas/ • Eastern United States • Statewide Family Fowler’s toad Bufonidae (Anaxyrus fowleri) Eggs: 1-2 strings (5,000-10,000 eggs) <3 m length Breeding Call •Nasal "w-a-a-h" •Sheep blea ting or baby crying Breeding Season •Mid (May) Characteristics: SVL = 2.5” • Parotoid glands touch cranial crest • >3 glanular glands “warts” per dark spot 2 Family Fowler’s toad Bufonidae (Anaxyrus fowleri) Distribution: EM http://www.apsu.edu/amatlas/ • Eastern United States • Statewide Family Eastern spadefoot Scaphiopodidae (Scaphiopus holbrookii) Metatarsal tubercle Breeding Call •Nasal grunts: “wahh,,, wahh, wahh” •Young crow Breeding Season T-storms SVL = 2” •Late (June,July) Characteristics: (heavy rain) • Vertical Pupil • Glanular -
Early Eocene Frogs from Vastan Lignite Mine, Gujarat, India
Early Eocene frogs from Vastan Lignite Mine, Gujarat, India ANNELISE FOLIE, RAJENDRA S. RANA, KENNETH D. ROSE, ASHOK SAHNI, KISHOR KUMAR, LACHHAM SINGH, and THIERRY SMITH Folie, A., Rana, R.S., Rose, K.D., Sahni, A., Kumar, K., Singh, L., and Smith, T. 2013. Early Eocene frogs from Vastan Lignite Mine, Gujarat, India. Acta Palaeontologica Polonica 58 (3): 511–524. The Ypresian Cambay Shale Formation of Vastan Lignite Mine in Gujarat, western India, has yielded a rich vertebrate fauna, including the earliest modern mammals of the Indian subcontinent. Here we describe its assemblage of four frogs, including two new genera and species, based on numerous, diverse and well−preserved ilia and vertebrae. An abundant frog, Eobarbourula delfinoi gen. and sp. nov., with a particular vertebral articulation similar to a zygosphene−zygantrum complex, represents the oldest record of the Bombinatoridae and might have been capable of displaying the Unken reflex. The large non−fossorial pelobatid Eopelobates, known from complete skeletons from the Eocene and Oligocene of Europe, is also identified at Vastan based on a single nearly complete ilium. An abundant “ranid” and a possible rhacophorid Indorana prasadi gen. and sp. nov. represent the earliest records of both families. The Vastan pelobatids and ranids confirm an early worldwide distribution of these families, and the bombinatorids and rhacophorids show possible origins of those clades on the Indian subcontinent. Key words: Amphibia, Bombinatoridae, Ranidae, Pelobatidae, Rhacophoridae, Eocene, Vastan, India. Annelise Folie [[email protected]] and Thierry Smith [[email protected]], Royal Bel− gian Institute of Natural Sciences, Department of Paleontology, Rue Vautier 29, B−1000 Brussels, Belgium; Rajendra S. -
Indigenous and Established Herpetofauna of Caddo Parish, Louisiana
Indigenous and Established Herpetofauna of Caddo Parish, Louisiana Salamanders (8 species) Genus Species Common Name Notes Kingdom: Animalia >> Phylum: Chordata >> Class: Amphibia >> Order: Caudata >> Suborder: Salamandroidea Family: Ambystomatidae Ambystoma - Mole Ambystoma maculatum Spotted Salamander Salamanders Ambystoma opacum Marbled Salamander Ambystoma talpoideum Mole Salamander Ambystoma texanum Small-mouthed Salamander Family: Amphiumidae Amphiuma - Amphiuma tridactylum Three-toed Amphiuma Amphiumas Family: Plethodontidae Eurycea - Brook Eurycea quadridigitata Dwarf Salamander Salamanders Family: Salamandridae Notophthalmus - Notophthalmus viridescens Central Newt Eastern Newts louisianensis Kingdom: Animalia >> Phylum: Chordata >> Class: Amphibia >> Order: Caudata >> Suborder: Sirenoidea Family: Sirenidae Siren - Sirens Siren intermedia nettingi Western Lesser Siren 1 of 7 To comment on this checklist or for additional (possibly updated) copies, contact: L.E.A.R.N., (318) 773-9393; PO Box 8026, Shreveport, LA 71148; [email protected] Indigenous and Established Herpetofauna of Caddo Parish, Louisiana Frogs (17 species) Genus Species Common Name Notes Kingdom: Animalia >> Phylum: Chordata >> Class: Amphibia >> Order: Anura >> Suborder: Neobatrachia Family: Bufonidae Anaxyrus - North Anaxyrus fowleri Fowler’s Toad American Toads Family: Eleutherodactylidae Subfamily: Eleutherodactylinae Eleutherodactylus - Eleutherodactylus Rio Grande Chirping Frog Alien species / Isolated Rain Frogs cystignathoides campi record- call -
ABSTRACTS 29 Reptile Ecology I, Highland A, Sunday 15 July 2018
THE JOINT MEETING OF ASIH SSAR HL lcHTHYOLOGISTS & HERPETOLOGISTS ROCHESTER, NEW YORK 2018 ABSTRACTS 29 Reptile Ecology I, Highland A, Sunday 15 July 2018 Curtis Abney, Glenn Tattersall and Anne Yagi Brock University, St. Catharines, Ontario, Canada Thermal Preference and Habitat Selection of Thamnophis sirtalis sirtalis in a Southern Ontario Peatland Gartersnakes represent the most widespread reptile in North America. Despite occupying vastly different biogeoclimatic zones across their range, evidence suggests that the thermal preferenda (Tset) of gartersnakes has not diverged significantly between populations or different Thamnophis species. The reason behind gartersnake success could lie in their flexible thermoregulatory behaviours and habitat selection. We aimed to investigate this relationship by first identifying the Tset of a common gartersnake species (Thamnophis sirtalis sirtalis) via a thermal gradient. We then used this Tset parameter as a baseline for calculating the thermal quality of an open, mixed, and forested habitat all used by the species. We measured the thermal profiles of these habitats by installing a series of temperature-recording analogues that mimicked the reflectance and morphology of living gartersnakes and recorded environmental temperatures as living snakes experience them. Lastly, we used coverboards to survey the current habitat usage of T. s. sirtalis. Of the three habitats, we found that the open habitat offered the highest thermal quality throughout the snake’s active season. In contrast, we recorded the greatest number of snakes using the mixed habitat which had considerably lower thermal quality. Although the open habitat offered the greatest thermal quality, we regularly recorded temperatures exceeding the upper range of the animals’ thermal preference. -
Phylogenetic Relationships of Pelobatoidea Re-Examined Using Mtdna
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 28 (2003) 12–23 www.elsevier.com/locate/ympev Phylogenetic relationships of Pelobatoidea re-examined using mtDNA Mario Garcııa-Parııs,a,* Daniel R. Buchholz,b and Gabriela Parra-Oleac a Museo Nacional de Ciencias Naturales, CSIC, Jose Gutierrez Abascal, 2. 28006 Madrid, Spain b Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720-3160, USA c Instituto de Biologııa, UNAM. AP 70-153, Mexico DF 04510, Mexico Received 1 April 2002; revised 15 January 2003 Abstract Pelobatoidea is a clade of ancient anurans with obscure relationships to the remaining clades of frogs. We used partial sequences of two mitochondrial genes (cytochrome b and 16S RNA) from all Pelobatoidea subclades, including all species of Pelobatidae and Pelodytidae and four outgroup taxa (Xenopus, Ascaphus, Discoglossus, and Rana), to propose a phylogenetic hypothesis for rela- tionships within Pelobatoidea. Maximum likelihood and Bayesian analyses support the monophyly of Pelobatoidea, but our hy- pothesis of internal relationships differs substantially from all previous hypotheses. Megophryidae is sister to Pelobates, and this clade is sister to Pelodytes. The most basal clade within Pelobatoidea is formed by Scaphiopus and Spea. The family Pelobatidae, as previously defined is not monophyletic, and it is split into Eurasian spadefoot toads Pelobates which retain the name Pelobatidae and North American spadefoot toads Scaphiopus and Spea which comprise the revived taxon Scaphiopodidae. Our analysis un- covers the existence of morphologically cryptic taxa within previously recognized species of the genus Spea and reveals marked genetic differentiation within Iberian Pelodytes. We discuss biogeographic implications and the evolution of fossoriality in the light of the new phylogenetic hypothesis.